Effect of load on structural and frictional properties of alkanethiol self-assembled monolayers on gold: some odd-even effects

We have conducted molecular dynamics simulations to study the frictional properties of alkanethiols CH(3)(CH(2))(n-1)SH (Cn, 12 ≤ n ≤ 15) self-assembled monolayers (SAMs) on Au(111) surfaces, under various loading and shearing conditions. For the examined alkanethiols, we found some evidence of the friction coefficient being dependent on the number of carbon atoms in the molecule being odd or even. Alkanethiols with n = odd show consistently higher friction coefficients than those with n = even. Such odd-even effect seems to be independent of the sliding velocity. However, the effect is significant only at lower loads (<700 MPa). The structural origin of this odd-even effect has been discussed. The effect of loading on the structure is also studied. For dodecanethiol (n = 12) we find the film responds to increased loading initially by increasing the tilt and then by deformation of individual molecules. SAM-Au contacts under shear show periodic storage and release of energy and a clear stick-slip pattern in the shear stress, film thickness, and the tilt and tilt orientation angles.     

Investigations on the field-induced switching behaviour in an antiferroelectric liquid crystal

The switching currents and field-induced apparent tilt angles in an antiferroelectric liquid crystal, (R)-MHPOBC, were measured. The structural differences among different smectic C* subphases may sensitively reflect the field or temperature dependence of the apparent tilt angle. In a thin cell, the apparent tilt angle was found to change in two steps as a function of field strength in the SmC*alpha and SmC* phases: a steep increase at lower fields and a small linear increase at higher fields. The steep increase in apparent tilt angle is divided into two parts via a plateau in the ferrielectric SmC*gamma phase. Stepwise change with a plateau is also seen in the relation of apparent tilt angle versus temperature under various electric fields. Moreover, the apparent tilt angle in the vicinity of the plateau is almost temperature- and field-independent, implying a preferred orientation of the molecules in the ferrielectric state. The influence of the cell thickness on the structural changes was also investigated.     

Molecular orientation in helical and all-trans oligo(ethylene glycol)-terminated assemblies on gold: results of ab initio modeling

The structural properties of self-assembled monolayers (SAMs) of oligo(ethylene glycol) (OEG)-terminated and amide-containing alkanethiols (HS(CH(2))(15)CONH(CH(2)CH(2)O)(6)H and related molecules with shorter alkyl or OEG portions) on gold are addressed. Optimized geometry of the molecular constituents, characteristic vibration frequencies, and transition dipole moments are obtained using density-functional theory methods with gradient corrections. These data are used to simulate IR reflection-absorption (RA) spectra associated with different OEG conformations. It is shown that the positions and relative intensities of all characteristic peaks in the fingerprint region are accurately reproduced by the model spectra within a narrow range of the tilt and rotation angles of the alkyl plane, which turns out to be nearly the same for the helical and all-trans OEG conformations. In contrast, the tilt of the OEG axis changes considerably under conformational transition from helical to all-trans OEG. By means of ab initio modeling, we also clarify other details of the molecular structure and orientation, including lateral hydrogen bonding, the latter of which is readily possessed by the SAMs in focus. These results are crucial for understanding phase and folding characteristics of OEG SAMs and other complex molecular assemblies. They are also expected to contribute to an improved understanding of the interaction with water, ions, and ultimately biological macromolecules.     

A simple molecular model for the interpretation of some properties of smectic C and A phases

We present a simple geometrical model in which the molecular shape is approximated by a small number of parameters for the dumbbell-like middle group and cylinder-like alkyl end chains. The pair potentials of nearest neighbours are approximated by the sum of anisotropic repulsive terms due to the contact of the different parts of the molecules and attraction due to dispersion forces between different parts of the molecules and attraction due to dispersion forces between different parts of the molecules. Since the number of nearest neighbours at the smectic C/A phase transition is unchanged, the resulting pair potentials are able to describe well the cooperative behaviour of the molecules in the non-ordered layers of the smectic C and A phases. The dependence of the tilt angle on the alkyl chain length and on the temperature and other thermodynamic and structural properties can be interpreted qualitatively very well.     

Odd-even variations in the wettability of n-alkanethiolate monolayers on gold by water and hexadecane: a molecular dynamics simulation study

Molecular dynamics (MD) simulations were performed to investigate odd-even chain length dependencies in the wetting properties of self-assembled monolayers (SAMs) of n-alkanethiols [CH3(CH2)n-1SH] on gold by water and hexadecane. Experimentally, the contact angle of hexadecane on the SAMs depends on whether n is odd or even, while contact angles for water show no odd-even dependence. Our MD simulations of this system included a microscopic droplet of either 256 water molecules or 60 hexadecane molecules localized on an n-alkanethiolate SAM on gold with either an even or odd chain length. Contact angles calculated for these nanoscopic droplets were consistent with experimentally observed macroscopic trends in wettability, namely, that hexadecane is sensitive to structural differences between odd- and even-chained SAMs while water is not. Structural properties for the SAMs (including features such as chain tilt, chain twist, and terminal methyl group tilt) were calculated during the MD simulations and used to generate IR spectra of these films that compared favorably with experimental spectra. MD simulations of SAMs in contact with slabs of water and hexadecane revealed that the effects of these solvents on the structure of the SAM was restricted to the chain terminus and had no effect on the inner structure of the SAM. The density profiles for water and hexadecane on the SAMs were different in that water displayed a significant depletion in its density at the liquid/SAM interface from its bulk value, while no such depletion occurred for hexadecane. This difference in contact may explain the lack of an odd-even variation in the wetting characteristics of water on these surfaces, because the water molecules are positioned further away from the surface and, therefore, are not sensitive to the structural differences in the average orientations for the terminal methyl groups in odd- and even-chained SAMs. In contrast, the differences in the wetting properties of hexadecane on the odd- and even-chained SAMs may reflect the closer proximity of these molecules to the SAM surface and a resulting greater sensitivity to the differences in the terminal methyl group orientations in the SAMs. SAM-solvent interaction energies were calculated during the MD simulations, yielding interaction energies that differed on the even- and odd-chained surfaces by approximately 10% for hexadecane and negligibly for water, in accord with estimates using experimental wetting results.     

Structural, energetic, and vibrational properties of NO(x) adsorption on Ag(n), n = 1-8

The density functional theory is used to explore structural, electronic, and vibrational properties of NO, NO(2), and NO(3) adsorption on small silver clusters, Ag(n), with n =1-8. Generally, NO adsorbs in a top configuration, whereas NO(2) and NO(3) are adsorbed in bridge configuration. NO2 and NO3 introduce pronounced structural relaxations in the clusters. In particular, the transition size from planar to three-dimensional structures is modified. For each cluster size, the adsorption energies follow the trend E(a) (NO) < E(a) (NO(2)) < E(a) (NO(3)). The adsorption energies show a marked odd/even alternation with a stronger bonding to odd clusters. Analysis of the electronic structure reveals an ionic bond mechanism for NO(2) and NO(3). Odd/even effects are also present in vibrational properties of the adsorbed radicals. With respect to the gas phase, the largest shifts are calculated for adsorption on odd clusters. Possible implications of the results for Ag/Al(2)O(3) HC-SCR catalysts are discussed.     

Molecular dynamic simulations of self-assembled alkylthiolate monolayers on an Au(III) surface

Molecular dynamics simulations incorporating explicit gold atoms in the simulations have been carried out for alkanethiol self-assembled monolayers chemisorbed on the Au(III) surface. The structural properties of the monolayer are evaluated for two force fields: one in which the Au--S--C bond is fixed (FF I), and the other in which it is flexible (FF II). The influence of these force fields on the structural properties of HS(CH2)14CH3 on the structured Au surface is compared at different temperatures. FF I yields greater tilt angles and a smaller film thickness when compared with FF II. Both of the force fields predict that the tilt angles do not follow a monotonic decrease with temperature but show minima around 200 K. Simulations carried out at different chain lengths at 300 K reveal that FF II predicts a greater film thickness than FF I; however, the difference is within 1 A.     

黑皂膜中染料分子的共振Raman光谱及其分子取向

本文研究了BSF中染料BY和MO分子的取向问题, 建立了三点式数据采集方法,测得各种入射角θ下BSF中BY和MO分子的-N=N-对称伸缩振动谱带的Raman偏振比R~1和R~2, 分别用单轴唯一角取向模型和取向分布模型, 讨论偏振比R~1和R~2与入射角θ的关系。单轴唯一角取向模型处理上述偏振数据的结果表明, BY以较大的倾角(约80°)斜躺在BSF的膜壁上; 凝胶相的BSF中, MO取向角约为70°, 随温度升高,BSF转变为液晶相对, MO的取向角减小到65°。用取向分布模型处理, 得到染料分子的取向分布图象, BY和MO在BSF中均以90°取向几率为最大, 但其它各方向亦有一定的取向几率, BSF的相变导致MO分子的取向分布图象由较为集中型转变为更加弥散型。     

Effect of hydroxyl group position and system parameters on the features of hydroxystearic Acid monolayers

The characteristic features of hydroxystearic acid monolayers OH-substituted in the mid position of the alkyl chain deviate considerably from those of the usual nonsubstituted stearic acid. The phase behavior, domain morphology, and two-dimensional lattice structure of 9-, 11-, and 12-hydroxystearic acids are studied, using pi-A isotherms, Brewster angle microscopy (BAM), and grazing incidence X-ray diffraction (GIXD), to obtain detailed information on the effect of the exact position of the OH-substitution. The pi-A isotherms of all three hydroxyoctadecanoic acids have an extended flat plateau region, the extension of which only slightly decreases with the increase of temperature. At the same temperature, the extension of the plateau region increases and the plateau pressure decreases from 9-hydroxyoctadecanoic acid to 12-hydroxyoctadecanoic acid. The absolute -DeltaH and -DeltaS values for the phase transition increase slightly from 9-hydroxyoctadecanoic acid to 12- hydroxyoctadecanoic acid and indicate differences in the ordering of the condensed phase under consideration of the special reorientation mechanism of these bipolar amphiphiles at the fluid/condensed phase transition. The morphology of the condensed phase domains formed in the fluid/condensed coexistence region is specific for the position of the OH-substitution of the alkyl chain, just as the lattice structures of the condensed monolayer phase. 11-hydroxyoctadecanoic acid monolayers form centered rectangular lattices with the chain tilt toward the NNN (next nearest neighbor) direction, and 12-hydroxyoctadecanoic acid monolayers have an oblique lattice over the entire pressure range. A special feature of 9-hydroxystearic acid monolayers is the phase transition between two condensed phases observed in the pi-A isotherm of 5 degrees C at approximately 18 mN/m, where the centered rectangular lattice shows a NNN/NN transition. The morphology of the condensed phase domains formed in the fluid/condensed coexistence region, just as the lattice structures of the condensed monolayer phase, reveal the high specifity of the monolayer feature of the bipolar hydroxystearic acids OH-substituted in the mid position.     

磁性高分子链的磁性质和构象性质的Monte Carlo模拟

采用退火 (Annealing)MonteCarlo方法 ,从高温到低温顺序模拟了简立方格点上考虑最近邻Ising相互作用的磁性高分子链在不同温度的磁性质和构象性质 .磁性高分子链在低温下存在自发磁矩 ,无限长链的临界温度Tc=1 77± 0 0 5J kB.在临界温度附近 ,高分子链经历了从伸展的无规线团到紧缩球体的塌缩相变 .对链的尺寸、形状、近邻数及能量的分析表明 ,高分子链的构象性质从温度Tc=1 77开始发生较明显的变化 ,这表明高分子Ising链的相变是Ising相互作用和链节运动协同作用的结果 .     

Synthesis and surface properties of new ureas and amides at different interfaces

The influence of the urea and amide group in the alkyl chain of methyl nonadecanoate on the surface properties is investigated and compared. For that purpose, the ureas CH3O2C-(CH2)m-NHCONH-(CH2)n-CH3 (n + m = 14) [1 (m = 2), 3 (m = 3), and 5 (m = 4)] and the amides CH3O2C-(CH2)m-NHCO-(CH2)n-CH3 (n + m = 15) [2(m = 2), 4 (m = 3), and 6 (m = 4)] were synthesized. The pi/A isotherms of the ureas show up to the attainable temperature of 313 K no LE phase, which indicates a very stable LC phase. The amides exhibit a two phase plateau region, with the exception of 2. The different behavior is connected with the hydrogen bond energies, which are stronger with the ureas in the LC than in the LE phase, whereas those of the amides have a similar strength in both phases. The effect of hydrogen bonds in self-assembled molecules of N,N'-dialkylurea CH3-(CH2)m-NHCONH-(CH2)n-CH3 (m + n = 14) [7 (n = 2)] was visualized by STM at the octylbenzene/graphite interface. Compound 7 forms a lamella structure with a periodicity of one molecule length. The tilt angle of 86 degrees +/- 2 degrees to the edge of the lamella points to a nearly orthogonal arrangement of the molecules. It indicates two equivalent bonds between the aza-hydrogens and the carbonyl oxygen. A similar arrangement is proposed for the LC phase of the ureas at the air/water interface.     

DFT studies of the conformational/structural dependencies of geminal 1H,1H scalar coupling 2J(H,H') in substituted methanes

A study is presented of the structural dependencies for scalar, interproton J-coupling across two bonds in a series of substituted methanes. The coupled perturbed, density functional theory method with a B3PW91 functional and aug-cc-pVTZ-J basis sets is used to examine coupling between geminal protons (2)J(H,H') in methane and a series of substituted compounds CH(3)X (X = CH3, CH(2)CH(3), CH=CH2, CH=O, and NH2) as functions of the dihedral angle phi measured about the C1-X2 bonds. All four contributions are obtained but all conformational effects are dominated by the Fermi contact term. Simple linear combination of atomic orbitals (LCAO)-molecular orbital (MO) sum-over-states methods are used to examine the relationships of the coupling constants with dihedral angles as well as internal H-C-H and H-C1-X2 angles. This study explores some novel aspects of geminal H-H coupling including an analysis of the asymmetry in the conformational dependencies arising from non-next-nearest neighbor interactions. For each of the substituted methanes, explicit trigonometric/exponential expressions are given and these accurately reproduce the (2)J(H,H') structural dependencies with standard deviations usually less than 0.03 Hz. The molecular structures for representative bicyclic molecules were fully optimized, and DFT results for (2)J(H,H') reproduce all the trends in the experimental data. A discussion is given on the applicability of the equations for H--H coupling in the substituted methanes to coupling in the bicyclic molecules.     

Auto-orientation of G-wire DNA on mica

Scanning probe microscopy was used to examine the orientation of Tet1.5 quadruplex DNA polymers, a.k.a. “G-wires”, after adsorption onto freshly cleaved Phyllosilicate micas. The G-wires appear to have a preferential orientation at 60° intervals after thorough rinsing and slow drying. The angles the G-wires made with the fast scan direction of the SPM probe were measured and the frequency-angle information was quantitatively characterized by an empirical correlation coefficient. Careful measurements indicate the Tet1.5 G-wires orient along the b lattice vector of mica, the next nearest neighbor potassium vacancy. A model is proposed to explain this auto-orientation affect due to alignment of the G-wires’ phosphate backbone through magnesium tether cations. Pairs of adjacent, parallel phosphate groups of the G-wires (0.95 nm apart) appear to align with the next nearest neighbor potassium vacancy sites of mica (0.90 nm apart). This behavior is not observed in solution. The potential for using the auto-orientation phenomena in the development of high-density biomolecular nano-electronic devices is explored.     

Dimeric liquid crystals with 5‐(4‐alkoxybenzoyloxy)tropone or 4‐(4‐alkoxybenzoyloxy)phenyl cores: evaluation of the tilt angles of the cores,spacers, and side chains

Two types of symmetric dimers with 5‐(4‐alkoxybenzoyloxy)tropone cores or with 4‐(4‐alkoxybenzoyloxy)phenyl cores were synthesized to evaluate the effect of the core structure and the length of the spacer on the mesomorphic properties. The former had smectic C phases whereas the latter had smectic C and F phases. Both types of dimer showed a remarkable odd–even effect on varying the spacer on the mesomorphic properties. Comparison of the thermal stability between them demonstrated that benzenoid twins are more stable than troponoid ones. The layer spacings of the smectic C phases were measured to determine the tilt angles of the core part, the spacer, and the side chains on changing the length of the spacer and the side chains. Troponoid dimers had a larger tilt angle of the core part of the smectic C phase than benzenoid twins, which lowered the thermal stability of the troponoid. Entropy changes of the smectic C phase to the isotropic liquid showed a contrast between troponoids and benzenoids. The former had smaller values and odd–even effects than the latter, which indicated that the former troponoids had a limited number of conformers in mesophases.     

Quenching of IR luminescence of erbium, neodymium, and ytterbium beta-diketonate complexes by ligand C-H and C-D bonds

The effect of CH and CD quenching on the luminescence lifetime of Er(3+) Nd(3+) and Yb(3+) in the Cs[Ln(HFA)(4)] system has been quantified, and we have shown that for Er(3+) ions the quenching is dominated by the nearest neighbor CH oscillators, whereas for Nd(3+) ions the roles of more distant CH oscillators and nearest neighbor CD oscillators are important.     

Synthesis, characterization and phase transitions of the inorganic-organic layered perovskite-type hybrids [(C(n)H(2n+1)NH3)2PbI4], n = 7, 8, 9 and 10

Four inorganic-organic hybrid materials that consist of 2-D layers of corner-sharing lead(II) iodide octahedra separated by alkylammonium chains have been crystallized and characterized via single-crystal XRD (SCXRD). The four hybrids, represented by the general formula [(C(n)H(2n+1)NH(3))(2)PbI(4)] and abbreviated C(n)PbI, exhibit multiple reversible phase transitions for a narrow temperature range. The transition temperatures were determined with differential scanning calorimetry experiments. The number of transitions and the transition temperatures are dependant on the chain length; for n = 7 and 10, there are three transitions, and for n = 8 and 9, there are two transitions. Regardless of the number of transitions, all four compounds have identical lowest temperature phases, which have inorganic layers that are eclipsed, non-planar conformations of the alkyl ammonium chains and yellow-coloured crystals. The next highest temperature phase for three of the compounds (C(10)PbI goes through an intermediate phase first), has staggered inorganic layers, all-trans planar conformations of the chains and orange coloured crystals. The highest temperature phase for n = 8 and 10 has red-coloured crystals and shows a disordering of the alkylammonium chains over two positions and staggered inorganic layers. The high temperature phase of C(7)PbI retains its orange colour and has only increased thermal motion of its alkylammonium chain. The structure of the high temperature phase of C(9)PbI was not determined. The SCXRD structures of the various phases give clues to the structural changes that the compounds undergo at the phase transitions, which will now enable future studies of their optical and electronic properties to be better understood.     

Probing molecular structure at interfaces for comparison with bulk solution behavior: water/2-propanol mixtures monitored by vibrational sum frequency spectroscopy

The orientation of the isopropyl group at the liquid/vapor interface in 2-propanol/water binary mixtures was studied by vibrational sum frequency spectroscopy. The CH(3) stretch modes of the two methyl groups were used to determine the molecule's orientation by employing a novel united atom approach to model the (CH(3))(2)X moiety. For this purpose, the changes in the molecular susceptibility of the isopropyl group stretches were derived in the laboratory frame as a function of the tilt and twist angles. The results indicated that the methyl groups lay down on the surface at low alcohol mole fraction and gradually twisted with increasing mole fraction. At the azeotrope, x(iso) = 0.68, one of the methyl groups aligned approximately parallel to the surface normal, whereas the other was nearly parallel with the liquid/vapor interface. When the mole fraction of 2-propanol was higher than 0.68, the orientation of 2-propanol remained almost constant. The change in the alcohol's orientation with 2-propanol mole fraction closely tracked changes in its bulk activity coefficient. Such results lead to a picture in which the surface structure and bulk properties of the system are closely linked.     

Molecular simulation studies of the structure of phosphorylcholine self-assembled monolayers

We report a study of the structure of phosphorylcholine self-assembled monolayers (PC-SAMs) on Au(111) surfaces using both molecular mechanics (MM) and molecular dynamics (MD) simulation techniques. The lattice structure (i.e., packing densities and patterns) of the PC chains was determined first, by examining the packing energies of different structures by MM simulations in an implicit solvent. The chain orientation (i.e., antiparallel and parallel arrangements of the PC head groups) was then evaluated. The initial azimuthal angles of the PC chains were also adjusted to ensure that the optimal lattice structure was found. Finally, the two most probable lattice structures were solvated with explicit water molecules and their energies were compared after 1.5 ns of MD simulations to verify the optimal structures obtained from MM. We found that the optimal lattice structure of the PC-SAM corresponds to a radical7 x radical7 R19degree lattice structure (i.e., surface coverage of 50.4 A(2)molecule) with a parallel arrangement of the head groups. The corresponding thickness of the optimal PC-SAM is 13.4 A which is in agreement with that from experiments. The head groups of the PC chains are aligned on the surface in such a way that their dipole components are minimized. The P-->N vector of the head groups forms an angle of 82 degrees with respect to the surface normal. The tilt direction of molecular chains was observed to be towards their next nearest neighbor.     

10,12-双炔甘三酸镉盐LB膜的FT-IR光谱

近年来,由于LB膜在功能器件中(如光电子器件,微型电池、低维半导体、热释电探测器等)显示出了令人兴奋的应用前景,因此有越来越多的人致力于LB膜的研究工作.其中对LB膜的成膜质量的评价,特别是LB膜的分子取向问题,是一个非常引人关注的问题.此外,对于碳原子数大于20,熔点小于45℃的系列双炔酸(R—C≡C—C≡C—R′)可以利用LB技术制备多层膜.这类LB膜在紫外光或电子束的作用下可以迅速发生聚合.利     

New ferroelectric liquid crystalline materials with an azo group in the molecular core

Six series of new liquid crystalline materials with an azo group (N=N) located in different parts of the mesogenic core of the molecule have been synthesized and their physical properties studied. The chiral segments of these materials are based on alkoxypropionate or alkyllactate units. It has been found that lateral methyl substitution on a phenyl ring in the molecular core disturbs the packing of the molecules. As a result smectic phases disappear and the phase transition temperatures decrease. In addition, shifting the N=N group closer to the chiral centre of the molecule leads to the disappearance of the ferroelectric SmC* phase. For the compounds which show the ferroelectric SmC* phase, the temperature dependence of the spontaneous polarization, the spontaneous tilt angle, the helix pitch length and the complex permittivity has been studied. The effect of shifting the azo group in the molecular core on the physical properties is discussed.