Genome-wide computational identification of microRNAs and their targets in the deep-branching eukaryote Giardia lamblia

Using a combined computational program, we identified 50 potential microRNAs (miRNAs) in Giardia lamblia, one of the most primitive unicellular eukaryotes. These miRNAs are unique to G. lamblia and no homologues have been found in other organisms; miRNAs, currently known in other species, were not found in G. lamblia. This suggests that miRNA biogenesis and miRNA-mediated gene regulation pathway may evolve independently, especially in evolutionarily distant lineages. A majority (43) of the predicted miRNAs are located at one single locus; however, some miRNAs have two or more copies in the genome. Among the 58 miRNA genes, 28 are located in the intergenic regions whereas 30 are present in the anti-sense strands of the protein-coding sequences. Five predicted miRNAs are expressed in G. lamblia trophozoite cells evidenced by expressed sequence tags or RT-PCR. Thirty-seven identified miRNAs may target 50 protein-coding genes, including seven variant-specific surface proteins (VSPs). Our findings provide a clue that miRNA-mediated gene regulation may exist in the early stage of eukaryotic evolution, suggesting that it is an important regulation system ubiquitous in eukaryotes.     

Genome-wide computational analyses of microRNAs and their targets from Canis familiaris

By computational analyses, we identified 357 miRNA candidates from Canis familiaris genome, among which 300 are homology of characterized human miRNAs, the remains are not reported in any other animal. Of the 357 miRNA genes, 142 are organized into 53 clusters, and two clusters locate in the paternally imprinted region. These dog miRNAs may regulate more than 800 possible targets, which are involved in a wide range of cellular processes. Remarkably, miR-186 resides in the eighth intron of its target gene in the same orientation, suggesting a feedback regulation of miRNA on its host gene.     

Qualitative and quantitative analyses of three bioactive compounds in different parts of Forsythia suspensa by high-performance liquid chromatography-electrospray ionization-mass spectrometry

A high-performance liquid chromatography-electrospray ionization-mass spectrometry (HPLC-ESI-MS) analytical method was developed to simultaneously detect and quantify three main distinctive compounds (forsythiaside, rutin and forsythin) in different parts of Forsythia suspensa (F. suspensa), an herbal medicine. This was the first report on the quantification of bioactive constituents in different parts of F. suspensa by HPLC-ESI-MS analytical method. The calibration curves of the three compounds showed good linearity (R² > 0.9994). The method was reproducible with intra- and inter-day variation less than 1.35% and 2.00%, respectively. The recovery of the assay was in the range of 98.27–101.07%. The results indicated that the developed assay could be considered as a suitable quality control method for this commonly used herbal medicine.     

Two new diterpene and sesquiterpene from Pteris dispar

A new diterpene and a new sesquiterpene were isolated from Pteris dispar and identified on the basis of spectral data including 2D NMR.Compounds 1 and 2 showed potent cytotoxic activity against KB cell.     

Croomine- and tuberostemonine-type alkaloids from roots of Stemona tuberosa and their antitussive activity

Three new croomine-type Stemona alkaloids, tuberocrooline (1), 10-hydroxycroomine (2), and dehydrocroomine (3), and four new tuberostemonine-type alkaloids, tuberostemoline (4), tridehydrotuberostemonine (5), 9α-bisdehydrotuberostemonine (6), and 9α-bisdehydrotuberostemonine A (7), along with ten known constituents, were isolated from the roots of Stemona tuberosa collected from Yunnan province. The structures of the new compounds were established on the basis of one- and two-dimensional NMR spectra and other spectroscopic studies. The antitussive activity of the major alkaloids was tested using the citric acid-induced guinea pig cough model. Croomine (8) exhibited a dose-dependent inhibition of coughing with an ID₅₀ value of 0.18 mmol/kg.     

The chemical constituents from Schisandra propinqua var. intermedia

A new cinnamic acid monoterpenoid ester, intermedin C （1）, was isolated from the aerial parts of Schisandra propinqua var. interthedia. The structure of 1 was elucidated by spectroscopic methods including extensive ^1D and 2D NMR techniques.     

Two new dammarane-type sapogenins from Gynostemma pentaphyllum

Two new sapogenins,named(20S,24R)-3β,20,21β,25-tetrahydroxy-21,24-cyclodammarane(1)and 3β-hydroxyetio-17β-dammaranic acid(2),were isolated from the alkaline hydrolysate of Gynostemma pentaphyllum saponins.Their structures were elucidated by spectroscopic methods.     

New Pyrrolo[1,2-a]azepine Type Alkaloids from Stemona and Stichoneuron (Stemonaceae)

Summary. Three new pyrroloazepine type alkaloids, stichoneurines A and B and 6-hydroxycroomine were isolated from the lipophilic root extracts of Stichoneuron caudatum and Stemona tuberosa collected in Thailand together with the already known croomine, tuberostemonine, and tuberostemonine A. The structures were elucidated by spectroscopic methods including H/H-COSY, HMQC, and HMBC. Information on the relative stereochemistries and conformational behaviour was obtained by analysis of the NOESY spectra. The formation of pyrroloazepine alkaloids in the genus Stichoneuron is reported for the first time and supports its affiliation to the family Stemonaceae. The occurrence of two different types of alkaloids, of the tuberostemonine and croomine series, in different geographical provenances of Stemona tuberosa is of special chemosystematic interest and may contribute to a more natural species delimitation within that complex group.     

Formation and Characterization of Large (Ar) n , (N2) n , and Mixed (Ar) n (N2) m van der Waals Clusters Produced by Supersonic Expansion

This paper reports the formation and characterization of large (Ar) _n , (N₂) _n , and mixed binary (Ar) _n (N₂) _m van der Waals clusters produced at room temperature in the process of supersonic expansion. The average cluster size is determined by the buffer gas induced beam-broadening technique. For both Ar and N₂ clusters, power variations of the average cluster size with the gas stagnation pressure P ₀ give size scaling as . The average cluster sizes of argon vary from 2950 to more than 30900 atoms per cluster with the argon gas stagnation pressures ranging from 4 to 14 bars, and of nitrogen vary from 600 to more than 10400 molecules per cluster with the nitrogen gas stagnation pressures ranging from 8 to 38 bars. The mixed binary (Ar) _n (N₂) _m cluster is produced by supersonic expansion of an Ar–N₂ mixture. The large mixed binary (Ar) _n (N₂) _m clusters with the average sizes n + m between 1000 and 16000 are obtained. In coexpansion of Ar–N₂ mixture, we find that the argon concentration becomes higher in the beam than before the expansion. This finding is discussed and may be helpful for further insight into the phenomenon of clustering.     

Two new lanostane triterpenoids from Abies sachalinensis

The continuous chemical investigation on the ethyl acetate （EtOAc） soluble fraction of the MeOH extract afforded two new lanostane triterpenoid derivatives including one with a rearranged lanostane skeleton. They were identified as 3,4-seco-8-（14→13R）abeo-17,13-friedo-9β-lanosta-4（28）, 7,14（30）,24-tetraen-26,23-olide-23-hydroxy-3-oic acid （1） and 7,14-mariesa- dien-3oL-hydroxy-25-methoxy-26-oic acid （2）. Structural determination of these compounds were carried out by the spectral studies especially by the two digital （2D）-NMR and high-resolution MS experiences.     

New lignan glycosides from Glehnia littoralis

From the roots ethanol extract of Glehnia littoralis, two new lignan glycosides, named glehlinoside E （1） and F （2）, were obtained. Their structures were determined to be （-）-secoisolariciresinol 4-O-β-D-（6-O-feruloyl） glucopyranoside （1） and （-）- secoisolariciresinol 4-O-f-β-D-（6-O-caffeloyl） glucopyranoside （2） by analysis of their spectral data, respectively.     

Phenolic compounds from the aqueous extract of Acacia catechu

From the aqueous extract of Acacia catechu,two new phenolic compounds(3R,4R)-3-(3,4-dihydroxyphenyl)-4-hydroxycy-clohexanone (1) and(4R)-5-(1-(3,4-dihydrophenyl)-3-oxobutyl)-dihydrofuran-2(3H)-one(2) were obtained.Their structures were determined on the basis of spectroscopic analysis.Free-radical scavenging activities of them were evaluated.     

五味子中木脂素类成分的高效液相色谱-电喷雾质谱研究

采用液相色谱-电喷雾质谱联用(HPLC-ESI-MSⁿ)技术, 对北五味子与南五味子中木脂素类成分进行了系统研究. 通过HPLC-ESI-MS技术, 获得了相应化合物的保留时间、紫外光谱和分子量等信息, 利用电喷雾多级串联质谱技术(ESI-MSⁿ), 获得了相应化合物的结构信息. 研究结果表明, 北五味子与南五味子的主要木脂素成分除5个共有成分外其它成分差异较大, 并且其共有成分含量差别较大. 在此基础上, 建立了简便、快速的北五味子与南五味子药材分析鉴定的新方法.     

Triterpene Glycosides from Cussonia paniculata. I. Isolation and Structure Determination of Glycosides A, B1, B2, C, D, G2, H1, and H2 from Leaves of Cussonia paniculata

The 3-O-β-D-glucopyranoside of β-sitosterol (1) and the known triterpene glycosides 3-O-α-L-arabinopyranosides of oleanolic (2a) and ursolic (2b) acids and hederagenin (3), 3-O-β-D-glucopyranosyl-(1→2)-α-L-arabinopyranosideofoleanolic acid (4), 3-O-α-L-arabinopyranosyl-28-O-α-L-rhamnopyranosyl-(1→4)-O-β-D-glucopyranosyl-(1→6)-O-β-D-glucopyranosides of oleanolic (5a) and ursolic (5b) acids and the newglycoside 28-O-α-L-rhamnopyranosyl-(1→4)-O-β-D-glucopyranosyl-(1→6)-O-β-D-glucopyranoside of 23-hydroxyursolic acid (6) were isolated from leaves of Cussonia paniculata (Araliaceae). Their structures were established using chemical methods and NMR spectroscopy.__________Translated from Khimiya Prirodnykh Soedinenii, No. 2, pp. 160–163, March–April, 2005.     

Determination of volatile compounds in foliage of Fraser fir (Abies fraseri) and balsam fir (Abies balsamea)

The Fraser fir (Abies fraseri) and balsam fir (Abies balsamea) are eastern North American conifers which have been infested by an exotic insect, the balsam woolly adelgid (BWA). BWA infestation has had particularly severe effects on Fraser fir, with up to 95% mortality rates at some sites, and is characterized by attack on mature trees only. The purpose of this research was to perform a chemosystematic study to evaluate whether differences in volatile chemical concentrations of various stands of fir were observed as a function of resistance to BWA infestation. The concentrations of volatiles were determined by a methylene chloride extraction procedure, followed by analysis by gas chromatography. First, comparisons were made of concentration levels of volatiles in Fraser and balsam fir foliage of seedlings, saplings, and mature trees. If a chemical provided resistance, one would expect higher volatile levels in the balsam foliage because of its greater resistance to BWA. Second, the volatile levels in Fraser fir saplings and mature trees at uninfested sites were compared to the levels in surviving Fraser fir saplings and mature trees at infested sites. For a compound that provided BWA-resistance, higher volatile levels would be expected at the infested site because of the greater resistance of the surviving trees. Lastly, the concentrations of volatiles in sapling foliage were compared to those in mature foliage, where higher levels of resistance-providing chemicals would be expected in the saplings. 3-Carene was shown to consistently follow the expected pattern for a compound that provides resistance against BWA and β-pinene followed the pattern for the majority of the comparisons. These results indicate that while maltol and total volatiles did not correlate with the expected pattern, 3-carene, and possibly β-pinene and sesquiterpenes may provide fir with defense against BWA infestation.     

Phytoconstituents from the rhizomes of Curcuma aromatica Salisb.

Phytochemical investigation of the chloroform extract of the rhizomes of Curcuma aromatica Salisb. (Zingiberaceae) yielded three new phytoconstituents characterized as n-heneitriacontan-14-one; n-pentatriacontan-5-one; 11α-cyclopentyl-n-decan-1-ol (curcumapentadecanol) along with the known compounds stigmasterol and n-nonacosan-1-ol. The structures of these phytoconstituents have been elucidated on the basis of structural data analysis and chemical reactions.     

Polysaccharide differences between planktonic and biofilm-associated EPS from Pseudomonas fluorescens B52

The polysaccharides associated with free (planktonic) and surface-attached (biofilm) cells from cultures of Pseudomonas fluorescens strain B52 were compared. Variations in the attached matrix due to surface material (glass or stainless steel) were also analyzed. Two digestion methods were used to optimize the recoveries of sugars, uronic acids and acidic substituents. The yield of analyzable material after digestion reached 90% for the material associated to the biofilms, though only 20–30% for that bound to planktonic cells. The polysaccharide(s) in the biofilm had glucuronic and guluronic acids as main components, besides rhamnose, glucose and glucosamine. The proportion of glucuronic to guluronic acid was higher in the polysaccharide(s) found in biofilms formed on stainless steel than in those on glass.