The crystal structures of a chiral aminoalkoxide cluster and its adduct with benzyllithium

The crystal structures of the chiral aminoalkoxide cluster (S)-2 and its unexpected adduct with benzyllithium (S)-3 have been determined. For compound (S)-2, a hexameric cyclic ring-ladder is observed in the solid state, which leads to an unshielded coordination site in a chiral pocket that is only accessible from one direction. The presence of (S)-2 leads to the deprotonation of toluene by n-butyllithium, giving benzyllithium. In contrast to earlier studies on lithium alkoxides, the resulting adduct (S)-3 between benzyllithium and (S)-2 is not formed by the exchange of alkoxy groups for alkanide units, as has been observed for a multitude of examples. Compound (S)-3 therefore represents a thus far unconsidered type of structure: the unshielded "top side" of the aminoalkoxide cluster (S)-2 capped by the lithium center of benzyllithium via three Li-O interactions.     

Synthesis,crystal structures and spectroscopic properties of dichloroethylphenyltin(IV) and its phenanthroline adduct

The reaction of dichloroethylphenyltin(IV), Ph(Et)SnCl₂, with phenanthroline monohydrate (phen·H₂O) in chloroform, in 1:1 mole ratio, afforded [Ph(Et)SnCl₂(phen)]. The crystal structures of dichloroethylphenyltin(IV) and its phenanthroline adduct were studied by X‐ray diffraction. In Ph(Et)SnCl₂ the tin atom is in a distorted tetrahedral environment, the distortion probably being imposed by weak intermolecular Sn· · ·Cl interactions. In [Ph(Et)SnCl₂(phen)] the tin atom is in an octahedral trans‐C₂, cis‐Cl₂, N₂ environment and weak intermolecular C–H· · ·Cl interactions connect the molecules throughout the lattice. Spectroscopic studies in solution (¹H, ¹³C and ¹¹⁹Sn NMR) were also carried out; the ¹H and ¹³C NMR data in dimethylsulfoxide suggest that [Ph(Et)SnCl₂(phen)] remains at least partially undissociated in this solvent. Copyright © 2003 John Wiley & Sons, Ltd.     

X-ray crystal structures of reduced rubrerythrin and its azide adduct: a structure-based mechanism for a non-heme diiron peroxidase

Rubrerythrin (Rbr) is a 44-kDa homodimeric protein, found in many air-sensitive bacteria and archaea, which contains a unique combination of a rubredoxin-like [Fe(SCys)(4)] site and a non-sulfur, oxo/dicarboxylato-bridged diiron site. The diiron site structure resembles those found in O2-activating diiron enzymes. However, Rbr instead appears to function as a hydrogen peroxide reductase (peroxidase). The diferrous site in all-ferrous Rbr (Rbr(red)) shows a much greater reactivity with H2O2 than does the diferric site in all-ferric Rbr (Rbr(ox)), but only the latter structure has been reported. Here we report the X-ray crystal structures of the recombinant Rbr(red) from the sulfate reducing bacterium, Desulfovibrio vulgaris, as well as its azide adduct (Rbr(red)N3). We have also redetermined the structure of Rbr(ox) to a higher resolution than previously reported. The structural differences between Rbr(ox) and Rbr(red) are localized entirely at the diiron site. The most striking structural change upon reduction of the diferric to the diferrous site of Rbr is a 1.8-A movement of one iron away from a unique glutamate carboxylate ligand and toward a trans-disposed histidine side chain, which replaces the glutamate as a ligand. This movement increases the inter-iron distance from 3.3 to 4 A. Rbr(red)N(3) shows this same iron movement and His-->Glu ligand replacement relative to Rbr(ox), and, in addition, an azide coordinated to the diiron site in a cis mu-1,3 fashion, replacing two solvent ligands in Rbr(red). Relative to those in O2-activating enzymes, the bridging carboxylate ligation of the Rbr diiron site is less flexible upon diferric/diferrous interconversion. The diferrous site is also much more rigid, symmetrical, and solvent-exposed than those in O2-activating enzymes. On the basis of these unique structural features, a mechanism is proposed for facile reduction of hydrogen peroxide by Rbr involving a cis mu-eta(2) H2O2 diferrous intermediate.     

Quinoxaline-annelated Z-shaped quadruple-bridged orthocyclophanes: synthesis and crystal structures

A three-step synthesis of nineteen Z-shaped quadruple-bridged [6,6] and [6,4]orthocyclophanes comprising two quinoxaline-based sidewalls are described. The synthesis began from the bis-Diels−Alder adducts B1-B3 followed by ruthenium-promoted oxidation of dichloroetheno-bridges in the adducts to generate a bis-α-diketones, which were then condensed with various arene-1,2-diamines (9a-g) to construct sidewalls (phane parts) of Z-shaped quadruple-bridged orthocyclophanes D1-3, D2g, and D3g. Single-crystal structures of six orthocyclophanes (D1a, D2a, D2f, D3f, D2g-α, and D3g-α) were obtained and revealed that the C_Ar−H?π and π?π stacking interactions between N-containing arene rings are the major driving force for molecular assembly and crystal packing, in addition to the interactions involving the polar OCH₃ groups and the solvate molecules.     

Chalcogenolato-di-thiocarbamato-complexes of zinc: The X-ray single crystal structures of pyridine adducts

Novel mixed complexes 2,4,6-Me₃C₆H₂SZnS₂CNEt₂ (1), 2,4,6-Me₃C₆H₂SeZnSe₂CNEt₂ (2) and their pyridine adducts ([Zn(SC₆H₂Me₃-2,4,6)₂(C₅H₅N)₂] (3), [Zn(SeC₆H₂Me₃-2,4,6)₂(C₅H₅N)₂] (4) and (Et₂CNSe₂)₂Zn.NC₅H₅ (5) and (Et₂CNS₂)₂Zn.NC₅H₅ (6) have been synthesised and characterised. The X-ray single crystal structures of (4), (5) and (6) have been determined.     

Semiclathrates of the Ge-P-Te system: synthesis and crystal structures

Novel compounds [Ge_46?xP_x]Te_y (13.9≤x≤15.6, 5.92≤y≤7.75) with clathrate‐like structures have been prepared and structurally characterized. They crystallize in the space group Fm$\bar 3Novel compounds [Ge(46-x) P(x) ]Te(y) (13.9≤x≤15.6, 5.92≤y≤7.75) with clathrate-like structures have been prepared and structurally characterized. They crystallize in the space group Fm ?3 with the unit cell parameter changing from 20.544(2) to 20.698(2) ? (Z=8) on going from x=13.9 to x=15.6. Their crystal structure is composed of a covalently bonded Ge-P framework that hosts tellurium atoms in the guest positions and can be viewed as a peculiar variant of the type?I clathrate superstructure. In contrast to the conventional type I clathrates, [Ge(46-x) P(x) ]Te(y) contain tricoordinated (3b) atoms and no vacancies in the framework positions. As a consequence of the transformation of the framework, the majority of the guest tellurium atoms form a single covalent bond with the host framework and thus the title compounds are the first representative of semiclathrates with covalent bonding. A comparison is made with silicon clathrates and the evolution of the crystal structure upon changing the tellurium content is discussed.     

Synthesis,crystal, molecular and electronic structures of thiocyanate ruthenium complexes with pyridine and its derivatives as ligands

The complexes [Ru(SCN)₂(PPh₃)₂(L)₂], where L = py and γ-pic, and [Ru(SCN)₂(PPh₃)₂(L)], where L = py-2-CH₂NH₂ and py-2-CH₂O, have been prepared and studied by IR, NMR, EPR, UV–Vis spectroscopy and X-ray crystallography. The complexes were prepared in the reactions of [RuCl₂(PPh₃)₃] with pyridine, γ-picoline, 2-(aminomethyl)pyridine and 2-(hydroxymethyl)pyridine in methanol solutions. The electronic structures of the obtained compounds have been calculated using the DFT/TD-DFT method.     

Optically active derivatives of terephthalic acid: synthesis and crystal structures

New optically active derivatives of terephthalic acid, which are of interest as precursors of chiral metal-organic frameworks (MOFs), were synthesized starting from available dimethyl 2-aminoterephthalate, N-Boc-l-alanine, and N-Boc-l-proline. The crystal structures of three samples were determined by powder X-ray diffraction. In all three structures, the acid molecules exist as zwitterions.     

Synthesis and crystal structures of two polymorphs of sulfathiazole:pyridine (1:1) adducts

The paper summarizes recent results on crystallization and characterization of two polymorphs of the sulfathiazole:pyridine (1:1) adducts with substantially different space groups (P4₁ and P2₁/c) and packing. Intermolecular interactions in the adducts are compared. These two forms were obtained from solutions containing different ratios of n-propanol, not participating directly in crystallization but obviously controlling the polymorphism, and pyridine. The adducts are also formed by the contact of pure solid sulfathiazole (different polymorphs) with pyridine vapor. In air, the adducts decompose giving initially the metastable polymorph I of sulfathiazole, and then the stable sulfathiazole-III.

A new dirhodium tetraacetate carbenoid: Synthesis, crystal structure and catalytic application

A new dirhodium tetraacetate II involving 1,3-bis(2,6-diisopropylphenyl)-imidazol-2-ylidene I was synthesized and characterized by general spectroscopic tools in the solution state as well as single X-ray crystallographic analysis in the solid state. The catalytic activity of dirhodium tetraacetate carbenoid II was tested for the allylic oxidation, and the improved reactivity to the allylic oxidation was observed compared to that of Rh₂(OAc)₄. The different electrochemical properties of dirhodium tetraacetate carbenoid II and Rh₂(OAc)₄ were compared via cyclic voltammetry.     

Ionothermal synthesis and crystal structures of metal phosphate chains

We have prepared isostructural aluminium and gallium phosphate chains by ionothermal reactions in 1-ethyl-3-methylimidazolium bromide and 1-ethylpyridinium bromide under a variety of conditions. The chains can be prepared as pure phases or along with three dimensional framework phases. The chains are favoured at shorter heating times and the crystallinity can be improved by addition of transition metal acetates and amines which are not included in the final structure. The chain can be prepared with or without the presence of hydrofluoric acid.     

Lanthanoid-containing open Wells-Dawson silicotungstates: synthesis, crystal structures, and properties

Five novel lanthanoid-containing silicotungstates with polymeric crystal structures [Ln(2)(H(2)O)(7)Si(2)W(18)O(66)](n)(10n-) [Ln = Gd(III) (Gd-1 and Gd-2), Tb(III), Ho(III)] and [Dy(2)(H(2)O)(6.5)(C(2)H(4)O(2))(0.5)Si(2)W(18)O(66)](n)(10n-) were obtained from the one-step reaction of Na(10)[SiW(9)O(34)]·nH(2)O with Ln(NO(3))(3)·nH(2)O in a sodium acetate buffer. The compounds were characterized by single-crystal X-ray diffraction and a wide range of analytical methods, including FT-IR, UV/vis, and photoluminescence spectroscopy as well as electrochemistry and thermogravimetric analysis. This new polyoxotungstate series is the first example of lanthanoids embedded in the open Wells-Dawson silicotungstate anion [α-Si(2)W(18)O(66)](16-). The lanthanoid-containing Wells-Dawson-type polyoxoanions [Ln(2)(H(2)O)(7)Si(2)W(18)O(66)](10-) [Ln = Gd(III) (Gd-1 and Gd-2), Tb(III), Ho(III)] and [Dy(2)(H(2)O)(6.5)(C(2)H(4)O(2))(0.5)Si(2)W(18)O(66)](10-) are linked by Ln(3+) cations to form 3D architectures for Gd-1 or 2D frameworks for the isostructural compounds Tb-2, Dy-2, Ho-2, and Gd-2. The structure-directing influence of the lanthanoid cation on the local structure of the dimeric building blocks and on the crystal packing motifs is investigated in detail. The photoluminescence properties of Tb-2 and Dy-2 were investigated at room temperature, and Ho-2 exhibits an interesting photochromic behavior. The magnetic susceptibility of Gd-1 and Gd-2 was studied in the temperature range between 2 and 300 K for its effective magnetic moment.     

Organoantimony(V) cyanoximates: synthesis,spectra and crystal structures

A series of 25 new organoantimony(V) cyanoximates has been synthesized and studied using IR, visible, and NMR spectroscopy and X-ray analysis. Crystal structures were determined for compounds (C6H5)4Sb[ONC(CN)C(O)NH2] (1) and (C6H5)4Sb[ONC(CN)C(O)N(CH3)2] (2). Both complexes crystallized in the monoclinic space group P2(1)/c (Z = 4) with unit cell parameters (A, grad) of a = 14.921(3), b = 10.165(2), c = 17.571(7), beta = 113.26(6) for compound 1, and a = 16.415(4), b = 10.406(3), c = 17.152(3), beta = 17.152(3), beta = 117.79(2) for compound 2. For 5438 and 5056 independent reflections the refinement yielded R-factors 0.022 and 0.037 for the structures of 1 and 2, respectively. Cyanoxime anions are bound to the antimony(V) atoms in a monodentate fashion via the oxygen atoms of the oxime groups. The ligands adopt trans-anti configuration in these compounds. The coordination polyhedron in both complexes is a distorted trigonal bipyramid with the axial location of the cyanoxime ligand. A similar binding mode of other anions in synthesized organoantimony(V) complexes has been offered on the basis of the similarity of their IR spectra to those of the compounds whose structures were determined crystallographically. The exact assignment of vibrations involving the oxime group was carried out using synthesized 15N(53%), isotopomers.     

Quinolyl-functionalised Cp-chromium polymerisation catalysts: synthesis and crystal structures of alkylation products

The quinolyl-functionalised Cp-chromium(III) complexes 1 and 2, which serve as precursors for highly active olefin polymerisation catalysts, were alkylated with benzylmagnesium chloride. From these reactions, the new metal complexes 4, 5 and 6 were obtained and structurally characterised. The expected alkylchromium compound 4 is formed together with complex 5, where the nucleophile replaced a hydrogen atom at the quinoline substituent. The dinuclear complex 6 is formed by nucleophile addition, rearrangement and dimerisation.     

Palladate salts from chiral pyridinium ionic liquids: synthesis and crystal structures

This paper reports the preparation, characterization and the crystal X-ray structures of metal-containing ionic liquid complexes based on chiral pyridinium cations and tetrachloropalladate (II) [PdCl4]2-.     

Hypervalent organoselenium compounds stabilized by intramolecular coordination: synthesis and crystal structures

Two novel hypervalent selenium(IV) compounds stabilized by intramolecular interactions, namely 6‐phenyl‐6,7‐dihydro‐5H‐2,3‐dioxa‐2aλ⁴‐selenacyclopenta[hi]indene, C₁₄H₁₂O₂Se, 14 , and 5‐phenyl‐5,6‐dihydro‐4H‐benzo[c][1,2]oxaselenole‐7‐carbaldehyde, C₁₄H₁₂OSe₂, 15 , have been synthesized by the reaction of 2‐chloro‐1‐formyl‐3‐(hydroxymethylene)cyclohexene with in‐situ‐generated disodium diselenide (Na₂Se₂). The title compounds were characterized by FT–IR spectroscopy, ESI–MS, and single‐crystal X‐ray diffraction studies. For 14 , there is whole‐molecule disorder, with occupancies of 0.605 (10) and 0.395 (10), a double bond between C and Se, and the five‐membered selenopentalene rings are coplanar. The packing is stabilized by π–π stacking interactions involving one of the five‐membered Se/C/C/C/O rings [centroid–centroid (Cg…Cg) distance = 3.6472 (18) Å and slippage = 1.361 Å], as well as C—H…π interactions involving a C—H group and the phenyl ring. In addition, there are bifurcated C—H…Se,O interactions which link the molecules into ribbons in the c direction. For 15 , the C—Se bond lengths are longer than those of 14 . The two five‐membered rings are coplanar. There are no π–π or C—H…π interactions; however, molecules are linked by C—H…O interactions into centrosymmetric dimers, with graph‐set notation R₂²(16).     

Two- and three-dimensional lanthanide complexes: synthesis, crystal structures, and properties

3,5-pyrazoledicarboxylic acid (H3L) reacts with nitrate salts of lanthanide(III) (Ln=Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, and Er) under hydrothermal conditions to form a series of lanthanide polymers 1-9. These nine polymers have the same crystal system of monoclinic, but they exhibit three different kinds of metal-organic framework structures. The complexes {[Ln2(HL)3(H2O)4].2H2O}n (Ln=Pr (1), Nd (2), and Sm (3)) were isostructural and exhibited porous 3D frameworks with a Cc space group. The complexes {[Ln2(HL)3(H2O)3].3H2O}n (Ln=Eu (4), Gd (5), and Tb (6)) were isostructural and built 2D double-decker (2DD) frameworks with a P21/c space group. The complexes {[Ln(HL)(H2L)(H2O)2]}n ((Ln=Dy (7), Ho (8), and Er (9)) were also isostructural and formed 2D monolayer (2DM) frameworks with a P21/n space group. The structure variation from the 3D porous framework to the 2D double-decker to the 2D monolayer is attributed to the lanthanide contraction effect. Notably, six new coordination modes of 3,5-pyrazoledicarboxylic acid were observed, which proved that 3,5-pyrazoledicarboxylic acid may be used as an effective bridging ligand to assemble lanthanide-based coordination polymers. The photophysical and magnetic properties have also been investigated.     

Stereoisomers of 1,3,5,7-tetrahydroxy-1,3,5,7-tetraisopropylcyclotetrasiloxane: synthesis and structures in the crystal

The first synthesis of all four stereoisomers of 1,3,5,7-tetrahydroxy-1,3,5,7-tetraisopropylcyclotetrasiloxane, [i-PrSiO(OH)]4 (all-trans-, cis-cis-trans-, cis-trans-cis-, and all-cis-1), is presented. The starting compounds, all-trans-, cis-cis-trans-, cis-trans-cis-, and all-cis-1,3,5,7-tetraaryl-1,3,5,7-tetraisopropylcyclotetrasiloxanes, were prepared by the hydrolysis of the corresponding arylisopropyldichlorosilanes, i-PrArSiCl2 (Ar = Ph, p-tolyl), and subsequent separation of isomers. A combination of dephenylchlorination of tetraarylcyclotetrasiloxanes and the following hydrolysis proved to be an efficient method for the stereospecific transformation of aryl-substituted cyclotetrasiloxanes into (i-PrSiO(OH))4. For example, treatment of cis-trans-cis-1,3,5,7-tetraphenyl-1,3,5,7-tetraisopropylcyclotetrasilane with HCl and AlCl3, followed by hydrolysis in the presence of pyridine, resulted in the exclusive formation of cis-trans-cis-1 in 92% yield. The structures of cis-cis-trans-1, cis-trans-cis-1, and all-cis-1 were determined by X-ray crystallography. All isomers were found to construct unique packing structures by intermolecular hydrogen bonding; cis-trans-cis-1 composed an infinite antiladder structure, and cis-cis-trans-1 formed a sheetlike structure.     

Cyanocalix[4]arenes: synthesis,crystal structures and reactivity studies

Abstract

Herein, we describe an improved method to synthesise mono-, di- and tetra-cyanocalix[4]arene and report their crystal structure determinations. We also report our attempts to further functionalise the cyanocalix[4]arenes into dithiadiazolyl-calix[4]arenes, and propose a hypothesis as to why the cyano group on a calix[4]arene is an extremely challenging group to modify.     

Vinyl-functionalized multicolor benzothiadiazoles: design,synthesis, crystal structures and mechanically-responsive performance

Benzothiadiazole(BTD) has been extensively used as a building block in optical materials. In this work, a class of π-conjugated BTD-based luminogens BTD-685, BTD-580, BTD-675 and BTD-565 were designed by varying donor units and facilely synthesized by Heck coupling reaction. It was found that their emission in solid state covered the regio from orange, red to near infrared fluorescence. Investigation on photo-physical property manifested that they had strong solvatochromic behavior except symmetric 2-vinylpyridine substituted BTD-565. Crystal X-ray diffraction analysis revealed that they involved in multi weak intermolecular interactions. And loose molecular packing implied that they can be easily rearranged under external force stimuli.Indeed, all compounds showed reversible mechanically-responsive behavior in solid state. Interestingly, the vinylpyridinecontaining BTD-565 exhibited hypochromatic mechanochromic behavior, whereas others showed bathochromic mechanochromism behavior. It was worth mentioning that BTD-675 had self-recovery behavior after grinding. The powder X-ray diffraction study showed that these chromic processes may be mainly attributed to the reversible morphological changes between crystalline and amorphous phase upon grinding or fuming. These observations suggested that the vinyl-functionalized benzothiadiazoles can be considered as a type of excellent candidates in mechanically-responsive chromic materials.