Chemie von α-Aminonitrilen. 13. Mitteilung. Über die Bildung von 2-Oxoethyl-phosphaten (“Glycoladehyd-phosphaten”) aus rac-Oxirancarbonitril und anorganischem Phosphat und über (formale) Konstitutionelle Zusammenhänge zwischen 2-Oxoethyl-phosphaten und Oligo (hexo- und pentopyranosyl)nucleotid-Rückgraten

Chemistry of α-Aminonitriles. Formation of 2-Oxoethyl Phosphates (“Glycolaldehyde Phosphates”) from rac-Oxiranecarbonitrile and on (Formal) Constitutional Relationships between 2-Oxoethyl Phosphates and Oligo(hexo- and pentopyranosyl)nucleotide Backbones Oxiranecarbonitrile in basic acqueous solution at room temperature reacts regioselectively with inorganic phosphate to give the cyanohydrin of 2-oxoethyl phosphate (“glycolaldehyde phosphate”), a source of (the hydrate of) the free aldehyde, preferably in the presence of formaldehyde. In aqueous phosphate solution buffered to nearly neutral pH, oxiranecarbonitrile produces the phosphodiester of glycoladehyde as its bis-cyanohydrin in good yield. In contrast to mono- and dialkylation, trialkylation of phosphate with oxiranecarbonitrile is difficult, and the triester derivative is highly sensitive to hydrolysis. Glycolaldehyde phosphate per se is of prebiotic interest, since it had been shown [5] to aldomerize in basic aqueous solution regioselectively to rac-hexose 2, 4, 6-triphosphates and – in the presence of formaldehyde - mainly to rac-pentose 2, 4-diphosphates with, under appropriate conditions, rac-pentose 2, 4-diphosphates as the major reaction product. However, the question as to whether oxiranecarbonitrile itself has the potential of having been a prebiological natural constituent remains unanswered. Backbone structures of hexopyranosyl-oligonucleotides with phosphodiester linkages specifically between the positions 6′ → 4′, 6′ → 2′, or 4′ → 2′ of the sugar residues can formally be derived via the (hypothetical) aldomerization pathway, a combinatorial intermolecular aldomerization of glycoladehyde phosphate and bis(glycolaldehyde)-phosphodiester in a 1: 1 ratio. The constitutional relationships revealed by this synthetic analysis has played a decisive role as a selection criterion in the pursuit of our experimental studies toward a chemical etiology of the natural nucleic acids' structure. The Discussion in this paper delineates how the analysis contributed to the conception of the structure of p-RNA. The English Footnotes to Schemes 1–11 provide an extension of this summary.     

Fast and Reliable Automated Synthesis of RNA and Partially 2′-O- Protected Precursors (`Caged RNA') Based on Two Novel,Orthogonal 2′-O-Protecting Groups,Preliminary Communication

Two sets of RNA phosphoramidites, carrying the (fluoride-labile) 2′-O-[(triisopropylsilyl)oxy]methyl (=tom) group and the (photolabile) [(R)-1-(2-nitrophenyl)ethoxy]methyl (=(R)-npeom) group, were prepared (see 1 – 4 and 5 – 8 , resp.). The two protecting groups were completely orthogonal to each other. Three ribozyme-substrate constructs, protected each by a (R)-npeom group, were synthesized; on photolysis, efficient cleavage of this remaining protecting group occurred (Scheme 3). It could be demonstrated that the presence of one (R)-npeom group within a RNA strand has only a minor influence on the pairing properties of corresponding duplexes.     

Pentopyranosyl Oligonucleotide Systems. 9th Communication

Pyranosyl‐RNA (‘p‐RNA’ ) is an oligonucleotide system isomeric to natural RNA and composed of the very same building blocks as RNA. Its generational, chemical, and informational properties are deemed to be those of an alternative nucleic acid system that could have been a candidate in Nature's evolutionary choice of the molecular basis of genetic function. We consider the study of the chemistry of p‐RNA as etiologically relevant in the sense that knowledge of its structural, chemical, and informational properties on the chemical level offers both a perspective and reference points for the recognition of specific structural assets of the RNA structure that made it the (supposedly) superior system among possible alternatives and, therefore, the system that became part of biology as we know it today. The paper describes the chemical synthesis of β‐d‐ (and L )‐ribopyranosyl‐(4′→2′)‐oligonucleotide sequences, presents a resume of their structural and chemical properties, and cautiously discusses what we may and may not have learned from the pyranosyl isomer of RNA with respect to the conundrum of RNA's origin.     

Rotational fluctuations of water inside the nanopores of SBA-type molecular sieves

The rotational molecular dynamics of water confined to nanoporous molecular sieves of a regular hexagonal (SBA-15) and of a foamlike pore structure was studied by dielectric spectroscopy in the frequency range from 10(-2) to 10(9) Hz and in a broad temperature interval. Two relaxation processes were observed: the process at lower frequencies is related to water molecules forming a layer, which is strongly adsorbed at the pore surface, whereas the relaxation process at higher frequencies is assigned to fluctuations of water molecules situated close to the center of the pore. The relaxation times of the low-frequency process for both materials and of the high-frequency process for the SBA-15 material have an unusual saddlelike temperature dependence, reported here for the first time. To describe this temperature dependence, a model developed for water confined to nanoporous glasses by Ryabov et al. [J. Phys. Chem. B 2001, 105, 1845] was applied, which considers two competing effects. The characteristic features of these two competing processes were compared with those reported for other porous systems.     

Experimente mit Erdalkalimetallen

Reactions of the alkaline earth metals magnesium, calcium, strontium, and barium with water, phenolphthalein solution, diluted extract of red cabbage, diluted hydrochloric acid, or ammonia are well suited for a demonstration of the increase in reactivity within this group of metals with increasing atomic number. If the alkali metals lithium and sodium are included, the reactivity of six s‐block elements can be demonstrated in test tubes with small amounts of chemicals.     

Flame propagation speed and Markstein length of spherically expanding flames: Assessment of extrapolation and measurement techniques

Laminar burning velocities are of great importance in many combustion models as well as for validation and improvement of chemical kinetic schemes. Determining laminar burning velocities with high accuracy is quite challenging and different approaches exist. Hence, a comparison of existing methods measuring and evaluating laminar burning velocities is of interest. Here, two optical diagnostics, high speed tomography and Schlieren cinematography, are simultaneously set up to investigate methods for evaluating laminar flame speed in a spherical flame configuration. The hypothesis to obtain the same flame propagation radii over time with the two different techniques is addressed. Another important aspect is the estimation of flame properties, such as the unstretched flame propagation speed and Markstein length in the burnt gas phase and if these are estimated satisfactorily by common experimental approaches. Thorough evaluation of the data with several extrapolation techniques is undertaken. A systematic extrapolation approach is presented to give more confidence into results generated experimentally. The significance of the linear extrapolation routine is highlighted in this context. Measurements of spherically expanding flames are carried out in two high-pressure, high-temperature, constant-volume vessels at RWTH in Aachen, Germany and at ICARE in Orleans, France. For the discussion of the systematic extrapolation approach, flame speed measurements of methane / air mixtures with mixture Lewis numbers moderately away from unity are used. Conditions were varied from lean to rich mixtures, at temperatures of 298–373 K, and pressures of 1 atm and 5 bar.     

A consistent LES/filtered-density function formulation for the simulation of turbulent flames with detailed chemistry

A hybrid large-Eddy simulation/filtered-density function (LES–FDF) methodology is formulated for simulating variable density turbulent reactive flows. An indirect feedback mechanism coupled with a consistency measure based on redundant density fields contained in the different solvers is used to construct a robust algorithm. Using this novel scheme, a partially premixed methane/air flame is simulated. To describe transport in composition space, a 16-species reduced chemistry mechanism is used along with the interaction-by-exchange with the mean (IEM) model. For the micro-mixing model, typically a constant ratio of scalar to mechanical time-scale is assumed. This parameter can have substantial variations and can strongly influence the combustion process. Here, a dynamic time-scale model is used to prescribe the mixing time-scale, which eliminates the time-scale ratio as a model constant. Two different flame configurations, namely, Sandia flames D and E are studied. Comparison of simulated radial profiles with experimental data show good agreement for both flames. The LES–FDF simulations accurately predict the increased extinction near the inlet and re-ignition further downstream. The conditional mean profiles show good agreement with experimental data for both flames.