Numerical solution of Navier–Stokes equations using multiquadric radial basis function networks

A numerical method based on radial basis function networks (RBFNs) for solving steady incompressible viscous flow problems (including Boussinesq materials) is presented in this paper. The method uses a ‘universal approximator’ based on neural network methodology to represent the solutions. The method is easy to implement and does not require any kind of ‘finite element‐type’ discretization of the domain and its boundary. Instead, two sets of random points distributed throughout the domain and on the boundary are required. The first set defines the centres of the RBFNs and the second defines the collocation points. The two sets of points can be different; however, experience shows that if the two sets are the same better results are obtained. In this work the two sets are identical and hence commonly referred to as the set of centres. Planar Poiseuille, driven cavity and natural convection flows are simulated to verify the method. The numerical solutions obtained using only relatively low densities of centres are in good agreement with analytical and benchmark solutions available in the literature. With uniformly distributed centres, the method achieves Reynolds number Re = 100 000 for the Poiseuille flow (assuming that laminar flow can be maintained) using the density of , Re = 400 for the driven cavity flow with a density of and Rayleigh number Ra = 1 000 000 for the natural convection flow with a density of . Copyright © 2001 John Wiley & Sons, Ltd.     

Coulomb forces impacts on nanomaterial transportation within porous tank with lid walls

Journal of Thermal Analysis and Calorimetry - Electrical sensor has been considered in the current attempt. Combination of buoyancy, electric and radiative forces has been included in the governing...     

Structural and Functional Analysis of the Pyridoxal Phosphate Homeostasis Protein YggS from Fusobacterium nucleatum

Pyridoxal 5′-phosphate (PLP) is the active form of vitamin B6, but it is highly reactive and poisonous in its free form. YggS is a PLP-binding protein found in bacteria and humans that mediates PLP homeostasis by delivering PLP to target enzymes or by performing a protective function. Several biochemical and structural studies of YggS have been reported, but the mechanism by which YggS recognizes PLP has not been fully elucidated. Here, we report a functional and structural analysis of YggS from Fusobacterium nucleatum (FnYggS). The PLP molecule could bind to native FnYggS, but no PLP binding was observed for selenomethionine (SeMet)-derivatized FnYggS. The crystal structure of FnYggS showed a type III TIM barrel fold, exhibiting structural homology with several other PLP-dependent enzymes. Although FnYggS exhibited low (<35%) amino acid sequence similarity with previously studied YggS proteins, its overall structure and PLP-binding site were highly conserved. In the PLP-binding site of FnYggS, the sulfate ion was coordinated by the conserved residues Ser201, Gly218, and Thr219, which were positioned to provide the binding moiety for the phosphate group of PLP. The mutagenesis study showed that the conserved Ser201 residue in FnYggS was the key residue for PLP binding. These results will expand the knowledge of the molecular properties and function of the YggS family.     

A two-frequency acoustic technique for bubble resonant oscillation studies

A two-frequency acoustic apparatus has been developed to study the dynamics of a single gas or vapor bubble in water. An advantage of the apparatus is its capability of trapping a bubble by an ultrasonic standing wave while independently driving it into oscillations by a second lower frequency acoustic wave. For a preliminary application, the apparatus is used to study resonant oscillations. First, near-resonant coupling between the volume and the n = 3 shape oscillation modes of air bubbles at room temperature is studied, where n is the mode number. The stability boundary, amplitude versus frequency, of the volume oscillation forms a wedge centered at the resonant frequency, which qualitatively agrees with a theoretical prediction based on a phase-space analysis. Next, the resonant volume oscillations of vapor bubbles are studied. The resonant radius of vapor bubbles at 80 degrees C driven at 1682 Hz is determined to be 0.7 mm, in agreement with a prediction obtained by numerical simulation.     

Improved dimensional stability of Nafion membrane modified using a layer by layer self-assembly of biophilic polymers

The modification of perfluorinated proton exchange membranes (e.g. Nafion) utilizing a layer by layer (LbL) electrostatic assembly of oppositely charged biophilic polymers such as poly-l-lysine as positive layer and dsDNA as a negative layer is developed to protect the interface between the catalyst layer and the membrane in a low temperature fuel cell. Various physicochemical measurements including water uptake, proton conductivity and surface tension were investigated for both the as-received Nafion and the biopolymeric LbL modified Nafion. The smaller water contact angle and the less swelling characteristics of the biopolymer modified Nafion membrane was founded compared to that of as-received Nafion. This clearly indicates that the more hydrophilic surface of biopolymeric layers on Nafion plays an important role in the enhanced dimensional stability. In addition, a potential hypothesis explaining the higher proton conductivity from the LbL biopolymeric film coated Nafion is suggested.     

Identification of Novel Rab27a/Melanophilin Blockers by Pharmacophore-Based Virtual Screening

Melanocytes are unique cells that produce specific melanin-containing intracellular organelles called melanosomes. Melanosomes are transported from the perinuclear area of melanocytes toward the plasma membrane as they become more melanized in order to increase skin pigmentation. In this vesicular trafficking of melanosomes, Rab27a, melanophilin, and myosin Va play crucial roles in linking melanosomes to actin-based motors. To identify novel compounds to inhibit binding interface between Rab27a and melanophilin, a pharmacophore model was built based on a modeled 3D structure of the protein complex that describes the essential binding residues in the intermolecular interaction. A pharmacophore model was employed to screen a chemical library database. Finally, 25 virtual hits were selected for biological evaluations. The biological activities of 11 analogues were evaluated in a second assay. Two compounds were identified as having concentration-dependent inhibitory activity. By analyzing structure–activity relationships of derivatives of BMD-20, two hydroxyl functional groups were found to be critical for blocking the intermolecular binding between Rab27a and melanophilin.     

Tuning Local Coordination Environments of Manganese Single-Atom Nanozymes with Multi-Enzyme Properties for Selective Colorimetric Biosensing

Single-atom nanozymes (SAzymes) are promising in next-generation nanozymes, nevertheless, how to rationally modulate the microenvironment of SAzymes with controllable multi-enzyme properties is still challenging. Herein, we systematically investigate the relationship between atomic configuration and multi-enzymatic performances. The constructed Mn_SA−N₃-coordinated SAzymes (Mn_SA−N₃−C) exhibits much more remarkable oxidase-, peroxidase-, and glutathione oxidase-like activities than that of Mn_SA−N₄−C. Based on experimental and theoretical results, these multi-enzyme-like behaviors are highly dependent on the coordination number of single atomic Mn sites by local charge polarization. As a consequence, a series of colorimetric biosensing platforms based on Mn_SA−N₃−C SAzymes is successfully built for specific recognition of biological molecules. These findings provide atomic-level insight into the microenvironment of nanozymes, promoting rational design of other demanding biocatalysts.     

Anisotropic assembly of Ag nanoprisms

The Ag nanoprisms with controlled arrangements show distinct optical, crystallographic, and surface-enhanced Raman scattering properties depending on their orientation in the assemblies, demonstrating that the controlled assembly of anisotropic nanostructures can be utilized as a powerful tool for studying their physicochemical properties and for the creation of new classes of functional materials.