Force field for platinum binding to adenine

The antitumor drug cis-diamminedichloroplatinum(II) (cisplatin) binds preferentially to GpG and ApG sequences of DNA, forming N7,N7 intrastrand chelates. Molecular modeling of the intrastrand adducts have been handicapped, so far, by the lack of force-field data describing the Pt–guanine and Pt–adenine binding. We used ab initio calculations with relativistic pseudopotentials to evaluate three important parameters for the platinum–adenine model complex [Pt(NH₃)₃(Ade)]²⁺: (1) the force constant for the Pt? N7 bond bending out of the adenine plane; (2) the energy profile for the torsion about Pt? N7; (3) a set of fractional atomic charges that reproduce the ab initio potential for a number of space points placed around the adduct. A population analysis and comparative study on the tetrammine complex [Pt(NH₃)₄]²⁺ have shown that for platinum adenine is a better σ-donor than NH₃, but its capacity as a π-acceptor is weak. © 1993 John Wiley & Sons, Inc.     

Crystal Structures of (PPh3)2Pd(N3)2, (AsPh3)2Pd(N3)2, (2‐Chloropyridine)2Pd(N3)2, [(AsPh4)2][Pd2(N3)4Cl2], [(PNP)2][Pd(N3)4], [(AsPh4)2][Pt(N3)4] · 2 H2O,and [(AsPh4)2][Pt(N3)6]

The crystal structures of the monomeric palladium(II) azide complexes of the type L₂Pd(N₃)₂ (L = PPh₃ ( 1 ), AsPh₃ ( 2 ), and 2‐chloropyridine ( 3 )), the dimeric [(AsPh₄)₂][Pd₂(N₃)₄Cl₂] ( 4 ), the homoleptic azido palladate [(PNP)₂][Pd(N₃)₄] ( 5 ) and the homoleptic azido platinates [(AsPh₄)₂][Pt(N₃)₄] · 2 H₂O ( 6 ) and [(AsPh₄)₂][Pt(N₃)₆] ( 7 ) were determined by X‐ray diffraction at single crystals. 1 and 2 are isotypic and crystallize in the triclinic space group P1. 1 , 2 and 3 show terminal azide ligands in trans position. In 4 the [Pd₂(N₃)₄Cl₂]^2– anions show end‐on bridging azide groups as well as terminal chlorine atoms and azide ligands. The anions in 5 and 6 show azide ligands in equal positions with almost local C_4h symmetry at the platinum and palladium atom respectively. The metal atoms show a planar surrounding. The [Pt(N₃)₆]^2– anions in 7 are centrosymmetric (idealized S₆ symmetry) with an octahedral surrounding of six nitrogen atoms at the platinum centers.     

Heteronukleare Komplexverbindungen mit Metall—Metall-Bindungen. IX [1]. Amin-kupfer(I)-carbonylmetallate mit Cobalt,Eisen oder Mangan

Heteronuclear Coordination Compounds with Metal—Metal Bonds. IX. Amine Copper(I) Carbonyl Metalates with Cobalt, Iron, or Manganese Colourless crystals of the carbonyl copper complex [(NH₃)₃(CO)Cu][Co(CO)₄] ( 1 a ) are formed in the reaction of [Cu(NH₃)₄]Cl and Na[Co(CO)₄] (T < ? 8°C, p_CO = 1 bar); above ?5°C and under N₂-atmosphere 1 a converts to [(NH₃)₂CuCo(CO)₄] ( C ), which serves as a starting material for the synthesis of new copper cobaltates: the amines N-amino piperidine, N,N-dimethyl ethylenediamine (dmed) and N-benzyl N,N′-dimethyl ethylenediamine (bn-dmed) replace NH₃ to form [(C₅H₁₀N? NH₂)₃CuCo(CO)₄] ( 1 b ), [(dmed)CuCo(CO)₄] ( 1 c ), [(bn-dmed)CuCo(CO)₄] ( 1 d ) the Cu? Co-bond remaining intact. [(NH₃)₂CuFe(CO)₃NO] ( 2 a ) is isosteric with C ; it is synthesized from [Cu(NH₃)₄]Cl and Na[Fe(CO)₃NO] in aqueous solution; 2 a reacts with N,N,N′,N′-tetramethyl ethylenediamine (tmed) to form [(tmed)(NH₃)CuFe(CO)₃NO] ( 2b ). The [Mn(CO)₅]^? ion reacts with ammine copper ions to form the tetranuclear cluster [{(NH₃)CuMn(CO)₅}₂] ( 3 ). All new compounds have been investigated by X-ray structure analysis.     

Ring‐Size‐Modulated Reactivity of Putative Dicobalt‐Bridging Nitrides: C−H Activation versus Phosphinimide Formation

Dicobalt complexes supported by flexible macrocyclic ligands were used to target the generation of the bridging nitrido species [(ⁿ PDI₂)Co₂(μ‐N)(PMe₃)₂]³⁺ (PDI=2,6‐pyridyldiimine; n =2, 3, corresponding to the number of catenated methylene units between imino nitrogen atoms). Depending on the size of the macrocycle and the reaction conditions (solution versus solid‐state), the thermolysis of azide precursors yielded bridging phosphinimido [(²PDI₂)Co₂(μ‐NPMe₃)(PMe₃)₂]³⁺, amido [(ⁿ PDI₂)Co₂(μ‐NH₂)(PMe₃)₂]³⁺ (n =2, 3), and C−H amination [(³PDI₂*‐μ‐NH)Co₂(PMe₃)₂]³⁺ products. All results are consistent with the initial formation of [(ⁿ PDI₂)Co₂(μ‐N)(PMe₃)₂]³⁺, followed by 1) PMe₃ attack on the nitride, 2) net hydrogen‐atom transfer to form N−H bonds, or 3) C−H amination of the alkyl linker of the ⁿ PDI₂ ligand.     

顺铂与DNA键合机制的CNDO/2研究

本文用CNDO/2法研究了顺铂与DNA键合的机制.计算结果指出,在所考虑的几个模型配合物中,从Pt-N_7间重叠集居和双原子能分析,以顺铂与两个鸟嘌呤的N_7键合形成[(NH_3)_2PtG_2]~(2 )的可能性最大,因而支持了顺铂和DNA的相邻两个鸟嘌呤的N_7键合的链内交联机制.但是,螯合机理不能完全排除,在一定条件下,顺铂可能与一个鸟嘌呤的N_7和O键合形成一定量的螯合物.然而,由于它较[(NH_3)_2PtG_2]~(2 )不稳定,因此,不能成为顺铂伤害癌细胞的主要原因.至于链内交联机理如何造成DNA复制障碍尚待进一步研究.     

Controlled Aggregation of Multiple Guanidinium Ions through a Hydrogen‐Bonded Network Assembly with Deprotonated Forms of Kemp’s Triacid

A series of five complexes that incorporate the guanidinium ion and various deprotonated forms of Kemp’s triacid (H₃KTA) have been synthesized and characterized by single‐crystal X‐ray analysis. The complex [C(NH₂)₃⁺] ? [H₂KTA^?] ( 1 ) exhibits a sinusoidal layer structure with a centrosymmetric pseudo‐rosette motif composed of two ion pairs. The fully deprotonated Kemp’s triacid moiety in 3 [C(NH₂)₃⁺] ? [KTA^3?] ( 2 ) forms a record number of eighteen acceptor hydrogen bonds, thus leading to a closely knit three‐dimensional network. The KTA^3? anion adopts an uncommon twist conformation in [(CH₃)₄N⁺] ? 2 [C(NH₂)₃⁺] ? [KTA^3?] ? 2 H₂O ( 3 ). The crystal structure of [(nC₃H₇)₄N⁺] ? 2 [C(NH₂)₃⁺] ? [KTA^3?] ( 4 ) features a tetrahedral aggregate of four guanidinium ions stabilized by an outer shell that comprises six equatorial carboxylate groups that belong to separate [KTA^3?] anions. In 3 [(C₂H₅)₄N⁺] ? 20 [C(NH₂)₃⁺] ? 11 [HKTA^2?] ? [H₂KTA^?] ? 17 H₂O ( 5 ), an even larger centrosymmetric inner core composed of eight guanidinium ions and six bridging water molecules is enclosed by a crust composed of eighteen axial carboxyl/carboxylate groups from six HKTA^2? anions.     

Quantum chemical study of the magnetic properties and electronic structure of the Creutz-Taube ion [(NH3)5Ru-pyz-Ru(NH3)5]5+

A method is developed of calculating the g-tensor from the results of quantum chemical calculations by semiempirical methods in a many-electron approximation. Calculations are performed for the g-tensors of the ruthenium complexes [(NH₃)₅Ru-pyz-Ru(NH₃)₅]⁵⁺ and [NH ₃Ru-pyz]³⁺. A comparison between the experimental and calculated g-factors of the Creutz-Taube ion [(NH₃)₅Ru-pyz-Ru(NH₃)₅]⁵⁺ allows one to conclude that the electronic structure of this ion is localized.     

Electronic structure and spectra of [Ru(NH3)5pyz]2+ and [(NH3)5Ru-pyz-Ru(NH3)5]4+

The electronic structure and spectra of [Ru(NH₃)₅pyz]²⁺ and [(NH₃)₅Ru-pyz-Ru(NH₃)₅]⁴⁺ are calculated by the INDO (CINDO-E/S) method. Changes in molecular orbitals, charge distributions, and bond order indices of the pyrazine molecule and [Ru(NH₃)₅pyz]²⁺ complex in the [(NH₃)₅Ru-pyz-Ru(NH₃)₅]⁴⁺ binuclear complex are analyzed. St. Petersburg State University. Translated fromZhurnal Strukturnoi Khimii, Vol. 35, No. 4, pp. 12–23, July–August, 1994. Translated by. O. Kharlamova     

Intramolecular electron transfer in mixed-valence complexes [(NH3)5Ru-L-Ru(NH3)5]5+ (L = N2, pyz, pym, 4,4′-bipy, bpa)

The dynamics of the intramolecular electron transfer from Ru(II) to Ru(III) in binuclear mixedvalence complexes [(NH₃)₅Ru-L- Ru(NH₃)₅]⁵⁺ (L = N₂,pyz, bipy, pym, bpa) is analyzed by the semiempirical CINDO +CI method. Translated fromZhumal Strukturnoi Khimii, Vol. 39, No. 4, pp. 579–590, July–August, 1998.     

A perchlorate-promoted electrochemically induced nitride coupling reaction

The osmium nitride complex [Os^VI(NH₃)₄N]³⁺ undergoes a one-electron reduction in acetonitrile to give [Os^V(N)(NH₃)₄]²⁺, which further reacts by nitride coupling to give the μ-dinitrogen osmium complex [(CH₃CN)(NH₃)₄Os^II(N₂)Os^II(NH₃)₄(CH₃CN)]⁴⁺. The formation of the μ-dinitrogen osmium complex is promoted by the presence of perchlorate anion, which causes the deposition of [(CH₃CN)(NH₃)₄Os^II(N₂)Os^II(NH₃)₄(CH₃CN)](ClO₄)₄ on the electrode surface upon repetitive voltammetric scans.     

Kinetics and Mechanism of Oxidation of S2O32− by a Co‐Bound μ‐Amido‐μ‐Superoxo Complex

In acetate buffer media (pH 4.5–5.4) thiosulfate ion (S₂O₃^2?) reduces the bridged superoxo complex, [(NH₃)₄Co^III(μ‐NH₂,μ‐O₂)Co^III(NH₃)₄]⁴⁺ ( 1 ) to its corresponding μ‐peroxo product, [(NH₃)₄Co^III(μ‐NH₂,μ‐O₂)Co^III(NH₃)₄]³⁺ ( 2 ) and along a parallel reaction path, simultaneously S₂O₃^2? reacts with 1 to produce the substituted μ‐thiosulfato‐μ‐superoxo complex, [(NH₃)₄Co^III(μ‐S₂O₃,μ‐O₂)Co^III(NH₃)₄]³⁺ ( 3 ). The formation of μ‐thiosulfato‐μ‐superoxo complex ( 3 ) appears as a precipitate which on being subjected to FTIR shows absorption peaks that support the presence of Co(III)‐bound S‐coordinated S₂O₃^2? group. In reaction media, 3 readily dissolves to further react with S₂O₃^2? to produce μ‐thiosulfato‐μ‐peroxo product, [(NH₃)₄Co^III(μ‐S₂O₃,μ‐O₂)Co^III(NH₃)₄]²⁺ ( 4 ). The observed rate (k₀) increases with an increase in [T_Thio] ([T_Thio] is the analytical concentration of S₂O₃^2?) and temperature (T), but it decreases with an increase in [H⁺] and the ionic strength (I). Analysis of the log A_t versus time data (A is the absorbance of 1 at time t) reveals that overall the reaction follows a biphasic consecutive reaction path with rate constants k₁ and k₂ and the change of absorbance is equal to {a₁ exp(–k₁t) + a₂ exp(–k₂t)}, where k₁ > k₂.     

Mehrkernige Kobaltkomplexe. II. Herstellung und Struktur von [(tren) (NH3)Co(O2)Co(NH3) (tren)](SCN)4 · 2H2O

Polynuclear Cobalt Complexes. II. Preparation and Structure of [(tren) (NH₃)Co(O₂)Co(NH₃) (tren)](SCN)₄ · 2H₂O The title compound is obtained on oxygenation of [Co(tren)(H₂O)₂]²⁺ in 6M aqueous ammonia or by ligand exchange starting from [(NH₃)₅Co(O₂)Co(NH₃)₅]-(NO₃)₄. An X-ray structure determination was made. The substance forms monoclinic crystals, space group P2₁/c, lattice constants a=10,135, b=8,473, c=19,484 Å, β=108,58°, with two formula units in the cell. The final R is 0,066. The binuclear cation has a center of symmetry, so the Co? O? O? Co unit is planar; the Co? O? O angle is 111,5°. The tertiary nitrogen atoms of both chelate groups are cis to the O₂ bridge, as found in doubly bridged [(tren)Co(O₂,OH)Co(tren)](ClO₄)₃ · 3H₂O. On acidification in solution, the singly bridged cation [(tren) (NH₃)CoO₂Co(NH₃)(tren)]⁴⁺ (a) loses the bound O₂ completely. But unlike the doubly bridged cation b , the rate of dissociation of a is independent of pH (Fig. 5). At higher pH (8–10) bridging a→b (Fig. 2) occurs. Both reactions must have the same rate determining step, the first order rate constants being of the order of 2 · 10^?3 s^?1 (25°, 0,35M KCl).     

Strain energy minimization study of the mechanism of,and the barrier to,conformational interconversion in five-membered diamine chelate rings

The method of Lagrangian multipliers is used to constrain torsion angles during molecular mechanics refinement for the purpose of plotting strain energy against a reaction coordinate. A complete two-dimensional analysis of the conformational interconversion from δ- to λ-[Co(ethane-1,2-diamine) (NH₃)₄]³⁺ reveals a mechanism in which the transition state geometry has an envelope conformation and an inversion barrier of 15.7 kJ mol^?1. Substitution at the carbon atoms, variation of the metal-nitrogen distance, and replacement of the amine ligands with bidentate amines only slightly alters the inversion barrier. Substitution at the nitrogen atoms of the bidentate ligand increases the inversion barrier significantly to 24.6 kJ mol^?1 for (N,N,N′,N′-tetramethylethane-1,2-diamine) [(NH₃)₄]³⁺.     

Bis(ammonium) tris­(hexa­aqua­magnesium) tetra­kis(hydrogen phosphite)

The structure of the title compound, (NH₄)₂[Mg(H₂O)₆]₃(HPO₃)₄, consists of [Mg(H₂O)₆]²⁺ and (NH₄)⁺ cations and (HPO₃)²⁻ anions held together by an intricate network of hydrogen bonds involving all H atoms except for one linked directly to a P atom. The Mg²⁺ cations are octa­hedrally coordinated by six water mol­ecules. One of the Mg atoms is located on a site with 2/m symmetry, whereas the other Mg atom and the P and N atoms occupy sites with m symmetry.     

Propane‐1,2‐diammonium tetrafluoroberyllate

Cocrystallization of the inorganic [BeF₄]^2? unit with the organic moiety [NH₃CH₂CH(NH₃)CH₃]²⁺ results in the three‐dimensional network of the title compound, (C₃H₁₂N₂)[BeF₄] or C₃H₁₂N₂²⁺·BeF₄^2?, created by hydrogen bonds between the protonated ammonium groups and the highly electronegative F atoms of the anion. The structure is described in terms of layers related to each other by crystallographic centres of symmetry.     

A one‐dimensional chloride‐bridged PtII/PtIV mixed‐valence complex with a 4‐[(4‐hydroxyphenyl)diazenyl]benzenesulfonate counter‐ion

The title compound, catena‐poly[[[bis(ethylenediamine‐κ²N,N′)platinum(II)]‐ μ‐chlorido‐[bis(ethylenediamine)platinum(IV)]‐μ‐chlorido] tetrakis{4‐[(4‐hydroxyphenyl)diazenyl]benzenesulfonate} dihydrate], {[Pt^IIPt^IVCl₂(C₂H₈N₂)₄](HOC₆H₄N=NC₆H₄SO₃)₄·2H₂O}_n, has a linear chain structure composed of square‐planar [Pt(en)₂]²⁺ (en is ethylenediamine) and elongated octahedral trans‐[PtCl₂(en)₂]²⁺ cations stacked alternately, bridged by Cl atoms, along the b axis. The Pt atoms are located on an inversion centre, while the Cl atoms are disordered over two sites and form a zigzag ...Cl—Pt^IV—Cl...Pt^II... chain, with a Pt^IV—Cl bond length of 2.3140 (14) Å, an interatomic Pt^II...Cl distance of 3.5969 (15) Å and a Pt^IV—Cl...Pt^II angle of 170.66 (6)°. The structural parameter indicating the mixed‐valence state of the Pt atom, expressed by δ = (Pt^IV—Cl)/(Pt^II...Cl), is 0.643.     

Mixed Adenine/Guanine Quartets with Three trans‐a2PtII (a=NH3 or MeNH2) Cross‐Links: Linkage and Rotational Isomerism,Base Pairing,and Loss of NH3

Of the numerous ways in which two adenine and two guanines (N9 positions blocked in each) can be cross‐linked by three linear metal moieties such as trans‐a₂Pt^II (with a=NH₃ or MeNH₂) to produce open metalated purine quartets with exclusive metal coordination through N1 and N7 sites, one linkage isomer was studied in detail. The isomer trans,trans,trans‐[{Pt(NH₃)₂(N7‐9‐EtA‐N1)₂}{Pt(MeNH₂)₂(N7‐9‐MeGH)}₂][(ClO₄)₆] ? 3H₂O ( 1 ) (with 9‐EtA=9‐ethyladenine and 9‐MeGH=9‐methylguanine) was crystallized from water and found to adopt a flat Z‐shape in the solid state as far as the trinuclear cation is concerned. In the presence of excess 9‐MeGH, a meander‐like construct, trans,trans,trans‐[{Pt(NH₃)₂(N7‐9‐EtA‐N1)₂}{Pt(MeNH₂)₂(N7‐9‐MeGH)₂}][(ClO₄)₆] ? [(9‐MeGH)₂] ? 7 H₂O ( 2 ) is formed, in which the two extra 9‐MeGH nucleobases are hydrogen bonded to the two terminal platinated guanine ligands of 1 . Compound 1 , and likewise the analogous complex 1 a (with NH₃ ligands only), undergo loss of an ammonia ligand and formation of NH₄⁺ when dissolved in [D₆]DMSO. From the analogy between the behavior of 1 and 1 a it is concluded that a NH₃ ligand from the central Pt atom is lost. Addition of 1‐methylcytosine (1‐MeC) to such a DMSO solution reveals coordination of 1‐MeC to the central Pt. In an analogous manner, 9‐MeGH can coordinate to the central Pt in [D₆]DMSO. It is proposed that the proton responsible for formation of NH₄⁺ is from one of the exocyclic amino groups of the two adenine bases, and furthermore, that this process is accompanied by a conformational change of the cation from Z‐form to U‐form. DFT calculations confirm the proposed mechanism and shed light on possible pathways of this process. Calculations show that rotational isomerism is not kinetically hindered and that it would preferably occur previous to the displacement of NH₃ by DMSO. This displacement is the most energetically costly step, but it is compensated by the proton transfer to NH₃ and formation of U(?H⁺) species, which exhibits an intramolecular hydrogen bond between the deprotonated N6H^? of one adenine and the N6H₂ group of the other adenine. Finally the question is examined, how metal cross‐linking patterns in closed metallacyclic quartets containing two adenine and two guanine nucleobases influence the overall shape (square, rectangle, trapezoid) and the planarity of a metalated purine quartet.     

The Crystal Structure of [Pt(NH3)4][PtI4]: Comparison with Magnus' Green Salt

The structure of the compound [Pt(NH₃)₄][PtI₄] was studied by X‐ray diffractometry at 293 K (r. t.) and at 173 K. The structure is isotypic with that of Magnus' green salt and is unchanged at low temperature except for a slight contraction of the unit cell [tetragonal, P4/mnc; a = b = 9.8024(10) and c = 6.9311(10)Å at r. t; a = b = 9.764(3), c = 6.875(3)Å at 173 K]. It consists of [Pt(NH₃)₄]²⁺ cations and [PtI₄]^2? anions in which the platinum atoms are tetracoordinated by four ammine N or four I atoms in square‐planar arrangements. At 173 K the intramolecular bond lengths are hardly modified, but the intermolecular stacking interaction Pt‐Pt is slightly shortened.     

A Novel Keggin Units-Supported Complex: Synthesis,Characterization and Crystal Structure of [(CH3)2NH2]6[Cu(DMF)4(GeW12O40)2] · 2DMF

A novel hybrid compound, [(CH₃)₂NH₂]₆[Cu(DMF)₄(GeW₁₂O₄₀ ^4-)₂] [sdot] 2DMF, has been synthesized from H₄GeW₁₂O₄₀ [sdot] n H₂O, CuCl₂ and N, N -dimethylformamide (DMF) in aqueous solution and characterized by elemental analysis, UV and IR spectra. Single crystal X-ray structure analysis shows that the crystal consists of a α-Keggin heteropolyanion-supported anion [Cu(DMF)₄(GeW₁₂O₄₀ ^4-)₂], two free N, N-dimethylformamide molecules, six protonated dimethylamine (DMA) molecules, and that the coordinating atoms of DMF are the oxygen atoms of C=O group. Thermal analysis indicates that the thermal stability of the GeW₁₂O₄₀ ^4- anion in the title compound is stronger than that in acid.     

HPLC Method for the Determination of the Purity of K[Pt(NH3)Cl3], a Precursor of the Platinum Complexes with Cytostatic Activity

K[Pt(NH₃)Cl₃], a valuable precursor for the preparation of platinum complexes with cytostatic activity, e.g. satraplatin, picoplatin, LA-12 and cycloplatam, is currently prepared from cis-[Pt(NH₃)₂Cl₂] or K₂[PtCl₄] and these are the usual impurities in the final product. A simple, selective and sensitive HPLC-UV analytical method for the determination of the purity of K[Pt(NH₃)Cl₃] and the quantification of the impurities has been developed and validated. The platinum complexes present in the final product were separated on a strong base ion exchange column by the gradient elution with detection at 213 nm. Intra-assay precisions for the platinum complexes respective to their ions ([PtCl₄]^2?, [Pt(NH₃)Cl₃]^? and cis-[Pt(NH₃)₂Cl₂]) were between 0.1 and 2.0% (relative standard deviation); intermediate precisions were between 1.4 and 2.0% and accuracies were between 98.6 and 101.4%. Limits of detection of [PtCl₄]^2?, [Pt(NH₃)Cl₃]^? and cis-[Pt(NH₃)₂Cl₂] were 6 µg · ml^?1, 13 mg · ml^?1 and 5 µg · ml^?1 respectively, limits of quantification of [PtCl₄]^2?, [Pt(NH₃)Cl₃]^? and cis-[Pt(NH₃)₂Cl₂] were 51 µg · ml^?1, 55 mg · ml^?1 and 20 µg · ml^?1 respectively.