SF-[2]R12: a spin-adapted explicitly correlated method applicable to arbitrary electronic states

The [2](R12) method [M. Torheyden and E. F. Valeev, J. Chem. Phys. 131, 171103 (2009)] is an explicitly correlated perturbative correction that can greatly reduce the basis set error of an arbitrary electronic structure method for which the two-electron density matrix is available. Here we present a spin-adapted variant (denoted as SF-[2](R12)) that is formulated completely in terms of spin-free quantities. A spin-free cumulant decomposition and multi-reference generalized Brillouin condition are used to avoid three-particle reduced density matrix completely. The computational complexity of SF-[2](R12) is proportional to the sixth power of the system size and is comparable to the cost of the single-reference MP2-R12 method. The SF-[2](R12) method is shown to decrease greatly the basis set error of multi-configurational wave functions.     

Ab initio potential energy surfaces, bound states, and electronic spectrum of the Ar-SH complex

New ab initio potential energy surfaces for the (2)Pi ground electronic state of the Ar-SH complex are presented, calculated at the RCCSD(T)/aug-cc-pV5Z level. Weakly bound rotation-vibration levels are calculated using coupled-channel methods that properly account for the coupling between the two electronic states. The resulting wave functions are analyzed and a new adiabatic approximation including spin-orbit coupling is proposed. The ground-state wave functions are combined with those obtained for the excited (2)Sigma(+) state [D. M. Hirst, R. J. Doyle, and S. R. Mackenzie, Phys. Chem. Chem. Phys. 6, 5463 (2004)] to produce transition dipole moments. Modeling the transition intensities as a combination of these dipole moments and calculated lifetime values [A. B. McCoy, J. Chem. Phys. 109, 170 (1998)] leads to a good representation of the experimental fluorescence excitation spectrum [M.-C. Yang, A. P. Salzberg, B.-C. Chang, C. C. Carter, and T. A. Miller, J. Chem. Phys. 98, 4301 (1993)].     

Intracule functional models. V. Recurrence relations for two-electron integrals in position and momentum space

The approach used by Ahlrichs [Phys. Chem. Chem. Phys., 2006, 8, 3072] to derive the Obara-Saika recurrence relation (RR) for two-electron integrals over Gaussian basis functions, is used to derive an 18-term RR for six-dimensional integrals in phase space and 8-term RRs for three-dimensional integrals in position or momentum space. The 18-term RR reduces to a 5-term RR in the special cases of Dot and Posmom intracule integrals in Fourier space. We use these RRs to show explicitly how to construct Position, Momentum, Omega, Dot and Posmom intracule integrals recursively.     

A semiclassical hybrid approach to many particle quantum dynamics

We analytically derive a correlated approach for a mixed semiclassical many particle dynamics, treating a fraction of the degrees of freedom by the multitrajectory semiclassical initial value method of Herman and Kluk [Chem. Phys. 91, 27 (1984)] while approximately treating the dynamics of the remaining degrees of freedom with fixed initial phase space variables, analogously to the thawed Gaussian wave packet dynamics of Heller [J. Chem. Phys. 62, 1544 (1975)]. A first application of this hybrid approach to the well studied Secrest-Johnson [J. Chem. Phys. 45, 4556 (1966)] model of atom-diatomic collisions is promising. Results close to the quantum ones for correlation functions as well as scattering probabilities could be gained with considerably reduced numerical effort as compared to the full semiclassical Herman-Kluk approach. Furthermore, the harmonic nature of the different degrees of freedom can be determined a posteriori by comparing results with and without the additional approximation.     

On the electron-electron counterbalance hole

When a many-electron system has spatial inversion symmetry, the electron-electron counterbalance hole implies that two electrons with parallel spins cannot be at opposite positions with respect to the inversion center, and its presence was pointed out in the literature [T. Koga, J. Chem. Phys. 108, 2515 (1998)] for any pairs of Hartree-Fock orbitals with the same inversion parity. We report here a generalized result that in all two-electron systems with spatial inversion symmetry, the electron-electron counterbalance hole always exists for any approximate and exact wave functions with even inversion parity. The same is also true in momentum space. An extension of the hole to systems with three or more electrons is discussed.     

Correlation effects in molecular conductors

The source-sink potential (SSP) model introduced previously [F. Goyer, M. Ernzerhof, and M. Zhuang, J. Chem. Phys. 126, 144104 (2007)] enables one to eliminate the semi-infinite contacts in molecular electronic devices (MEDs) in favor of complex potentials. SSP has originally been derived for independent electrons and extended to interacting two-electron systems subsequently [A. Goker, F. Goyer, and M. Ernzerhof, J. Chem. Phys. 129, 194901 (2008)]. Here we generalize SSP to N-electron systems and consider the impact of electron correlation on the transmission probability. In our correlated method for molecular conductors, the molecular part of the Hu?ckel Hamiltonian of the original SSP is replaced by the Hubbard Hamiltonian. For the contacts, however, the single-electron picture is retained and they are assumed to be spin polarized. Using our method, we study electron transmission in molecular wires, cross-conjugated chains, as well as aromatic systems. We find that, for realistic values of the electron-electron repulsion parameter, correlation effects modify the transmission probability quantitatively, the qualitative features remain. However, we find subtle new effects in correlated MEDs, such as Coulomb drag, that are absent in uncorrelated systems.     

Strong correlation in acene sheets from the active-space variational two-electron reduced density matrix method: effects of symmetry and size

Polyaromatic hydrocarbons (PAHs) are a class of organic molecules with importance in several branches of science, including medicine, combustion chemistry, and materials science. The delocalized π-orbital systems in PAHs require highly accurate electronic structure methods to capture strong electron correlation. Treating correlation in PAHs has been challenging because (i) traditional wave function methods for strong correlation have not been applicable since they scale exponentially in the number of strongly correlated orbitals, and (ii) alternative methods such as the density-matrix renormalization group and variational two-electron reduced density matrix (2-RDM) methods have not been applied beyond linear acene chains. In this paper we extend the earlier results from active-space variational 2-RDM theory [Gidofalvi, G.; Mazziotti, D. A. J. Chem. Phys. 2008, 129, 134108] to the more general two-dimensional arrangement of rings--acene sheets--to study the relationship between geometry and electron correlation in PAHs. The acene-sheet calculations, if performed with conventional wave function methods, would require wave function expansions with as many as 1.5 × 10(17) configuration state functions. To measure electron correlation, we employ several RDM-based metrics: (i) natural-orbital occupation numbers, (ii) the 1-RDM von Neumann entropy, (iii) the correlation energy per carbon atom, and (iv) the squared Frobenius norm of the cumulant 2-RDM. The results confirm a trend of increasing polyradical character with increasing molecular size previously observed in linear PAHs and reveal a corresponding trend in two-dimensional (arch-shaped) PAHs. Furthermore, in PAHs of similar size they show significant variations in correlation with geometry. PAHs with the strictly linear geometry (chains) exhibit more electron correlation than PAHs with nonlinear geometries (sheets).     

Software news and updates. Basis-set completeness profiles in two dimensions

A two-electron basis-set completeness profile is proposed by analogy with the one-electron profile introduced by D. P. Chong (Can J Chem 1995, 73, 79). It is defined as Y(alpha, beta) = sigmam sigman (Galpha(1)Gbeta(2)/(1/r12)/ psim(1)psin(2)) (psim(1)psin(2)/r12/Galpha(1)Gp(2)) and motivated by the expression for the basis-set truncation correction that occurs in the framework of explicitly correlated methods (Galpha is a scanning Gaussian-type orbital of exponent alpha and [psim] is the orthonormalized one-electron basis under study). The two-electron basis-set profiles provide a visual assessment of the suitability of basis sets to describe electron-correlation effects. Furthermore, they provide the opportunity to assess the quality of the basis set as a whole--not only of the individual angular momentum subspaces, as is the case for the one-electron basis-set profiles. The two-electron completeness profiles of the cc-pVXZ (X = D, T, Q), aug-cc-pVTZ, cc-pCVTZ, and SVP-auxiliary basis sets for the carbon atom are presented as illustrative examples.     

Explicitly correlated multireference configuration interaction with multiple reference functions: avoided crossings and conical intersections

We develop an explicitly correlated multireference configuration interaction method (MRCI-F12) with multiple reference functions. It can be routinely applied to nearly degenerate molecular electronic structures near conical intersections and avoided crossings, where the reference functions are strongly mixed in the correlated wave function. This work is a generalization of the MRCI-F12 method for electronic ground states, reported earlier by Shiozaki et al. [J. Chem. Phys. 134, 034113 (2011)]. The so-called F12b approximation is used to arrive at computationally efficient formulas. The doubly external part of the wave function is expanded in terms of internally contracted configurations generated from all the reference functions. In addition, we introduce a singles correction to the CASSCF reference energies, which is applicable to multi-state calculations. As examples, we present numerical results for the avoided crossing of LiF, excited states of ozone, and the H(2)?+?OH (A(2)Σ(+)) reaction.     

Combined electronic and nuclear dynamics in a simple model system. II. Spectroscopic transitions

We investigate the correlated electronic and nuclear motion in a model system as proposed by Shin and Metiu [J. Chem. Phys. 102, 9285 (1995)]. The quantum dynamics is studied during laser induced electronic transitions. Here, the influence of nonadiabatic coupling on the absorption spectrum is investigated and the Franck-Condon principle is illustrated in terms of the temporal changes of electronic and nuclear densities. In the case of intense field excitation, multiphoton processes become important, and electronic as well as vibrational wave packets are prepared.     

Linear scaling computation of the Fock matrix. VII. Periodic density functional theory at the Gamma point

Linear scaling quantum chemical methods for density functional theory are extended to the condensed phase at the Gamma point. For the two-electron Coulomb matrix, this is achieved with a tree-code algorithm for fast Coulomb summation [M. Challacombe and E. Schwegler, J. Chem. Phys. 106, 5526 (1997)], together with multipole representation of the crystal field [M. Challacombe, C. White, and M. Head-Gordon, J. Chem. Phys. 107, 10131 (1997)]. A periodic version of the hierarchical cubature algorithm [M. Challacombe, J. Chem. Phys. 113, 10037 (2000)], which builds a telescoping adaptive grid for numerical integration of the exchange-correlation matrix, is shown to be efficient when the problem is posed as integration over the unit cell. Commonalities between the Coulomb and exchange-correlation algorithms are discussed, with an emphasis on achieving linear scaling through the use of modern data structures. With these developments, convergence of the Gamma-point supercell approximation to the k-space integration limit is demonstrated for MgO and NaCl. Linear scaling construction of the Fockian and control of error is demonstrated for RBLYP6-21G* diamond up to 512 atoms.     

Molecular dynamics simulations of shock waves in oriented nitromethane single crystals

The structural relaxation of crystalline nitromethane initially at T = 200 K subjected to moderate (~15 GPa) supported shocks on the (100), (010), and (001) crystal planes has been studied using microcanonical molecular dynamics with the nonreactive Sorescu-Rice-Thompson force field [D. C. Sorescu, B. M. Rice, and D. L. Thompson, J. Phys. Chem. B 104, 8406 (2000)]. The responses to the shocks were determined by monitoring the mass density, the intermolecular, intramolecular, and total temperatures (average kinetic energies), the partitioning of total kinetic energy among Cartesian directions, the radial distribution functions for directions perpendicular to those of shock propagation, the mean-square displacements in directions perpendicular to those of shock propagation, and the time dependence of molecular rotational relaxation as a function of time. The results show that the mechanical response of crystalline nitromethane strongly depends on the orientation of the shock wave. Shocks propagating along [100] and [001] result in translational disordering in some crystal planes but not in others, a phenomenon that we refer to as plane-specific disordering; whereas for [010] the shock-induced stresses are relieved by a complicated structural rearrangement that leads to a paracrystalline structure. The plane-specific translational disordering is more complete by the end of the simulations (~6 ps) for shock propagation along [001] than along [100]. Transient excitation of the intermolecular degrees of freedom occurs in the immediate vicinity of the shock front for all three orientations; the effect is most pronounced for the [010] shock. In all three cases excitation of molecular vibrations occurs more slowly than the intermolecular excitation. The intermolecular and intramolecular temperatures are nearly equal by the end of the simulations, with 400-500 K of net shock heating. Results for two-dimensional mean-square molecular center-of-mass displacements, calculated as a function of time since shock wave passage in planes perpendicular to the direction of shock propagation, show that the molecular translational mobility in the picoseconds following shock wave passage is greatest for [001] and least for the [010] case. In all cases the root-mean-square center-of-mass displacement is small compared to the molecular diameter of nitromethane on the time scale of the simulations. The calculated time scales for the approach to thermal equilibrium are generally consistent with the predictions of a recent theoretical analysis due to Hooper [J. Chem. Phys. 132, 014507 (2010)].     

Thermodynamical and structural properties of imidazolium based ionic liquids from molecular simulation

We have performed molecular dynamics simulations to determine the densities and heat of vaporization as well as structural information for the 1-alkyl-3-methyl-imidazolium based ionic liquids [amim][Cl] and [amim][BF(4)] in the temperature range from 298 to 363 K. In this simulation study, we used an united atom model of Liu et al. [Phys. Chem. Chem. Phys. 8, 1096 (2006)] for the [emim(+)] and [bmim(+)] cations, which we have extended for simulation in [hmim]-ILs and combined with parameters of Canongia Lopes et al. [J. Phys. Chem. B 108, 2038 (2004)] for the [Cl(-)] anion. Our simulation results prove that both the original united atoms approach by Liu et al. and our extension yield reasonable predictions for the ionic liquid with a considerably reduced computational expense than that required for all atoms models. Radial distribution functions and spatial distribution functions where employed to analyze the local structure of this ionic liquid, and in which way it is influenced by the type of the anion, the size of the cation, and the temperature. Our simulations give evidence for the occurrence of tail aggregations in these ionic liquids with increasing length of the side chain and also increasing temperature.     

Hybrid one-electron/many-electron methods for ionized states of molecular clusters

To describe singly-ionized states of molecular clusters we devised an effective Hamiltonian approach that combines (1) accurate monomer ionization potentials from many-electron wave functions with (2) polarization shifts and (3) effective monomer couplings obtained from a simple one-electron approach (the superposition-of-fragment-states (SFS) method [Valeev et al., J. Am. Chem. Soc., 2006, 128, 9882]). The accuracy of the intermolecular coupling parameters evaluated with SFS Hartree-Fock (HF) and Density-Functional-Theory (DFT) variants was evaluated for several weakly-bound dimers and compared against the state-of-the-art equation-of-motion ionization-potential coupled-cluster singles and doubles (EOM-IP-CCSD) data of Krylov and co-workers. The SFS-HF method produces coupling integrals accurate to a few percent, whereas SFS-DFT predictions are substantially worse. A hybrid approach combining SFS-HF couplings and shifts with EOM-IP-CCSD ionization potentials of monomers (denoted as SFS-EOM-IP-CCSD) was applied to ionized states of two conformers of a benzene dimer and ten representative DNA base pairs. The 16 considered SFS-EOM-IP-CCSD ionization potentials of the benzene dimer differed from the reference EOM-IP-CCSD IPs of Krylov and co-workers [Pieniazek et al., J. Chem. Phys. 2007, 127, 044317; Bravaya et al., Phys. Chem. Chem. Phys. 2010, 12, 2261] by less than 0.1 eV on average, and at most by 0.2 eV. For the DNA base pairs the mean absolute (median) deviation of the SFS-EOM-IP-CCSD IPs was 0.27 (0.23) eV; several deviations for non-Koopmans states were as large as 0.9 eV. The SFS-EOM-IP-CCSD method can be readily applied to large molecular clusters with computational effort scaling cubically with the size of the cluster.     

Rovibrational energy transfer in ortho-H2+para-H2 collisions

We present the results of a full-dimensional quantum mechanical study of the rovibrational energy transfer in the collision between ortho-H2 and para-H2 in the energy range of 0.1-1.0 eV. The multiconfiguration time-dependent Hartree algorithm has been used to propagate the wave packets on the global potential energy surface by Boothroyd et al. [J. Chem. Phys. 116, 666 (2002)] and on a modification of this surface where the short range anisotropy is reduced. State-to-state attributes such as probabilities or integral cross sections are obtained using the formalism of Tannor and Weeks [J. Chem. Phys. 98, 3884 (1993)] by Fourier transforming the correlation functions. The effect of initial rotation of the diatoms on the inelastic and de-excitation processes is investigated.     

Franck-Condon simulation of the single-vibronic-level emission spectra of HPCl/DPCl and the chemiluminescence spectrum of HPCl, including anharmonicity

Restricted-spin coupled-cluster single-double plus perturbative triple excitation [RCCSD(T)] potential energy functions (PEFs) were calculated for the X (2)A" and A (2)A' states of HPCl employing the augmented correlation-consistent polarized-valence-quadruple-zeta (aug-cc-pVQZ) basis set. Further geometry optimization calculations were carried out on both electronic states of HPCl at the RCCSD(T) level with all electron and quasirelativistic effective core potential basis sets of better than the aug-cc-pVQZ quality, and also including some core electrons, in order to obtain more reliable geometrical parameters and relative electronic energy of the two states. Anharmonic vibrational wave functions of the two states of HPCl and DPCl, and Franck-Condon (FC) factors of the A (2)A'-X (2)A" transition were computed employing the RCCSD(T)/aug-cc-pVQZ PEFs. Calculated FC factors with allowance for Duschinsky rotation and anharmonicity were used to simulate the single-vibronic-level (SVL) emission spectra of HPCl and DPCl reported by Brandon et al. [J. Chem. Phys. 119, 2037 (2003)] and the chemiluminescence spectrum reported by Bramwell et al. [Chem. Phys. Lett. 331, 483 (2000)]. Comparison between simulated and observed SVL emission spectra gives the experimentally derived equilibrium geometry of the A (2)A' state of HPCl of r(e)(PCl) = 2.0035 +/- 0.0015 A, theta(e) = 116.08 +/- 0.60 degrees, and r(e)(HP) = 1.4063+/-0.0015 A via the iterative Franck-Condon analysis procedure. Comparison between simulated and observed chemiluminescence spectra confirms that the vibrational population distribution of the A (2)A' state of HPCl is non-Boltzmann, as proposed by Baraille et al. [Chem. Phys. 289, 263 (2003)].     

Correlation energy extrapolation by intrinsic scaling. II. The water and the nitrogen molecule

The extrapolation method for determining benchmark quality full configuration-interaction energies described in preceding paper [L. Bytautas and K. Ruedenberg, J. Chem. Phys. 121, 10905 (2004)] is applied to the molecules H(2)O and N(2). As in the neon atom case, discussed in preceding paper [L. Bytautas and K. Ruedenberg, J. Chem. Phys. 121, 10905 (2004)] remarkably accurate scaling relations are found to exist between the correlation energy contributions from various excitation levels of the configuration-interaction approach, considered as functions of the size of the correlating orbital space. The method for extrapolating a sequence of smaller configuration-interaction calculations to the full configuration-interaction energy and for constructing compact accurate configuration-interaction wave functions is also found to be effective for these molecules. The results are compared with accurate ab initio methods, such as many-body perturbation theory, coupled-cluster theory, as well as with variational calculations wherever possible.     

An algorithm for the uniform sampling of iso-energy surfaces and for the calculation of microcanonical averages

In this article an algorithm is proposed to efficiently perform the uniform sampling of an iso-energy surface corresponding to a fixed potential energy U of a molecular system, and for calculating averages of certain quantities over microstates having this energy (microcanonical averages). The developed sampling technique is based upon the combination of a recently proposed method for performing constant potential energy molecular dynamics simulations [Rapallo, A. J Chem Phys 2004, 121, 4033] with well-established thermostatting techniques used in the framework of standard molecular dynamics simulations, such as the Andersen thermostat, and the Nose-Hoover chain thermostat. The proposed strategy leads to very accurate and drift-free potential energy conservation during the whole sampling process, and, very important, specially when dealing with high-dimensional or complicated potential functions, it does not require the calculation of the potential energy function hessian. The technique proved to be very reliable for sampling both low- and high-dimensional surfaces.     

Linear expansions of correlated functions: Variational Monte Carlo case study

The relative performance of trial wave functions expressed as linear combination of correlated exponentials has been tested on a variety of systems. The results are compared against other correlated functions commonly used in the literature to assess the capabilities of the proposed ansatz. A possible departure from the simple exponential functional form used in previous works is discussed, along with its advantages and drawbacks. We also discuss how to implement an efficient optimization procedure for this correlated basis set. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 74: 23–33, 1999     

Correlated wave-function theory for many-center many-electron problems

The correlated electronic wave-function theory developed by S. Obara and K. Hirao [Bull. Chem. Soc. Jpn. 66 , 3300 (1993)], as applied to two-electron molecular systems, is generalized to many-center many-electron problems. The exact formulas for effective Hamiltonian operators are given. The rules for the calculation of matrix elements with three-electron operators over Slater determinants are formulated. From the energy-minimum principle, the system of master equations is derived for variational coefficients of a trial wave function for the molecules with closed electronic shells. © 1998 John Wiley & Sons, Inc. Int J Quant Chem 69: 639–648, 1998