Maximal σ‐polynomials of connected 3‐chromatic graphs

In the set of graphs of order n and chromatic number k the following partial order relation is defined. One says that a graph G is less than a graph H if c_i(G) ≤ c_i(H) holds for every i, k ≤ i ≤ n and at least one inequality is strict, where c_i(G) denotes the number of i‐color partitions of G. In this paper the first ? n/2 ? levels of the diagram of the partially ordered set of connected 3‐chromatic graphs of order n are described. © 2003 Wiley Periodicals, Inc. J Graph Theory 43: 210–222, 2003     

Synthesis and characterization of mid‐ and end‐chain functional telechelics by controlled polymerization methods and coupling processes

Well‐defined polystyrene‐ (PSt) or poly(ε‐caprolactone) (PCL)‐based polymers containing mid‐ or end‐chain 2,5 or 3,5‐ dibromobenzene moieties were prepared by controlled polymerization methods, such as atom transfer radical polymerization (ATRP) or ring opening polymerization (ROP). 1,4‐Dibromo‐2‐(bromomethyl)benzene, 1,3‐dibromo‐5‐(bromomethyl)benzene, and 1,4‐dibromo‐2,5‐di(bromomethyl)benzene were used as initiators in ATRP of styrene (St) in conjunction with CuBr/2,2′‐bipyridine as catalyst. 2,5‐Dibromo‐1,4‐(dihydroxymethyl)benzene initiated the ROP of ε‐caprolactone (CL) in the presence of stannous octoate (Sn(Oct)₂) catalyst. The reaction of these polymers with amino‐ or aldehyde‐functionalized monoboronic acids, in Suzuki‐type couplings, afforded the corresponding telechelics. Further functionalization with oxidable groups such as 2‐pyrrolyl or 1‐naphthyl was attained by condensation reactions of the amino or aldehyde groups with low molecular weight aldehydes or amines, respectively, with the formation of azomethine linkages. Preliminary attempts for the synthesis of fully conjugated poly(Schiff base) with polymeric segments as substituents, by oxidative polymerization of the macromonomers, are presented. All the starting, intermediate, or final polymers were structurally analyzed by spectral methods (¹H NMR, ¹³C NMR, and IR). © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 727–743, 2006     

Point mutations in SARS-CoV-2 variants induce long-range dynamical perturbations in neutralizing antibodies

Monoclonal antibodies are emerging as a viable treatment for the coronavirus disease 19 (COVID-19). However, newly evolved variants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) can reduce the efficacy of currently available antibodies and can diminish vaccine-induced immunity. Here, we demonstrate that the microscopic dynamics of neutralizing monoclonal antibodies can be profoundly modified by the mutations present in the spike proteins of the SARS-COV-2 variants currently circulating in the world population. The dynamical perturbations within the antibody structure, which alter the thermodynamics of antigen recognition, are diverse and can depend both on the nature of the antibody and on the spatial location of the spike mutation. The correlation between the motion of the antibody and that of the spike receptor binding domain (RBD) can also be changed, modulating binding affinity. Using protein-graph-connectivity networks, we delineated the mutant-induced modifications in the information-flow along allosteric pathway throughout the antibody. Changes in the collective dynamics were spatially distributed both locally and across long-range distances within the antibody. On the receptor side, we identified an anchor-like structural element that prevents the detachment of the antibodies; individual mutations there can significantly affect the antibody binding propensity. Our study provides insight into how virus neutralization by monoclonal antibodies can be impacted by local mutations in the epitope via a change in dynamics. This realization adds a new layer of sophistication to the efforts for rational design of monoclonal antibodies against new variants of SARS-CoV2, taking the allostery in the antibody into consideration.

Mutations in the new variants of SARS-CoV-2 spike protein modulates the dynamics of the neutralizing antibodies. Capturing such modulations from MD simulations and graph network model identifies the role of mutations in facilitating immune evasion.     

Asymmetry in liquid crystalline hexaalkoxytriphenylene discotics

The synthesis and phase behaviour of a new series of unsymmetrically substituted hexaalkoxytriphenylene‐based liquid crystals are reported. One of the hexyloxy chains in hexahexyloxytriphenylene (HAT6) is replaced by either a shorter or a longer chain, HAT‐(OC₆H₁₃)₅(OC _n H_2n+1). Compounds with chain lengths n of 2–14, 16 and 18 were prepared and investigated. Compounds with n?13 were not liquid crystalline. For all compounds with n?12 Col_h textures were observed by polarizing microscopy. X‐ray investigations showed that the intercolumnar distance gradually increased with n from n = 2 to n = 12, while the interdisk distance (3.6 Å) remained constant. A small odd–even effect on the increase of the intercolumn distance with n was observed. This effect was also found in the change of ΔH of isotropization with n.     

Frequency‐dependent NMR relaxation of liquids confined inside porous media containing an increased amount of magnetic impurities

Frequency‐dependent NMR relaxation studies have been carried out on water (polar) and cyclohexane (nonpolar) molecules confined inside porous ceramics containing variable amounts of iron oxide (III). The porous ceramics were prepared by compression of powders mixed with iron oxide followed by thermal treatment. The pore size distribution was estimated using a technique based on diffusion in internal fields that exposed a narrow distribution of macropore sizes with an average pore dimension independent of iron oxide content. The relaxation dispersion curves were obtained at room temperature using a fast field cycling NMR instrument. They display an increase of the relaxation rate proportional to the iron oxide concentration. This behavior is more prominent at low Larmor frequencies and is independent of the polar character of the confined molecules. The results reported here can be fitted well with a relaxation model considering exchange between molecules in the close vicinity of the paramagnetic centers located in the surface and bulk‐like molecules inside the pores. This model allows the extraction of the transverse diffusional correlation time that can be related to the polar character of the confined molecules. Copyright © 2013 John Wiley & Sons, Ltd.     

The Effects of Different Superplasticizers and Water-to-Cement Ratios on the Hydration of Gray Cement Using T2-NMR

In the present work, we compare the influence introduced by the variation of water-to-cement ratio and the presence of different superplasticizers on the hydration process of gray cement using the low-field nuclear magnetic resonance relaxometry. The stages of hydration are identified and a relationship between the ettringite formation during hydration process and the transverse relaxation time is established. It is also demonstrated that the addition of small amounts of superplasticizer in the cement paste significantly expands the dormant period while the hardening period is reduced. On the other side, the increase in the water-to-cement ratio has little influence on the dormant period but can instead increase the porosity of the sample and consequently reduce its strength.     

Probing the Pore Size of Porous Ceramics with Controlled Amount of Magnetic Impurities via Diffusion Effects on the CPMG Technique

In our work, we will explore the possibility of implementing the well-known Carr–Purcell–Meiboom–Gill pulse sequence to determine the pore size of porous ceramics with magnetic impurities. The proposed approach exploits the diffusion dependence of the spin-echo signal in the presence of internal gradients occurring as a result of susceptibility contrast between the porous matrix and the confined liquid. For calibrating the technique, a comparison of the pore size data with those extracted from the so-called DDIF technique (DDIF, decay due to diffusion in the internal fields) is performed. This approach can be applied for nondestructive in situ characterization of soils, concrete, biological tissues or other structures with micrometer pore size.     

Chemical bonding in representative astrophysically relevant neutral,cation, and anion HCnH chains

Most existing studies assign a polyynic and cumulenic character of chemical bonding in carbon-based chains relying on values of the bond lengths. Building on our recent work, in this paper we add further evidence on the limitations of such an analysis and demonstrate the significant insight gained via natural bond analysis. Presently reported results include atomic charges, natural bond order and valence indices obtained from ab initio computations for representative members of the astrophysically relevant neutral and charged HC_2k/2k+1H chain family. They unravel a series of counter-intuitive aspects and/or help naive intuition in properly understanding microscopic processes, e.g., electron removal from or electron attachment to a neutral chain. Demonstrating that the Wiberg indices adequately quantify the chemical bonding structure of the HC_2k/2k+1H chains—while the often heavily advertised Mayer indices do not—represents an important message conveyed by the present study.     

MHD mixed convection flow near the stagnation-point on a vertical permeable surface

The steady magnetohydrodynamic (MHD) mixed convection boundary layer flow of a viscous and electrically conducting fluid near the stagnation-point on a vertical permeable surface is investigated in this study. The velocity of the external flow and the temperature of the plate surface are assumed to vary linearly with the distance from the stagnation-point. The governing partial differential equations are first transformed into ordinary differential equations, before being solved numerically by a finite-difference method. The features of the flow and heat transfer characteristics for different values of the governing parameters are analyzed and discussed. Both assisting and opposing flows are considered. It is found that dual solutions exist for both cases, and the range of the mixed convection parameter for which the solution exists increases with suction.