Spectroscopic signatures of halogens in clathrate hydrate cages. 2. Iodine

UV-vis and Raman spectroscopy were used to study iodine molecules trapped in sII clathrate hydrate structures stabilized by THF, CH(2)Cl(2), or CHCl(3). The spectra show that the environment for iodine inside the water cage is significantly less perturbed than either in aqueous solution or in amorphous water-ice. The resonance Raman progression of I(2) in THF clathrate hydrate can be observed up to v = 6 when excited at 532 nm. The extracted vibrational frequency omega e = 214 +/- 1 cm(-1) is the same as that of the free molecule to within experimental error. At the same time, the UV-vis absorption spectrum of I(2) in the sII hydrate exhibits a relatively large, 1440 cm(-1), blue-shift. This is mainly ascribed to the differential solvation of the I(2) electronic states. We conclude that iodine in sII hydrate resides in a 5(12)6(4) cavity, in which the ground-state I(2) potential is not significantly perturbed by the hydrate lattice. In contrast, in water and in ice, the valence absorption band of I(2) is dramatically broadened and blue-shifted by 3000 cm(-1), and the resonance Raman scattering is effectively quenched. These observations are shown to be consistent with a strong interaction between water molecule and iodine through the lone pair of electrons on water as in the case of bromine in the same media. The results presented here, and the stability of other halogen hydrates, were used to test the predictions of simple models and force-field calculations of the host cage-guest association energy.     

Molecular Dynamics Simulation of Structure II Clathrate Hydrates of Xenon and Large Hydrocarbon Guest Molecules

Molecular dynamics (MD) simulations of structure II clathrate hydrates are performed under canonical (NVT) and isobaric–isothermal (NPT) ensembles. The guest molecule as a small help gas is xenon and gases such as cyclopropane, isobutane and propane are used as large hydrocarbon guest molecule (LHGM). The dynamics of structure II clathrate hydrate is considered in two cases: empty small cages and small cages containing xenon. Therefore, the MD results for structure II clathrate hydrates of LHGM and LHGM + Xe are obtained to clarify the effects of guest molecules on host lattice structure. To understand the characteristic configurations of structure II clathrate hydrate the radial distribution functions (RDFs) are calculated for the studied hydrate system. The obtained results indicate the significance of interactions of the guest molecules on stabilizing the hydrate host lattice and these results is consistent with most previous experimental and theoretical investigations.     

Spectroscopic identification of the mixed hydrogen and carbon dioxide clathrate hydrate

In this contribution, we first found the novel clathrate hydrate containing two gaseous guests of hydrogen and carbon dioxide by spectroscopic analysis. X-ray powder diffraction and NMR spectroscopy were used to identify structure and guest distribution of the mixed H2 + CO2 hydrate. X-ray diffraction result confirmed that the unit cell parameter was 11.8602 +/- 0.0010 A, and the formed hydrate was identified as structure I hydrate. 1H magic angle spinning (MAS) NMR and 13C cross-polarization (CP) NMR spectroscopy were used to examine the distribution of hydrogen and carbon dioxide molecules in the cages of structure I, respectively. These NMR spectra showed that carbon dioxide molecules occupied both small 512 cages and large 51262 cages, and hydrogen molecules only were occluded in small 512 cages of structure I. The new finding of the mixed hydrogen hydrate is expected to contribute toward the development of hydrogen production technology and, particularly, inclusion chemistry.     

The nuclear magnetic resonance line shapes of Xe in the cages of clathrate hydrates

We report, for the first time, a prediction of the line shapes that would be observed in the (129)Xe nuclear magnetic resonance (NMR) spectrum of xenon in the cages of clathrate hydrates. We use the dimer tensor model to represent pairwise contributions to the intermolecular magnetic shielding tensor for Xe at a specific location in a clathrate cage. The individual tensor components from quantum mechanical calculations in clathrate hydrate structure I are represented by contributions from parallel and perpendicular tensor components of Xe-O and Xe-H dimers. Subsequently these dimer tensor components are used to reconstruct the full magnetic shielding tensor for Xe at an arbitrary location in a clathrate cage. The reconstructed tensors are employed in canonical Monte Carlo simulations to find the Xe shielding tensor component along a particular magnetic field direction. The shielding tensor component weighted according to the probability of finding a crystal fragment oriented along this direction in a polycrystalline sample leads to a predicted line shape. Using the same set of Xe-O and Xe-H shielding functions and the same Xe-O and Xe-H potential functions we calculate the Xe NMR spectra of Xe atom in 12 distinct cage types in clathrate hydrates structures I, II, H, and bromine hydrate. Agreement with experimental spectra in terms of the number of unique tensor components and their relative magnitudes is excellent. Agreement with absolute magnitudes of chemical shifts relative to free Xe atom is very good. We predict the Xe line shapes in two cages in which Xe has not yet been observed.     

Heat capacity of tetrahydrofuran clathrate hydrate and of its components, and the clathrate formation from supercooled melt

We report a thermodynamic study of the formation of tetrahydrofuran clathrate hydrate by explosive crystallization of water-deficient, near stoichiometric, and water-rich solutions, as well as of the heat capacity, C(p), of (i) supercooled tetrahydrofuran-H2O solutions and of the clathrate hydrate, (ii) tetrathydrofuran (THF) liquid, and (iii) supercooled water and the ice formed on its explosive crystallization. In explosive freezing of supercooled solutions at a temperature below 257 K, THF clathrate hydrate formed first. The nucleation temperature depends on the cooling rate, and excess water freezes on further cooling. The clathrate hydrate melts reversibly at 277 K and C(p) increases by 770 J/mol K on melting. The enthalpy of melting is 99.5 kJ/mol and entropy is 358 J/mol K. Molar C(p) of the empty host lattice is less than that of the ice, which is inconsistent with the known lower phonon frequency of H2O in the clathrate lattice. Analysis shows that C(p) of THF and ice are not additive in the clathrate. C(p) of the supercooled THF-H2O solutions is the same as that of water at 247 K, but less at lower temperatures and more at higher temperatures. The difference tends to become constant at 283 K. The results are discussed in terms of the hydrogen-bonding changes between THF and H2O.     

Raman spectra of vibrational and librational modes in methane clathrate hydrates using density functional theory

The sI type methane clathrate hydrate lattice is formed during the process of nucleation where methane gas molecules are encapsulated in the form of dodecahedron (5(12)CH(4)) and tetrakaidecahedron (5(12)6(2)CH(4)) water cages. The characterization of change in the vibrational modes which occur on the encapsulation of CH(4) in these cages plays a key role in understanding the formation of these cages and subsequent growth to form the hydrate lattice. In this present work, we have chosen the density functional theory (DFT) using the dispersion corrected B97-D functional to characterize the Raman frequency vibrational modes of CH(4) and surrounding water molecules in these cages. The symmetric and asymmetric C-H stretch in the 5(12)CH(4) cage is found to shift to higher frequency due to dispersion interaction of the encapsulated CH(4) molecule with the water molecules of the cages. However, the symmetric and asymmetric O-H stretch of water molecules in 5(12)CH(4) and 5(12)6(2)CH(4) cages are shifted towards lower frequency due to hydrogen bonding, and interactions with the encapsulated CH(4) molecules. The CH(4) bending modes in the 5(12)CH(4) and 5(12)6(2)CH(4) cages are blueshifted, though the magnitude of the shifts is lower compared to modes in the high frequency region which suggests bending modes are less affected on encapsulation of CH(4). The low frequency librational modes which are collective motion of the water molecules and CH(4) in these cages show a broad range of frequencies which suggests that these modes largely contribute to the formation of the hydrate lattice.     

Effect of small cage guests on hydrogen bonding of tetrahydrofuran in binary structure II clathrate hydrates

Molecular dynamics simulations of the pure structure II tetrahydrofuran clathrate hydrate and binary structure II tetrahydrofuran clathrate hydrate with CO(2), CH(4), H(2)S, and Xe small cage guests are performed to study the effect of the shape, size, and intermolecular forces of the small cages guests on the structure and dynamics of the hydrate. The simulations show that the number and nature of the guest in the small cage affects the probability of hydrogen bonding of the tetrahydrofuran guest with the large cage water molecules. The effect on hydrogen bonding of tetrahydrofuran occurs despite the fact that the guests in the small cage do not themselves form hydrogen bonds with water. These results indicate that nearest neighbour guest-guest interactions (mediated through the water lattice framework) can affect the clathrate structure and stability. The implications of these subtle small guest effects on clathrate hydrate stability are discussed.     

The heI photoelectron spectra of the halogen azides,XN3(X = Cl and Br) and the halogen isocyanates,XNCO(X = Cl,Br and I)

High yield routes to the unstable halogen azides and isocyanates have permitted vacuum ultraviolet photoelectron spectra to be obtained for the chlorine and bromine azides, and the chlorine, bromine and iodine isocyanates. The results are compared with ab initio and semi-empirical calculations, leading to a reassignment of the photoelectron spectra of the parent acids, HN₃ and HNCO in the high energy region. The halogen azide and isocyanate photoelectron spectra provide an interesting investigation into how the orbitals of a linear pseudohalide grouping are perturbed by an off-azis halogen atom. A photoelectron spectrum for the unknown molecule FNCO is predicted.     

Spectroscopic observation of atomic hydrogen radicals entrapped in icy hydrogen hydrate

A hydrogen molecule entrapped in the cages of icy hydrogen hydrate is confined in host water framework and thus behaves unlike pure solid or liquid hydrogen. The gamma-irradiated hydrogen radicals are for the first time observed from ESR and solid-state MAS 1H NMR spectra to stably exist in the icy hydrate channels without any collapse of the host framework, confirming the chemical shift consistency of ionized hydrogen derivatives. We discuss the confined icy hydrate channels, which can act as potential storage sites for simultaneously imprisoning both molecular and ionized hydrogen and further as icy nanoreactors.     

水合物CH4-CO2置换的双重机理:空位辅助与竞争

过去的CO2置换甲烷水合物的微观机理研究,主要集中在客体分子(CH4、CO2)之间的交换、占据状态,孤立地研究分解过程或生成过程,忽视主体-客体之间的作用、主体分子(H2O)的空位辅助和客体分子的多重竞争通道。本文基于水合物分解的过冷水及其水空位辅助,以及水合物生成的串滴链及其客体分子竞争的研究,进一步评论水合物CH4-CO2置换的双重机理。然后,对微观机理的动态性和未来研究的相关问题进行讨论。通过综述和评论,文章得出以下初步结果:过冷水通过水空位推动客体分子的跳跃、扩散,实现置换过程的自组装;CO2分子在分解前沿形成一个有序结构的CO2串滴链,其动态性伴随水的组织到获取包合物笼的结构,以及非晶形包合物转变成晶形包合物的生长过程;CO2和CH4在中晶穴中必然产生竞争,并且存在多种竞争类型;成核过程中,不稳定簇导致竞争结构,且有多重竞争通道。最后,结果表明水合物的CH4-CO2置换机理具有双重性,即主体分子的空位辅助和客体分子的竞争,是分解过程和生成过程的自然统一。     

Phase changes of CO2 hydrate under high pressure and low temperature

High pressure and low temperature experiments with CO(2) hydrate were performed using diamond anvil cells and a helium-refrigeration cryostat in the pressure and temperature range of 0.2-3.0 GPa and 280-80 K, respectively. In situ x-ray diffractometry revealed that the phase boundary between CO(2) hydrate and water+CO(2) extended below the 280 K reported previously, toward a higher pressure and low temperature region. The results also showed the existence of a new high pressure phase above approximately 0.6 GPa and below 1.0 GPa at which the hydrate decomposed to dry ice and ice VI. In addition, in the lower temperature region of structure I, a small and abrupt lattice expansion was observed at approximately 210 K with decreasing temperature under fixed pressures. The expansion was accompanied by a release of water content from the sI structure as ice Ih, which indicates an increased cage occupancy. A similar lattice expansion was also described in another clathrate, SiO(2) clathrate, under high pressure. Such expansion with increasing cage occupancy might be a common manner to stabilize the clathrate structures under high pressure and low temperature.     

13C NMR studies of hydrocarbon guests in synthetic structure H gas hydrates: experiment and computation

(13)C NMR chemical shifts were measured for pure (neat) liquids and synthetic binary hydrate samples (with methane help gas) for 2-methylbutane, 2,2-dimethylbutane, 2,3-dimethylbutane, 2-methylpentane, 3-methylpentane, methylcyclopentane, and methylcyclohexane and ternary structure H (sH) clathrate hydrates of n-pentane and n-hexane with methane and 2,2-dimethylbutane, all of which form sH hydrates. The (13)C chemical shifts of the guest atoms in the hydrate are different from those in the free form, with some carbon atoms shifting specifically upfield. Such changes can be attributed to conformational changes upon fitting the large guest molecules in hydrate cages and/or interactions between the guests and the water molecules of the hydrate cages. In addition, powder X-ray diffraction measurements revealed that for the hexagonal unit cell, the lattice parameter along the a-axis changes with guest hydrate former molecule size and shape (in the range of 0.1 ?) but a much smaller change in the c-axis (in the range of 0.01 ?) is observed. The (13)C NMR chemical shifts for the pure hydrocarbons and all conformers were calculated using the gauge invariant atomic orbital method at the MP2/6-311+G(2d,p) level of theory to quantify the variation of the chemical shifts with the dihedral angles of the guest molecules. Calculated and measured chemical shifts are compared to determine the relative contribution of changes in the conformation and guest-water interactions to the change in chemical shift of the guest upon clathrate hydrate formation. Understanding factors that affect experimental chemical shifts for the enclathrated hydrocarbons will help in assigning spectra for complex hydrates recovered from natural sites.     

A molecular dynamics study of ethanol-water hydrogen bonding in binary structure I clathrate hydrate with CO2

Guest-host hydrogen bonding in clathrate hydrates occurs when in addition to the hydrophilic moiety which causes the molecule to form hydrates under high pressure-low temperature conditions, the guests contain a hydrophilic, hydrogen bonding functional group. In the presence of carbon dioxide, ethanol clathrate hydrate has been synthesized with 10% of large structure I (sI) cages occupied by ethanol. In this work, we use molecular dynamics simulations to study hydrogen bonding structure and dynamics in this binary sI clathrate hydrate in the temperature range of 100-250 K. We observe that ethanol forms long-lived (>500 ps) proton-donating and accepting hydrogen bonds with cage water molecules from both hexagonal and pentagonal faces of the large cages while maintaining the general cage integrity of the sI clathrate hydrate. The presence of the nondipolar CO(2) molecules stabilizes the hydrate phase, despite the strong and prevalent alcohol-water hydrogen bonding. The distortions of the large cages from the ideal form, the radial distribution functions of the guest-host interactions, and the ethanol guest dynamics are characterized in this study. In previous work through dielectric and NMR relaxation time studies, single crystal x-ray diffraction, and molecular dynamics simulations we have observed guest-water hydrogen bonding in structure II and structure H clathrate hydrates. The present work extends the observation of hydrogen bonding to structure I hydrates.     

模板分子TMEDA在CF-3及ZSM-39沸石笼中的位置及其与骨架的相互作用

用XRD、FTIR、IG-DTA、~(13)C魔角固体核磁共振表征了用四甲基乙基二胺(TMEDA)为结构异向剂合成的高硅沸石CF-3及ZSM-39.TMEDA不同基团的~(13)C化学位移,共振峰相对强度在交叉极化(CP)及高功率去偶(HPDEC)核磁共振谱中的变化,揭示出模板分子在尺寸不同的沸石笼中的位置、运动状态及其与骨架的相互作用.在ZSM-39沸石中的TMEDA分子,它的-C_2H_4-基团~(13)C共振峰明显窄化,向高场的异常位移以及它与-CH_3基团~(13)C共振峰相对强度在CP及HPDEC谱中的明显变化,说明为2个相邻的[5~(12)6~4]笼所共有的TMEDA分子,其-C_2H_4-基团与这2个笼所共用的六氧元环的氧原子有强烈的相互作用.     

氮气笼型水合物的激光拉曼光谱

在253K和16MPa的压力下,于实验室内合成了氮气水合物,用显微共焦拉曼光谱对其N-N和O-H键伸缩振动的光谱特征进行了研究．结果表明,氮气水合物中的N-N和O—H键的拉曼峰分别为2322．4和3092．1cm^-1,与天然的空气水合物中的数据十分接近．另外,还测定了液氮和溶解于水中的氮分子中N—N键的拉曼峰值,分别为2326．6和2325．0cm^-1．氮气笼型水合物分解的拉曼谱图表明,氮分子同时进入水合物的大笼和小笼中,但由于氮分子在大、小笼中的环境氛围十分接近,其拉曼位移相差不大,故拉曼谱图只能显示N—N键伸缩振动一个峰．     

Molecular vibrations of methane molecules in the structure I clathrate hydrate from ab initio molecular dynamics simulation

Vibrational frequencies of guest molecules in clathrate hydrates reflect the molecular environment and dynamical behavior of molecules. A detailed understanding of the mechanism for the vibrational frequency changes of the guest molecules in the clathrate hydrate cages is still incomplete. In this study, molecular vibrations of methane molecules in a structure I clathrate hydrate are calculated from ab initio molecular dynamics simulation. The vibrational spectra of methane are computed by Fourier transform of autocorrelation functions, which reveal distinct separation of each vibrational mode. Calculated symmetric and asymmetric stretching vibrational frequencies of methane molecules are lower in the large cages than in the small cages (8 and 16 cm(-1) for symmetric and asymmetric stretching, respectively). These changes are closely linked with the C-H bond length. The vibrational frequencies for the bending and rocking vibrational modes nearly overlap in each of the cages.     

Time-resolved in situ neutron diffraction studies of gas hydrate: transformation of structure II (sII) to structure I (sI).

We report the in situ observation from diffraction data of the conversion of a gas hydrate with the structure II (sII) lattice to one with the structure I (sI) lattice. Initially, the in situ formation, dissociation, and reactivity of argon gas clathrate hydrate was investigated by time-of-flight neutron powder diffraction at temperatures ranging from 230 to 263 K and pressures up to 5000 psi (34.5 MPa). These samples were prepared from deuterated ice crystals and transformed to hydrate by pressurizing the system with argon gas. Complete transformation from D(2)O ice to sII Ar hydrate was observed as the sample temperature was slowly increased through the D(2)O ice melting point. The transformation of sII argon hydrate to sI hydrate was achieved by removing excess Ar gas and exposing the hydrate to liquid CO(2) by pressurizing the Ar hydrate with CO(2). Results suggest the sI hydrate formed from CO(2) exchange in argon sII hydrate is a mixed Ar/CO(2) hydrate. The proposed exchange mechanism is consistent with clathrate hydrate being an equilibrium system in which guest molecules are exchanging between encapsulated molecules in the solid hydrate and free molecules in the surrounding gas or liquid phase.     

Calorimetric study on pure and KOH-doped argon clathrate hydrates

Pure and KOH (x=1.3×10^?3)-doped argon clathrate hydrates were synthesized in an adiabatic high-pressure calorimetric cell from one mole of water and 200 MPa of Ar gas. The heat capacities of the hydrates were measured from 12 to 130 K. No anomaly was found in the pure sample but a glass transition considered to be related to a proton-configurational mode of the host hydrogen-bonded lattice was observed for the first time at 55 K in the doped sample. Comparison with the results on pure and KOH-doped tetrahydrofuran clathrate hydrates indicated that the thermodynamic properties of a hydrogen-bonded system depend on the kind of guest molecule. The heat capacity of argon in the hydrate cages was adequately analyzed with the one-dimensional Pöschl-Teller potential as used in the Ar-β-quinol clathrate and the addivity of heat capacities of the guest and host was shown to be valid in the temperature range 12–130 K.     

Cage occupancies in the high pressure structure H methane hydrate: a neutron diffraction study

A neutron diffraction study was performed on the CD(4) : D(2)O structure H clathrate hydrate to refine its CD(4) fractional cage occupancies. Samples of ice VII and hexagonal (sH) methane hydrate were produced in a Paris-Edinburgh press and in situ neutron diffraction data collected. The data were analyzed with the Rietveld method and yielded average cage occupancies of 3.1 CD(4) molecules in the large 20-hedron (5(12)6(8)) cages of the hydrate unit cell. Each of the pentagonal dodecahedron (5(12)) and 12-hedron (4(3)5(6)6(3)) cages in the sH unit cell are occupied with on average 0.89 and 0.90 CD(4) molecules, respectively. This experiment avoided the co-formation of Ice VI and sH hydrate, this mixture is more difficult to analyze due to the proclivity of ice VI to form highly textured crystals, and overlapping Bragg peaks of the two phases. These results provide essential information for the refinement of intermolecular potential parameters for the water-methane hydrophobic interaction in clathrate hydrates and related dense structures.     

Phase Transition of a Structure II Cubic Clathrate Hydrate to a Tetragonal Form

The crystal structure and phase transition of cubic structure II (sII) binary clathrate hydrates of methane (CH₄) and propanol are reported from powder X‐ray diffraction measurements. The deformation of host water cages at the cubic–tetragonal phase transition of 2‐propanol+CH₄ hydrate, but not 1‐propanol+CH₄ hydrate, was observed below about 110 K. It is shown that the deformation of the host water cages of 2‐propanol+CH₄ hydrate can be explained by the restriction of the motion of 2‐propanol within the 5¹²6⁴ host water cages. This result provides a low‐temperature structure due to a temperature‐induced symmetry‐lowering transition of clathrate hydrate. This is the first example of a cubic structure of the common clathrate hydrate families at a fixed composition.