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1.
Molecular structures of dimethyl selenide complexes with AX3 (A = B, Al, Ga, In; X = H, Me) compounds of Group IIIA elements were calculated by the PBE1PBE/Sapporo-TZ method. A complex approach to study the nature of interactions is proposed, which involves analysis of electron localization/delocalization characteristics and their influence on charge transfer and energy effects of complexation. It is shown that electron sharing is more important for stabilization of the complexes under study than electrostatic interaction between their fragments. It is demonstrated that analysis of local (topological) characteristics of the electron density distribution is insufficient to discover similarity/dissimilarity in the nature of some complexes. The energies of interaction in the complexes under study are mainly composed of the contributions of Se atom as active center of the donor molecule and the entire acceptor molecule. Energy characteristics of local interaction between Se atom and Group IIIA element atom are not representative. 相似文献
2.
P. G. Polishchuk T. I. Madzhidov A. Varnek 《Journal of computer-aided molecular design》2013,27(8):675-679
The goal of this paper is to estimate the number of realistic drug-like molecules which could ever be synthesized. Unlike previous studies based on exhaustive enumeration of molecular graphs or on combinatorial enumeration preselected fragments, we used results of constrained graphs enumeration by Reymond to establish a correlation between the number of generated structures (M) and the number of heavy atoms (N): logM = 0.584 × N × logN + 0.356. The number of atoms limiting drug-like chemical space of molecules which follow Lipinsky’s rules (N = 36) has been obtained from the analysis of the PubChem database. This results in M ≈ 1033 which is in between the numbers estimated by Ertl (1023) and by Bohacek (1060). 相似文献
3.
T. I. Madzhidov A. V. Bodrov T. R. Gimadiev R. I. Nugmanov I. S. Antipin A. A. Varnek 《Journal of Structural Chemistry》2015,56(7):1227-1234
By means of a structural representation of the chemical reactivity as a condensed graph a model predicting rate constants of the bimolecular elimination reaction is derived for the first time. The model developed enables the prediction of rate constants of reactions proceeding in different solvents or water-organic mixtures at different temperatures. It demonstrates a good predictive performance: a mean square deviation of predicted values from experimental ones is less than 0.7 logarithmic units. An outlier analysis shows that prediction errors are mainly due to the imperfection of the training data containing unique reactions. The model is available for users at arsole.u-strasbg.fr. 相似文献
4.
5.
Barkovskii Savelii V. Ulitko Maria V. Barkov Alexey Yu. Kochnev Ivan А. Zimnitskiy Nikolay S. Korotaev Vladislav Yu. Sosnovskikh Vyacheslav Ya. Stepanyuk Roman А. Madzhidov Timur I. 《Chemistry of Heterocyclic Compounds》2022,58(8-9):462-472
Chemistry of Heterocyclic Compounds - A method for a regio- and stereoselective synthesis of N-unsubstituted... 相似文献
6.
N. V. Shtyrlin O. A. Lodochnikova M. V. Pugachev T. I. Madzhidov L. P. Sysoeva I. A. Litvinov E. N. Klimovitskii Yu. G. Shtyrlin 《Russian Journal of Organic Chemistry》2010,46(4):561-567
Methods for the preparation of three cyclic 2,3,4-tris(hydroxymethyl)-6-methylpyridin-5-ol acetonides have been developed
by variation of the reaction conditions. The six-membered acetonide turned out to be thermodynamically more stable than the
seven-membered acetonide and bis-acetonide. The experimental data were consistent with the results of quantum-chemical calculations.
The structure of the isolated compounds was proved by X-ray analysis. 相似文献
7.
N. R. Khafizov T. I. Madzhidov O. N. Kadkin I. S. Antipin 《Russian Chemical Bulletin》2017,66(11):2028-2034
The exchange interaction parameters were calculated and the spin density distribution over the organic skeleton of the 1,3,5,7-tetramethyl-2,6-diazaadamantane N,N’-dioxyl biradical was studied based on the results of quantum chemical modeling of the biradical structure by the DFT method using various hybrid functionals (UB3LYP, LC-wPBE, UCAM-B3LYP, UHSEH1PBE) with the 6-311++G(2d,2p) basis set and by the UHF method with the same basis set. The characteristics of the direct orbital overlap between the N atoms of the two nitroxide groups were determined. The values of the J constant, obtained using different calculation methods, were found to be similar to each other. It was established that there is ferromagnetic exchange interaction between the radical sites in the system in question, which occurs predominantly according to the spin polarization mechanism in the 2,6-diazaadamantane core, and the various spin density transfer pathways through the C atoms of the organic skeleton were found to be nonequivalent. The direct overlap of the upper singly-occupied МОs with localization on the nitroxide groups led to a noticeable additional contribution of the antiferromagnetic exchange interaction. Despite the latter factor, the total contribution of these two mechanisms (spin polarization and direct through-space exchange) resulted in the triplet ground state in the biradical studied. 相似文献
8.
G. A. Chmutova E. R. Ismagilova T. I. Madzhidov 《Russian Journal of General Chemistry》2009,79(9):1919-1928
By quantum-chemical DFT/GIAO method chemical shifts of all nuclei in the NMR spectra of 3-methylpyrazol-5-one and 1-phenyl-3-methylchalcogenopyrazol-5-ones
in chloroform and dimethyl sulfoxide were calculated and analyzed using various solvation models. Low sensitivity to solvent
of the chemical shfts of 13C and 1H nuclei (except for “acidic” protons) calculated in the framework of various continuum models is revealed. Discrete and discrete-continuum
models reflect well deshielding of the active centers of H-complexation and chemical shifts of “acidic” protons of the studied
pyrazolones in solutions. Optimization of geometry of pyrazolones in solutions only slightly improves the agreement between
the theoretically calculated and the experimental values. Shielding of nitrogen, oxygen, sulfur, and selenium atoms is more
sensitive to the nature of solvent and to the nature of tautomeric forms. The methods of NMR spectroscopy allow to identify
reliably the dominating tautomeric form but they are insufficient for the quantitative characterization of tautomeric equilibria. 相似文献
9.
Quantum chemical calculation of exchange interactions in supramolecularly arranged N,N′‐dioxy‐2,6‐diazaadamantane organic biradical
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Nail R. Khafizov Timur I. Madzhidov Oleg N. Kadkin Rui Tamura Igor S. Antipin 《International journal of quantum chemistry》2016,116(14):1064-1070
Quantum mechanical exchange effects in purely organic N,N′‐dioxy‐2,6‐diazaadamantane biradical derivatives with promesogenic substituents have been studied. To determine intermolecular exchange energies, packing conditions of the radical core units in layered liquid crystalline phases are simulated using the Gaussian 09 program. The broken symmetry approach gives J ≈ 7 cm?1 for intramolecular ferromagnetic exchange interactions between nitroxyl radical centers in one molecule. Both ferromagnetic and antiferromagnetic intermolecular interactions are possible in this kind of systems according to the obtained calculation results. Depending on the mutual positioning and orientation of molecules, the intermolecular antiferromagnetic exchange constant can reach a value of ?50 cm?1, and the intermolecular ferromagnetic constant a value of 10 cm?1. The simultaneous presence of intramolecular and intermolecular exchange between spin‐carrying centers in this kind of supramolecularly ordered multispin systems is favorable for the formation of magnetically interacting chains and two‐dimensional networks. © 2016 Wiley Periodicals, Inc. 相似文献
10.
Tutubalina E. V. Miftahutdinov Z. Sh. Nugmanov R. I. Madzhidov T. I. Nikolenko S. I. Alimova I. S. Tropsha A. E. 《Russian Chemical Bulletin》2017,66(11):2180-2189
Russian Chemical Bulletin - Semantic analysis of text collections was used to identify drugs with similar therapeutic activity. Natural language processing methods were applied to analyse >... 相似文献