Line shape parameters measurement and computations for self-broadened carbon dioxide transitions in the 30012 ← 00001 and 30013 ← 00001 bands, line mixing, and speed dependence

Transitions of pure carbon dioxide have been measured using a Fourier transform spectrometer in the 30012 ← 00001 and 30013 ← 00001 vibrational bands. The room temperature spectra, recorded at a resolution of 0.008 cm⁻¹, were analyzed using the Voigt model and a Speed Dependent Voigt line shape model that includes a pressure dependent narrowing parameter. Intensities, self-induced pressure broadening, shifts, and weak line mixing coefficients are determined. The results obtained are consistent with other studies in addition to the theoretically calculated values. Exponential Power Gap (EPG) and Energy Corrected Sudden (ECS) scaling laws were used to calculate the relaxation matrix elements.     

Near-Curie magnetic anomaly at the Ni/C interface observed by electron holography

We analyze with electron holography carried out in a transmission electron microscope the near-Curie behavior of magnetism at the edge of a Nickel thin film coated with Carbon. In-situ experiments with finely controlled variations of the sample temperature reveal an anomaly in the ferromagnetic to paramagnetic phase transition when the film temperature is a few degrees above the nominal Curie point. We interpret the anomaly as a strain-induced spin reorientation transition triggered by the differential thermal expansion of Carbon and Nickel. We present a model that quantitatively reproduces the main features of the observed signal. The model is developed in terms of an anisotropic, temperature dependent exchange coupling between the Nickel moments at the Carbon interface that favors their vertical alignment at low temperatures.     

Conformational Dynamics Underlies Different Functions of Human KDM7 Histone Demethylases

The human KDM7 subfamily histone H3 Nϵ-methyl lysine demethylases PHF8 (KDM7B) and KIAA1718 (KDM7A) have different substrate selectivities and are linked to genetic diseases and cancer. We describe experimentally based computational studies revealing that flexibility of the region linking the PHD finger and JmjC domains in PHF8 and KIAA1718 regulates interdomain interactions, the nature of correlated motions, and ultimately H3 binding and demethylation site selectivity. F279S an X-linked mental retardation mutation in PHF8 is involved in correlated motions with the iron ligands and second sphere residues. The calculations reveal key roles of a flexible protein environment in productive formation of enzyme-substrate complexes and suggest targeting the flexible KDM7 linker region is of interest from a medicinal chemistry perspective.     

Al-doped B80 fullerene as a suitable candidate for H2, CH4, and CO2 adsorption for clean energy applications

Dispersion-corrected density functional theory method was performed to report on a high-performance adsorbent for removal of CO₂ from the precombustion and natural gases. At first, the effect of Al atom impurity on the structural and electronic properties of B₈₀ fullerene is studied. Then, the adsorption geometries and energies of gases (H₂, CH₄, or CO₂) on the B₈₀ and AlB₇₉ (amphoteric adsorbents) are explored. The Al atom enhances reactivity of the cage toward the gases and the adsorption processes are more exothermic with low and high energy barriers for chemisorption of H₂ and CO₂, respectively. Stable chemisorption of CO₂ on the AlB₇₉ is validated by the high adsorption energy and large charge transfer, while the CH₄ is just physically adsorbed on the AlB₇₉. Further, the physisorbed gases can enhance field emission current of the AlB₇₉ and in the continuous capturing of the gases, the magnetic moment of the cage is quenched. Furthermore, dependency of the electronic structure of the adsorbent on the gas adsorption is intensively studied. We suggest that the AlB₇₉ could be a promising material for capture, storage, and separation of the gases and as a novel material for sustainable energy and sweetening process in the petroleum industry.     

Impact of picoliter droplets on superhydrophobic surfaces with ultralow spreading ratios

The impact of picoliter-sized water droplets on superhydrophobic CF(4) plasma fluorinated polybutadiene surfaces is investigated with high-speed imaging. Variation of the surface topography by plasmachemical modification enables the dynamics of wetting to be precisely controlled. Final spreading ratios as low as 0.63 can be achieved. A comparison of the maximum spreading ratio and droplet oscillation frequencies to models described in the literature shows that both are found to be much lower than theoretically predicted.     

Electronic energy transfer and collection in luminescent molecular rods containing ruthenium(II) and osmium(II) 2,2':6',2"-terpyridine complexes linked by thiophene-2,5-diyl spacers

The electronic absorption spectra, luminescence spectra and lifetimes (in MeCN at room temperature and in frozen n-C3H7CN at 77 K), and electrochemical potentials (in MeCN) of the novel dinuclear [(tpy)Ru(3)Os(tpy)]4+ and trinuclear [(tpy)Ru(3)Os(3)Ru(tpy)]6- complexes (3 = 2,5-bis(2,2':6',2'-terpyridin-4-yl)thiophene) have been obtained and are compared with those of model mononuclear complexes and homometallic [(tpy)Ru(3)Ru(tpy)]4+, [(tpy)Os(3)Os(tpy)]4+ and [(tpy)Ru(3)Ru(3)Ru(tpy)]6+ Complexes. The bridging ligand 3 is nearly planar in the complexes, as seen from a preliminary X-ray determination of [(tpy)Ru(3)Ru(tpy)][PF6]4, and confers a high degree of rigidity upon the polynuclear species. The trinuclear species are rod-shaped with a distance of about 3 nm between the terminal metal centres. For the polynuclear complexes, the spectroscopic and electrochemical data are in accord with a significant intermetal interaction. All of the complexes are luminescent (phi in the range 10(-4)-10(-2) and tau in the range 6-340 ns, at room temperature), and ruthenium- or osmium-based luminescence properties can be identified. Due to the excited state properties of the various components and to the geometric and electronic properties of the bridge, Ru --> Os directional transfer of excitation energy takes place in the complexes [(tpy)Ru(3)Os(tpy)]4+ (end-to-end) and [(tpy)Ru(3)Os(3)Ru(tpy)]6+ (periphery-to-centre). With respect to the homometallic case, for [(tpy)Ru(3)Os(3)Ru(tpy)]6+ excitation trapping at the central position is accompanied by a fivefold enhancement of luminescence intensity.     

Comparison of a calculated and measured XANES spectrum of α-Fe2O3

Comparison and prediction of the experimental XANES spectrum is a good measurement of the quality of the electronic structure calculations employed, and their ability to predict electronic transitions in solids. Here we present a comparison between BLYP + U and hybrid-BLYP calculations regarding the geometric, magnetic and electronic structures of α-Fe(2)O(3) (hematite). Several values of U and different percentages of Fock-exchange have been screened to see how their contributions affect different properties of hematite, paying particular attention to the electronic structure. To estimate the quality of the various methods the calculated density-of-states were compared to the experimentally collected XANES spectrum of the iron K-edge, providing information about the orbitals describing the conduction band. We find that in agreement with previous studies DFT + U and hybrid-functional simulations can correctly predict the character of the valence band, but only Fock-exchange higher than 30% or U-values equal or larger than 6 eV properly reproduce the order between the t(g) and e orbitals in the conduction band, and can, therefore, be used to study and predict XANES spectra and electronic transitions in hematite.     

Modeling of solvent flow effects in enzyme catalysis under physiological conditions

A stochastic model for the dynamics of enzymatic catalysis in explicit, effective solvents under physiological conditions is presented. Analytically-computed first passage time densities of a diffusing particle in a spherical shell with absorbing boundaries are combined with densities obtained from explicit simulation to obtain the overall probability density for the total reaction cycle time of the enzymatic system. The method is used to investigate the catalytic transfer of a phosphoryl group in a phosphoglycerate kinase-ADP-bis phosphoglycerate system, one of the steps of glycolysis. The direct simulation of the enzyme-substrate binding and reaction is carried out using an elastic network model for the protein, and the solvent motions are described by multiparticle collision dynamics which incorporates hydrodynamic flow effects. Systems where solvent-enzyme coupling occurs through explicit intermolecular interactions, as well as systems where this coupling is taken into account by including the protein and substrate in the multiparticle collision step, are investigated and compared with simulations where hydrodynamic coupling is absent. It is demonstrated that the flow of solvent particles around the enzyme facilitates the large-scale hinge motion of the enzyme with bound substrates, and has a significant impact on the shape of the probability densities and average time scales of substrate binding for substrates near the enzyme, the closure of the enzyme after binding, and the overall time of completion of the cycle.