Optimised adiabatic fast passage spin flipping for He neutron spin filters

We describe here a method of performing adiabatic fast passage (AFP) spin flipping of polarized ³He used as a neutron spin filter (NSF) to polarize neutron beams. By reversing the spin states of the ³He nuclei the polarization of a neutron beam can be efficiently reversed allowing for the transmission of a neutron beam polarized in either spin state. Using an amplitude modulated frequency sweep lasting 500 ms we can spin flip a polarized ³He neutron spin filter with only 1.8×10⁻⁵ loss in ³He polarization. The small magnetic fields (10-15 G) used to house neutron spin filters mean the ³He resonant frequencies are low enough to be generated using a computer with a digital I/O card. The versatility of this systems allows AFP to be performed on any beamline or in any laboratory using ³He neutron spin filters and polarization losses can be minimised by adjusting sweep parameters.     

Flow field mapping by multi-zone adiabatic passage excitation

This paper describes a robust method for flow field mapping by multi-zone adiabatic fast passage (AFP). It provides a quick and simple way to simultaneously acquire flow profiles at several locations and arbitrary orientations inside the field-of-view. The flow profile is the time-averaged evolution of the labeled flowing material. Results obtained using a carotid bifurcation and jet phantoms are similar to the previous experimental studies employing Laser Doppler Anemometry (LDA), and other flow visualization techniques. In addition, the preliminary results abtained with a human volunteer support the feasibility of the technique for in vivo flow quantification.     

Generation of atomic entangled states in a bi-mode cavity via adiabatic passage

We propose schemes to prepare atomic entangled states in a bi-mode cavity via stimulated Raman adiabatic passage (STIRAP) and fractional stimulated Raman adiabatic passage (f-STIRAP) techniques. Our scheme should be realizable in the near future because of the existence of all experimental ingredients. Our numerical simulation shows we can entangle the atoms with high fidelities by choosing proper laser pulses.     

Histogram parameters derived from T1 and T2 weighted images correlate with tumor infiltrating lymphocytes and tumor-stroma ratio in head and neck squamous cell cancer

PurposeThe present study used histogram analysis values derived from T1- and T2- weighted (w) images to elucidate possible associations with Tumor-infiltrating lymphocytes (TIL) and Vimentin expression in head and neck squamous cell cancer (HNSCC).Materials and methodsOverall, 28 patients (n = 8 female patient, 28.6%) with primary HNSCC of different localizations were involved in the study. Magnetic resonance imaging (MRI) was obtained on a 3 T MRI. The images were analyzed with a whole lesion measurement using a histogram approach. TIL- and vimentin-expression was calculated on biopsy samples before any form of treatment.ResultsSeveral T1-derived parameters correlated with the expression of TIL within the stroma compartment: mean (r = 0.42, p = 0.025), p10 (r = 0.50, p = 0.007), p25 (r = 0.42, p = 0.025), median (r = 0.39, p = 0.036), and mode (r = 0.39, p = 0.04). No T2-derived parameter correlated with the TIL within the stroma compartment. Several T2-derived parameters correlated with the expression of TIL within the tumor compartment: mean (r = −0.52, p = 0.004), max (r = −0.43, p = 0.02), p10 (r = −0.38, p = 0.04), p25 (r = −0.53, p = 0.004), p75 (r = −0.52, p = 0.004), p90 (r = −0.48, p = 0.009), median (r = −0.52, p = 0.004), mode (r = −0.40, p = 0.03). Kurtosis derived from T2w images had significant higher values in tumor-rich tumors, compared to stroma-rich tumors, (mean 5.5 ± 0.5 versus 4.2 ± 1.2, p = 0.028).ConclusionsHistogram analysis parameters derived from T1w and T2w images might be able to reflect tumor compartments and TIL expression in HNSCC.     

Spin-lattice relaxation and a fast T1-map acquisition method in MRI with transient-state magnetization

The magnetization under the spin-lattice relaxation and the nuclear magnetic resonance radiofrequency (RF) pulses is calculated for a signal RF pulse train and for a sequence of multiple RF pulse-trains. It is assumed that the transverse magnetization is zero when each RF pulse is applied. The result expressions can be grouped into two terms: a decay term, which is proportional to the initial magnetization M0, and a recovery term, which has no M0 dependence but strongly depends on the spin-lattice relaxation and the equilibrium magnetization Meq. In magnetic resonance pulse sequences using magnetization in transient state, the recovery term produces artifacts and can seriously degrade the function of the preparation sequence for slice selection, contrast weighting, phase encoding, etc. This work shows that the detrimental effect can be removed by signal averaging in an eliminative fashion. A novel fast data acquisition method for constructing the spin-lattice relaxation (T1) map is introduced. The method has two features: (i) By using eliminative averaging, the curve to fit the T1 value is a decay exponential function rather than a recovery one as in conventional techniques; therefore, the measurement of Meq is not required and the result is less susceptible to the accuracy of the inversion RF pulse. (ii) The decay exponential curve is sampled by using a sequence of multiple pulse-trains. An image is reconstructed from each train and represents a sample point of the curve. Hence a single imaging sequence can yield multiple sample points needed for fitting the T1 value in contrast to conventional techniques that require repeating the imaging sequence for various delay values but obtain only one sample point from each repetition.     

An automatic cerebellum extraction method in T1-weighted brain MR images using an active contour model with a shape prior

Purpose

The objective of this paper was to automatically segment the cerebellum from T1-weighted human brain magnetic resonance (MR) images.

Materials and Methods

The proposed method constructs a cerebellum template using five sets of 3-T MR imaging (MRI) data, which are used to determine the initial position and the shape prior of the cerebellum for the active contour model. Our formulation includes the active contour model with shape prior, which thereby maintains the shape of the template. The proposed active contour model is sequentially applied to sagittal-, coronal- and transverse-view images. To evaluate the proposed method, it is applied to BrainWeb data and a 3-T MRI data set and compared with FreeSurfer with respect to performance assessment metrics.

Results

The segmented cerebellum was compared with the results from FreeSurfer. Using the manually segmented cerebellum as reference, we measured the average Jaccard coefficients of the proposed method, which were 0.882 and 0.885 for the BrainWeb data and 3-T MRI data set, respectively.

Conclusion

We presented the active contour model with shape prior for extracting the cerebellum from T1-weighted brain MR images. The proposed method yielded a robust and accurate segmentation result.     

Structure and function studies on enzymes with a catalytic carboxyl group(s): from ribonuclease T1 to carboxyl peptidases

A group of enzymes, mostly hydrolases or certain transferases, utilize one or a few side-chain carboxyl groups of Asp and/or Glu as part of the catalytic machinery at their active sites. This review follows mainly the trail of studies performed by the author and his colleagues on the structure and function of such enzymes, starting from ribonuclease T₁, then extending to three major types of carboxyl peptidases including aspartic peptidases, glutamic peptidases and serine-carboxyl peptidases.