DNA-binding studies of a new Cu(II) complex containing reverse transcriptase inhibitor and anti-HIV drug zalcitabine

Abstract

In this study, a new copper(II) complex with zalcitabine (ddC) drug was synthesized and characterized by Fourier-transform infrared spectroscopy (FT-IR), ultraviolet–visible spectroscopy (UV–vis), mass spectroscopy, thermal gravimetric analysis and density functional theory. Then, its effect on calf-thymus DNA (CT-DNA) was investigated using absorption and fluorescence spectroscopy and viscometry technique. On the basis of FT-IR and computational studies, zalcitabine chelates with copper using its C(2)=O and N(3) group in the [Cu(zalcitabine)Cl₂] ([CuCl₂(ddC)]) complex. On the basis of the electrospray ionization mass spectroscopy of the Cu–ddC complex, monomeric copper complex [C₉H₁₃N₃O₃CuCl₂] was formed. The results of fluorescence studies indicated increasing to around 2.5 times in emission intensity of fluorescence signal of the complex. The enhancement of emission intensity and also the positive ΔH and positive ΔS values suggested that the hydrophobic interaction plays a major role in the binding with overall binding constant of 1(±0.25)×10⁵ M^?1. The ΔG value implied that the interaction occurred between DNA and the complex formation was spontaneous. Finally, changes in the relative viscosity showed that groove binding must be the predominant form of binding. Evidences are provided that [Cu(ddC)Cl₂] could interact with DNA via minor groove interaction mode.     

Prevention of iron- and copper-mediated DNA damage by catecholamine and amino acid neurotransmitters, L-DOPA, and curcumin: metal binding as a general antioxidant mechanism

Concentrations of labile iron and copper are elevated in patients with neurological disorders, causing interest in metal-neurotransmitter interactions. Catecholamine (dopamine, epinephrine, and norepinephrine) and amino acid (glycine, glutamate, and 4-aminobutyrate) neurotransmitters are antioxidants also known to bind metal ions. To investigate the role of metal binding as an antioxidant mechanism for these neurotransmitters, L-dihydroxyphenylalanine (L-DOPA), and curcumin, their abilities to prevent iron- and copper-mediated DNA damage were quantified, cyclic voltammetry was used to determine the relationship between their redox potentials and DNA damage prevention, and UV-vis studies were conducted to determine iron and copper binding as well as iron oxidation rates. In contrast to amino acid neurotransmitters, catecholamine neurotransmitters, L-DOPA, and curcumin prevent significant iron-mediated DNA damage (IC(50) values of 3.2 to 18 μM) and are electrochemically active. However, glycine and glutamate are more effective at preventing copper-mediated DNA damage (IC(50) values of 35 and 12.9 μM, respectively) than L-DOPA, the only catecholamine to prevent this damage (IC(50) = 73 μM). This metal-mediated DNA damage prevention is directly related to the metal-binding behaviour of these compounds. When bound to iron or copper, the catecholamines, amino acids, and curcumin significantly shift iron oxidation potentials and stabilize Fe(3+) over Fe(2+) and Cu(2+) over Cu(+), a factor that may prevent metal redox cycling in vivo. These results highlight the disparate antioxidant activities of neurotransmitters, drugs, and supplements and highlight the importance of considering metal binding when identifying antioxidants to treat and prevent neurodegenerative disorders.     

姜黄素与DNA相互作用的电化学性质

采用循环伏安法和差示脉冲伏安法,研究了姜黄素在DNA修饰玻碳电极上与DNA的相互作用.结果表明,姜黄素与DNA之间发生嵌插作用,形成了两种化合物DNA-2curcumin和DNA-curcumin,两者的表观结合常数分别为2.34×10^5L/mol和1.48 L/mol.     

Mechanistic investigation on binding interaction of bioactive imidazole with protein bovine serum albumin--a biophysical study

The interaction between bioactive imidazole derivative (PPP) and bovine serum albumin (BSA) was investigated using fluorescence and UV-vis spectral studies. The experimental results showed that the fluorescence quenching of BSA by imidazole derivative was the result of the formation of BSA-PPP complex and the effective quenching constants (K(SV)) were 2.66×10(4), 2.56×10(4), and 2.10×10(4) at 301, 310 and 318 K, respectively. Static quenching and non-radiative energy transfer were confirmed to the result in the fluorescence quenching. The binding site number n, apparent binding constant K(A) and corresponding thermodynamic parameters (ΔG, ΔH and ΔS) were measured at different temperatures. The process of binding of PPP molecule on BSA was a spontaneous molecular interaction procedure in which entropy increased and Gibbs free energy decreased.     

A novel bioactive tyramine derived Schiff base and its transition metal complexes as selective DNA binding agents

A novel tyramine derived Schiff base, 3-4-dimethoxybenzylidene-4-aminoantipyrinyl-4-aminoethylphenol(L) and a series of its transition metal complexes of the type, ML2Cl2 where, M=Cu(II), Ni(II), Co(II) and Zn(II) have been designed and synthesized. Their structural features and other properties were deduced from the elemental analysis, magnetic susceptibility and molar conductivity as well as from mass, IR, UV-vis, 1H NMR and EPR spectral studies. The binding properties of these complexes with calf thymus DNA (CT-DNA) were investigated using electronic absorption spectroscopy, viscosity measurement, cyclic voltammetry and molecular docking analysis. The results reveal that the metal(II) complexes interact with DNA through minor groove binding. The interaction has also been investigated by gel electrophoresis. Interestingly, it was found that all the complexes could cleave the circular plasmid pUC19 super coiled (SC) DNA efficiently in the presence of AH2 (ascorbic acid). The complexes showed enhanced antifungal and antibacterial activities compared to the free ligand.     

2,2'-联吡啶In(Ⅲ)配合物与DNA作用的电化学研究

应用循环伏安法、微分脉冲伏安法和交流阻抗法研究了配合物In(bpy)Cl3.H2O与DNA在Tris-HCl缓冲溶液(pH=7.2)中的相互作用.结果表明:配合物中心In(Ⅲ)离子的循环伏安曲线上呈现一对准可逆的氧化还原波,DNA与配合物作用后,配位中心离子的氧化还原峰电流明显降低,扩散系数减小,电化学反应阻抗增大,式量电位负移,表明该配合物与DNA的作用方式为静电结合.     

四氮大环-金属配合物与DNA作用的电化学及谱学研究

Mononuclear copper（Ⅱ）, nickel（Ⅱ） and cobalt（Ⅲ） tetracoordinate macrocyclic complexes were synthesized and spectroscopically characterized. The crystal structure of the three compounds were determined by X-ray crystallography. The electrochemical experimental results indicate that the three complexes could interact with DNA mainly by electrostatic interaction. The interaction of tetracoordinate macrocyclic cobalt（Ⅲ） complex with DNA was studied by cyclic voltammetry and UV-vis spectroscopy. The experimental results reveal that tetracoordinate macrocyc- lic cobalt（Ⅲ） complex could interact with DNA by electrostatic interaction to form a 1 ： 1 DNA association complex with a binding constant of 7.50 ×10^3 L·mol^-1.     

The experimental and theoretical QM/MM study of interaction of chloridazon herbicide with ds-DNA

We report a multispectroscopic, voltammetric and theoretical hybrid of QM/MM study of the interaction between double-stranded DNA containing both adenine-thymine and guanine-cytosine alternating sequences and chloridazon (CHL) herbicide. The electrochemical behavior of CHL was studied by cyclic voltammetry on HMDE, and the interaction of ds-DNA with CHL was investigated by both cathodic differential pulse voltammetry (CDPV) at a hanging mercury drop electrode (HMDE) and anodic differential pulse voltammetry (ADPV) at a glassy carbon electrode (GCE). The constant bonding of CHL-DNA complex that was obtained by UV/vis, CDPV and ADPV was 2.1×10(4), 5.1×10(4) and 2.6×10(4), respectively. The competition fluorescence studies revealed that the CHL quenches the fluorescence of DNA-ethidium bromide complex significantly and the apparent Stern-Volmer quenching constant has been estimated to be 1.71×10(4). Thermal denaturation study of DNA with CHL revealed the ΔTm of 8.0±0.2°C. Thermodynamic parameters, i.e., enthalpy (ΔH), entropy (ΔS°), and Gibbs free energy (ΔG) were 98.45 kJ mol(-1), 406.3 J mol(-1) and -22.627 kJ mol(-1), respectively. The ONIOM, based on the hybridization of QM/MM (DFT, 6.31++G(d,p)/UFF) methodology, was also performed using Gaussian 2003 package. The results revealed that the interaction is base sequence dependent, and the CHL has more interaction with ds-DNA via the GC base sequence. The results revealed that CHL may have an interaction with ds-DNA via the intercalation mode.     

双核钒席夫碱配合物[VO(μ2-O)(o-Vanillin-en)]2的合成、结构及与DNA相互作用

在甲醇体系中乙酰丙酮氧钒与邻香草醛缩牛磺酸钾席夫碱在乙二胺存在下反应得到一个双核钒配合物。通过红外光谱和X-射线单晶衍射对其进行了表征。晶体结构表明该化合物的晶体属于三斜晶系，P1空间群，晶胞参数为a=0.898 67(19)nm，b=1.159 3(3) nm，c=1.200 0(3) nm，α=106.872(3)°，β=102.718(4)°，γ=94.905(3)°，Z=2。通过紫外吸收光谱法和循环伏安法研究了钒配合物与小牛胸腺DNA间的相互作用。紫外吸收光谱法得到配合物与DNA的结合常数为1.77×10⁴ dm³·mol^-1。     

Spectroscopic and spectrofluorimetric studies on the interaction of irbesartan with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone and iodine

Raman, UV-vis, 1H NMR, FT-IR, mass and fluorescence spectral techniques were employed to investigate the mechanism of interaction of irbesartan (IRB) drug with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) and iodine. Interaction of IRB with iodine yields triiodide ion and its formation was confirmed by electronic and Raman spectra. The peaks appeared in Raman spectrum of the isolated product at 143, 113 and 76 cm(-1) are assigned to νas(I-I), νs(I-I) and δ(I3-) respectively, confirmed the presence of I3- ion. The interaction of DDQ with irbesartan was found to proceed through the formation of outer complex and its conversion to the CT complex. Formation constant (K), molar extinction coefficient (?) and thermodynamic properties ΔH#, ΔS# and ΔG# were determined and discussed. Fluorescence quenching studies indicated that the interaction between the IRB and the acceptors are spontaneous and the IRB-DDQ interaction is found to be stronger than that the other system. Solvent variation studies indicated that the binding constant increased with an increase in polarity of the medium.     

Synthesis,characterization and in vitro DNA binding studies of a new copper(II) complex containing antioxidant ferulic acid

A mononuclear Cu(II) complex, [Cu(FA)₂(NO₃)₂], in which FA is ferulic acid ((E)-3-(4-hydroxy-3-methoxy-phenyl)prop-2-enoic acid), was synthesized and characterized by spectroscopic methods. The main structures of the ligand and its complexes with Cu²⁺ were optimized by QM calculations. The calculations on the structures of the [Cu(FA)₂(NO₃)₂] complexes forms and the intercalating with DNA profile were undertaken by UHF/PM6 and MMFF94 methods, respectively. In vitro studies (UV-vis spectroscopy, emission titration, circular dichroism techniques, and viscometry) under physiological conditions (Tris-HCl buffer solutions, pH 7.4) showed that the complex interacts with calf-thymus DNA (ct-DNA) via an intercalative binding mode. The thermodynamic parameters, enthalpy change (ΔH), and entropy change (ΔS) showed that the acting forces between Cu(II) complex and ct-DNA mainly included van der Waals interactions and hydrogen bonds. Methylene blue (MB) displacement studies revealed that Cu(II) complex can substitute MB probe in the MB-DNA complex which was indicative of intercalative binding. The theoretical data confirm the experimental results with respect to the mechanism of binding.     

DNA binding studies of new valine derived chiral complexes of tin(IV) and zirconium(IV)

Valine derived chiral complexes of SnCl4 (1) and ZrCl4 (2) were designed as potent antitumor agents. These complexes were characterized by elemental analysis, IR, 1H NMR, 119Sn NMR and ESI mass spectroscopy. In vitro binding studies of complexes 1 and 2 under physiological conditions at room temperature with CT-DNA were carried out employing UV-vis absorption titration, fluorescence studies and viscosity measurements. The extent of binding was quantified by Kb values of complexes 1 and 2 which were found to be 1.97×10(4) and 1.17×10(3) M(-1), respectively, suggesting that complex 1 has significantly greater DNA binding propensity in contrast to the complex 2. The mode of action at the molecular level was ascertained by the interaction of complex 1 with 5'GMP and 5'TMP which revealed that complex 1 binds via electrostatic mode with the oxygen of the negatively charged surface phosphate group of the DNA helix. The supercoiled pBR322 plasmid DNA cleavage activity of complex 1 was ascertained by gel electrophoresis assay.     

DNA interaction with Al-N,N'-bis(salicylidene)2,2'-phenylendiamine complex

The Al(III) complex, [Al(salophen)2H2O]NO3, was synthesized and characterized by spectroscopic (NMR and FT-IR) techniques. Then the binding of Schiff base complex of [Al(salophen)]+ type, where salophen denotes N,N'-bis(salicylidene) 2,2-phenylendiamine to calf thymus DNA, has been investigated by spectrophotometric, circular dichroism, spectrofluorometric, melting temperature and viscosimetric techniques. This Al(III) complex showed absorption hyperchromism in the range of 310-390 nm, increase in melting temperature, some structural changes in specific viscosity, when bound to calf thymus DNA. The binding constant has been determined using absorption measurement and found to be 1.82 x 10(3)M(-1) and 1.31 x 10(3)M(-1) in HEPES and Tris-HCl buffers, respectively. Also the fluorescence spectral characteristics and interaction of Al-salophen complex with DNA have been studied. Al-salophen bound to DNA showed a marked increase in the fluorescence intensity along with a bathochromic shift (5 nm). The intersection point of the binding isotherm indicated a binding site size of 12 bp per bound complex molecule in both HEPES and Tris-HCl buffers. The experimental results showed that the Al-salophen complex bound to DNA by non-intercalative mode and major groove binding was the preferred mode of interaction.     

Synthesis,DNA-binding and photocleavage studies of cobalt(III) mixed-ligand complexes

Two novel complex ions [Co(bpy)₂IP]³⁺ and [Co(bpy)₂PIP]³⁺, have been prepared and characterized by EA, mass spectra, u.v.–vis., and cyclic voltammetry. The binding behavior of both complexes to calf thymus DNA (CT-DNA) has been investigated by spectroscopic methods, cyclic voltammetry, and viscosity measurements. The results suggest that both complexes bind to DNA by intercalation. Both promote cleavage of plasmid pBR 322 DNA from the supercoiled Form I to the open circular Form II upon irradiation. Mechanisms for photocleavage are proposed.     

Electrochemical recognition of cations by bis(pyrrolo)tetrathiafulvalene macrocycles

[structure: see text] Tetrathiafulvalene redox-responsive ligands devoid of cis/trans isomerism containing the electroactive bis(pyrrolo[3,4-d])tetrathiafulvalene moiety and polyether subunits have been synthesized. One ligand exhibits high binding affinities for Pb2+ and Ba2+ cations as shown by independent methods (1H NMR, UV-vis spectroscopy, and cyclic voltammetry). The ability of this receptor to electrochemically recognize Pb2+ and Ba2+ is shown by cyclic voltammetry.     

Studies on the Interaction of Cobalt Mixed-Ligand Coordination Compound Containing Tetrapyrido [3,2-a: 2' 3'-c: 3″ 2″ h: 2'″, 3'″-j] phenazine with DNA

A new monometallic complex [Co(phen)2tpphz]3+ (where tpphz is tetrapyrido [3,2-a: 2',3'-c: 3″,2″-h: 2'″,3'″-j] phenazine) was synthesized by the reaction of 5,6-diamino-1,10-phenanthroline with [Co(phen)2(phendione)]3+. It was characterized by elemental analysis, molar conductivity, IR, 1H NMR, ultraviolet and fluorescence spectroscopy. The interaction of the complex with DNA was also investigated. The complex shows the absorption hypochromicity, fluorescence enhancement, the specific viscosity increased when bound to calf thymus DNA. The cyclic voltammetry (CV) measurement showed a change in peak current with the addition of DNA. All the results provide the support for the intercalative binding mode of the mononuclear complex.     

Step-controlled synthesis of platinum(II) acetylide frameworks from conjugated polyaromatic modules

A simple synthetic route for the efficient preparation of mono- and dinuclear platinum(II) derivatives containing σ-bonded ethynyl aryl groups is described. A dinuclear complex pointing its two Pt-Cl dipoles in opposite directions is prepared either by complexation of a back-to-back terpyridine ligand with platinum salts or by cross-coupling [(4′-ethynylterpyridine)PtCl] with dibromodidodecylphenyl derivatives. FT-IR, UV-vis absorption and cyclic voltammetry are used as spectroscopic tools to characterize these new complexes.     

姜黄素的电化学性质及其测定

在0.1 mol/L磷酸盐缓冲液(pH 3.0)中,姜黄素于玻碳电极上存在可逆的单电子转移过程,据此,本文建立了以差示脉冲伏安扫描法检测姜黄素含量的新方法.在+0.8V(vs.SCE)电位下,含姜黄素的电解液(试样)于玻碳电极上经过富集,可得一灵敏的还原峰,峰电位Ep为+0.386V.峰电流Ip与姜黄素浓度(1.0×10-8~2.5×10-7mol/L范围内)成线性关系,最低检出限为4.0×10-9mol/L.本法操作简单、快速、灵敏、准确,可用于药物中姜黄素含量直接测定.     

Conjugation of organic-metallic hybrid polymers and calf-thymus DNA

Strong electrostatic interaction between metallo-supramolecular polymers and DNA was confirmed by UV-vis and CD spectral measurements during titration, and cyclic voltammetry. The stable conjugation structure based on groove binding was revealed by using QM/MM computational methodology and supported by AFM.     

含咔唑基团的新颖Re(Ⅰ)配合物的合成、表征和光电性质的研究

合成了一种含咔唑基团的新颖配合物Re(CO)_3CLL[L=1-乙基-2-(N-乙基－咔唑 并-4-)咪唑并[4.5-f]1,10-邻菲咯啉],通过元素分析、红外光谱、紫外光谱、~1H NMR、荧光光谱和循环伏安学对其进行了表征，制备了基于真空沉积膜的双层电致 发光器件：ITO/TPD (30 nm)/Re(Co)_3CLL (10 nm)/Mg_(0.9)Ag_(0.1) (110 nm) /Ag(60 nm)该器件启动电压为5V，在电压为9V时达到最大亮度113cd/m~2，发出桔 红色的光。