Mass spectrometry in the investigation of β-lysine-containing peptides

Mass spectrometry can be used for amino acid sequence determination in β-lysine-containing peptides and for the identification of α- and β-lysine residues in peptides, as well as for amide bond type determination in β-lysine peptides. The peptide bond in streptothricin D is shown to be formed through the participation of an ε-amino group of the L-β-lysine residue.     

Multichain copoly(α-amino acid). I. Multichain copoly(α-amino acid) prepared by reaction of copoly(L-lysine γ-methyl-L-glutamate) with N-carboxy anhydride of Nϵ-carbobenzyloxy-L-lysine

Polymerization of the N-carboxy anhydride of N^?-carbobenzyloxy-L -lysine in the presence of multifunctional polymeric initiator, copoly(L -lysine γ-methyl-L -glutamate) was studied in N,N-dimethylformamide containing 3% (v/v) of dimethyl sulfoxide. Multichain copoly(α-amino acid), i.e., multi-N^?-poly(N^?-carbobenzyloxy-L -lysine)copoly(L -lysine γ-methyl-L -glutamate), was obtained with linear poly(N^?-carbobenzyloxy-L -lysine) as by-product that could be removed by reprecipitation as was evidenced by gel-permeation chromatography. The degree of polymerization of the branch polymer chains estimated by the osmometric molecular weight determination and amino acid analysis was between 20 and 60, which decreased with increasing lysine content of the polymeric initiator. The stability of α-helical conformation of the multichain copoly(α-amino acid) was studied in the chloroform–dichloroacetic acid system at 25°C by the ORD technique. The α-helical conformation of poly(N^?-carbobenzyloxy-L -lysine) branches was less stable than those of linear poly(N^?-carbobenzyloxy-L -lysine) and the core molecular chains of the multichain copoly(α-amino acid).     

Near‐monodisperse α‐hydroxy and α,ω‐dihydroxy amine‐based polymers: Synthesis and characterization

α‐Hydroxy and α,ω‐dihydroxy polymers of 2‐(dimethylamino)ethyl methacrylate (DMAEMA) of various molecular weights were synthesized by group transfer polymerization (GTP) in tetrahydrofuran (THF), using 1‐methoxy‐1‐(trimethylsiloxy)‐2‐methyl propene (MTS) as the initiator and tetrabutylammonium bibenzoate (TBABB) as the catalyst. The hydroxyl groups were introduced by adding one 2‐(trimethylsiloxy) ethyl methacrylate (TMSEMA) unit at one or at both ends of the polymer chain. The ends were converted to 2‐hydroxyethyl methacrylate (HEMA) units after the polymerization by acid‐catalyzed hydrolysis. Gel permeation chromatography (GPC) in THF and proton nuclear magnetic resonance (¹H‐NMR) spectroscopy in CDCl₃ were used to determine the molecular weight and composition of the polymers. These mono‐ and difunctional methacrylate polymers can be covalently linked at the hydroxy termini to form star polymers and model networks, respectively. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 1597–1607, 1999     

The influence of short branches on the α, β and γ-relaxation processes of ultra-high strength polyethylene fibers

Dynamic mechanical measurements were conducted for several kinds of ultra–high-strength polyethylene fibers with different methyl branch contents. As is the case with conventional polyethylene materials, UHSPE fibers also exhibit α, β, and γ-relaxation dispersions. Each relaxation process is the function of both the tensile moduli and the branch contents of UHSPE fibers. It was also found that the γ-process of UHSPE fibers is dominated mainly by the localized molecular motion in the crystalline part, such as a dislocation mode of crystallite defects, which is very sensitive to the branching content. From the time and temperature superposition of the frequency dispersion experiments, it was found that activation energies for both the α2-process and α3-process increase proportionally to the methyl branch content, while the α1-process is not so affected by the branch content. This result shows that the incorporated branch sites in the crystalline part effectively hinder the chain-to-chain slippage; meanwhile, they have not hindered the slippage at the grain boundary so far, which also enables us to explain the creep improvement of UHSPE fibers through branch incorporation with the same mechanism. © 1994 John Wiley & Sons, Inc.     

Interplay of α,α‐ versus α,β‐Conjugation in the Excited States and Charged Defects of Branched Oligothiophenes as Models for Dendrimeric Materials

This article investigates the excited and charged states of three branched oligothiophenes with methyl–thienyl side groups as models to promote 3D arrangements. A comparison with the properties of the parent systems, linear all‐α,α‐oligothiophenes, is proposed. A wide variety of spectroscopic methods (i.e., absorption, emission, triplet–triplet transient absorption, and spectroelectrochemistry) in combination with DFT calculations have been used for this purpose. Whereas the absorption spectra are slightly blueshifted upon branching, both the emission spectra and triplet–triplet absorption spectra are moderately redshifted; this indicates a larger contribution of the β‐linked thienyl groups in the delocalization of the S₁ and T₁ states rather than into the S₀ state. The delocalization through the α,β‐conjugated path was found to be crucial for the stabilization of the trication species in the larger branched systems, whereas the linear sexithiophene homologue can only be stabilized up to the dication species.     

Stereoregularity of poly(alkyl α-chloroacrylates) and mechanism of isotactic polymerization

The catalytic activity of the complexes prepared by the reaction of Grignard reagents with ketones, esters, and an epoxide as polymerization catalysts of methyl and ethyl α-chloroacrylates was investigated. The modifiers which gave isotactic polymers were α,β-unsaturated ketones such as benzalacetophenone, benzalacetone, dibenzalacetone, mesityl oxide, and methyl vinyl ketone, and α,β-unsaturated esters such as ethyl cinnamate, ethyl crotonate, and methyl acrylate. Catalysts with butyl ethyl ketone, propiophenone, and propylene oxide as modifiers produced atactic polymers but no isotactic polymers. It was revealed that the complex catalysts having a structure ? C?C? O? MgX (X is halogen) gave isotactic polymers. The mechanism of isotactic polymerization was discussed. In addition, for radical polymerization of ethyl α-chloroacrylate, enthalpy and entropy differences between isotactic and syndiotactic additions were calculated to give ΔH_i^* ? ΔH_s^* = 910 cal/mole and ΔS_i^* ? ΔS_s^* = 0.82 eu.     

Reactions of 3‐methylamino‐5‐phenylthiophene with α,β‐unsaturated esters and α,β‐unsaturated nitriles

Treatment of 3‐methylamino‐5‐phenylthiophene with α,β‐unsaturated esters, i.e., methyl acrylate, (E)‐methyl crotonate, diethyl fumarate, diethyl maleate and ethyl propiolate, in tetrahydrofuran for several days at reflux gave 1‐methyl‐3,4‐dihydrothieno[2,3‐e]pyridin‐2‐ones 4 and/or 1‐methylthieno[2,3‐e]pyridin‐2‐ones 5 , depending on the structure of the esters. On the other hand, the same reactions with α,β‐unsaturated nitriles such as acrylonitrile and tetracyanoethene, gave the corresponding thiophenes 7 and 10 bearing 2‐cyanoethyl and 1,2,2‐tricyanoethenyl groups at C‐2, respectively. The reaction with (Z)‐1,2‐dicyanoethene under the same conditions produced the corresponding thiophene 9 bearing the 1,2‐dicyanoethenyl group and 1,2‐dicyano‐5‐methylaminobiphenyl.     

Effect of tin tetrachloride on thermal decompositions of α,α′-azobisisobutyronitrile and dimethyl α,α′-azobisisobutyrate

Thermal decomposition of α,α′-azobisisobutyronitrile (AIBN) and dimethyl α,α′-azobisisobutyrate (MAIB) in the presence of a large amount of tin tetrachloride was investigated to determine the effect of complex formation on the decomposition rates and yields of the recombination products. The addition of tin tetrachloride significantly increased the decomposition rates; the observed first-order rate constant increased by factors of 4.5 and 17 at molar ratios of [SnCl₄]/[AIBN] = 21.65 and [SnCl₄]/[MAIB] = 19.53, respectively. It was found that the decomposition of these azo compounds was also accelerated by the addition of a comparable amount of donor solvent such as ethyl acetate or propionitrile to tin tetrachloride and that the enhancement in rate was accounted for by a larger frequency factor in the Arrhenius equation. Furthermore, the addition of tin tetrachloride seemed to suppress the formation of recombination products, tetramethyl succinonitrile and dimethyl tetramethylsuccinate, of the radicals produced by decomposition.     

Multichain copoly(α-amino acid). II. Preparation and properties of multi-Nϵ-poly(γ-benzyl-L-glutamyl)copoly(L-lysine γ-methyl-L-glutamate)

A number of multi-N^?-poly(γ-benzyl-L -glutamyl)copoly(L -lysine γ-methyl-L -glutamate)s with branches having various degrees of polymerization and with various intervals of the grafting sites in the core molecule were prepared in N,N-dimethylformamide containing dimethyl sulfoxide by the reaction of N-carboxy anhydride of γ-benzyl L -glutamate with random copoly(L -lysine γ-methyl-L -glutamate)s of different composition with various anhydride-initiator ratios. The relationship between the intrinsic viscosity measured in a coil solvent, dichloroacetic acid (DCA), and the number-average molecular weight determined by osmometry was found to be expressed by the Mark–Houwink–Sakurada equation for the multichain copoly(α-amino acid)s which were made from the same polymeric initiator. The observed α values of the multichain copoly(α-amino acid)s in the equation were lower than that of linear poly(γ-benzyl-L -glutamate). The solvent induced helix–coil transition of the multichain copolymer was investigated in the chloroform?DCA system by the ORD technique. Two kinds of transition regions were clearly distinguished: The α-helices of the core molecules underwent the transition at lower DCA concentration and those of the branch chains at higher DCA concentration. The reduced viscosity of the multichain copoly-(α-amino acid) increased slightly between the two transition regions, in contrast to the large decrease in the reduced viscosity of linear poly(γ-benzyl-L -glutamate) during the helix–coil transition.     

Poly(alkyl α-chloroacrylates). V. Preparation and properties of methyl,ethyl, and isopropyl polymers of varied tacticity

Polymers of different tacticities, from highly isotactic to highly syndiotactic, were prepared from methyl, ethyl, and isopropyl α-chloroacrylates. These polymers were characterized for tacticity by infrared spectroscopy and 100 and 300 MHz nuclear magnetic resonance (NMR) and for thermal properties by differential scanning calorimetry (DSC). After corrections were made for molecular weight effects, the observed glass temperature-tacticity results were analyzed, and it was determined that the maximum differences in glass temperatures of the purely isotactic compared to the purely syndiotactic polymers should be 92°C for the methyl ester, 86°C for the ethyl ester, and 68°C for the isopropyl ester polymers. The highly isotactic polymers of all three esters were crystalline. Possible polymerization reaction mechanisms are discussed on the basis of the triad and tetrad tacticity values observed and the calculated propagation statistics.     

Stereocomplex formation between enantiomeric poly(α‐methyl‐α‐ethyl‐β‐propiolactones): Effect of molecular weight

Optically pure S(?) and R(+)‐poly(α‐methyl‐α‐ethyl‐β‐propiolactones) (PMEPLs) of controlled low molecular weights were synthesized by anionic polymerization of the corresponding optically active monomers, and characterized using gel permeation chromatography, Maldi‐TOF mass spectrometry, and NMR spectroscopy. Blends of PMEPLs of opposite configurations and different molecular weights were investigated. All blends lead to the formation of a stereocomplex and its crystallization prevails over a wide range of mixing ratios. The stereocomplex melts 30–40 °C above that of the corresponding pure polymers, depending on the molecular weight; pairs of polymers having similar molecular weights exhibit the highest melting temperatures and enthalpies of fusion. Finally, when the stereocomplex is dispersed in a PMEPL matrix, it acts as a very effective nucleation agent for the crystallization of the polymer in excess. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 2380–2389, 2007     

A meso–meso β‐β β‐β Triply Linked Subporphyrin Dimer

A meso–meso β‐β β‐β triply linked subporphyrin dimer 6 was synthesized by stepwise reductive elimination of β‐to‐β doubly Pt^II‐bridged subporphyrin dimer 9 . Dimer 6 was characterized by spectroscopic and electrochemical measurements, theoretical calculations, and picosecond time‐resolved transient absorption spectroscopy. X‐ray diffraction analysis reveals that 6 has a bowl‐shaped structure with a positive Gaussian curvature. Despite the curved structure, 6 exhibits a remarkably red‐shifted absorption band at 942 nm and a small electrochemical HOMO–LUMO gap (1.35 eV), indicating an effectively conjugated π‐electronic network.     

Poly(alkyl α-chloroacrylates). IV. Tacticity analysis from 300 MHz proton magnetic resonance spectra

300 MHz proton magnetic resonance spectroscopy was applied to the determination of triad structures of three poly(alkyl α-chloroacrylates) of widely varying stereoregularities. Assignments and quantitative analyses were made for all of the tetrad peaks in the backbone methylene resonance of poly(methyl α-chloroacrylate), poly(ethyl α-chloroacrylate), and poly(isopropyl α-chloroacrylate). In addition the methyl singlet peaks of poly(methyl α-chloroacrylate), the methyl triplet peaks of poly(ethyl α-chloroacrylate) which had not been amenable previously to resolution at 220 MHz, and the methyl doublet peaks of poly(isopropyl α-chloroacrylate) were resolved, and the triad values which were obtained from these pendant ester group resonances compared favorably with triad values calculated from experimental tetrad values. As a demonstration of the internal agreement of the triad and tetrad peaks assignments, statistical calculations of the stereochemical structures of the actic and syndiotactic polymers were generally described well or to a first approximation by random selection statistics (Bernoullian) while the stereochemical statistics of the moderately to highly isotactic polymers were consistent with a nonrandom statistical process (first-order Markovian), as expected.     

Poly(γ-alkyl glutamates). I

Good yields of some crystalline γ-alkyl esters of L -glutamic acid were obtained by carrying out the esterfication with a small (20–50 mole-%) excess of alcohol in aqueous hydrochloric acid or 60–80% sulfuric acid followed by neutralization with an alkaline solution. This new method made it possible to synthesize various γ-alkyl L -glutamates, including those higher than ethyl, and consequently, various poly(γ-alkyl L -glutamates) such as methyl, ethyl, n-propyl, n-butyl, isobutyl, and isoamyl. The conformation of these poly-L -glutamates in the solid state was determined by the infrared absorption method. The molecular motions of the polymers of γ-methyl, -ethyl, -n-propyl, -n-butyl, and-isoamyl L -glutamates and poly(γ-methyl-D -glutamate) in the solid state were studied by NMR, and dielectric and mechanical measurements. At temperatures up to 400°K., the NMR spectra of poly(γ-methyl D -glutamate) can be explained only by rotational motion of the side chain. Also, from NMR results, rotational motion of C?O groups in the side chain of poly(γ-methyl D -glutamate) is expected near room temperature, and such a motion was examined by dielectric measurements. Rotation of C?O groups in the side chains of polymers of γ-methyl, γ-ethyl, γ-n-propyl, γ-n-butyl, and γ-isoamyl L -glutamate was also observed near room temperature by dielectric measurements in the frequency range from 10² to 10⁶ cps. Activation energies obtained by dielectric and mechanical measurements were similar to those for the side chain motions of the corresponding esters of poly(methacrylic acid). Although it has been noted that the molecular motion of poly(γ-benzyl L -glutamate) in the solid state at room temperature may be related to the motion of its back bone, the molecular motion in these poly-L -glutamates at these temperatures can be explained only in terms of side-chain rotation.     

α-Distonic ions as transient species in the reactions of metastable alkyl benzoate radical cations

The key intermediates to the fragmentation of metastable methyl and ethyl benzoate radical cations are α- and β-distonic isomers of the molecular ions. The α-distocic isomers are also formed by fragmentation of longer chain alkyl benzoates, but may not be long-lived, stable species. Rearrangement of the α-distonic ions prior to fragmentation can take place, but (re)formation of the benzoate molecular ions does not occur.     

Multichain copoly(α-amino acid). III. Multichain copoly(α-amino acid) prepared by the reaction of copoly(L-lysine γ-methyl-L-glutamate) with N-carboxy anhydride of β-benzyl L-aspartate

Graft copolymerization of N-carboxy anhydride of β-benzyl-L -aspartate onto copoly(L -lysine γ-methyl-L -glutamate) was carried out in N,N-dimethylformaide which contained 3 v/v% of dimethyl sulfoxide to obtain multi-N^ε-poly(β-benzyl-L -aspartyl)copoly(L -lysine γ-methyl-L gluta mate). The degree of polymerization of the branch chain attained was much influenced by the interval of the grafting sites of the copoly(L -lysine γ-methyl-L -glutamate). The solvent-induced two-step conformational transition of the multichain copoly(α-amino acid) was observed in the chloroform-dichloroacetic acid system at 25°C by the ORD technique. The stability of the α-helical conformation of the backbone polymer chain was decreased by the presence of poly(β-benzyl-L -aspartyl) branch chains that could form unstable α-helical conformations of opposite spirals.     

Radical copolymerization of maleimide with ethyl α‐ethylacrylate and α‐ethylacrylic acid via RAFT

The copolymerization of maleimide (MI) with α‐ethylacrylic acid (EAA) and with ethyl α‐ethylacrylate (EEA) in the presence of 2‐phenylprop‐2‐yl dithiobenzoate (PPDB) was investigated. The copolymerization of MI and EAA was difficult to conduct with the reversible addition–fragmentation chain transfer (RAFT) mechanism because reinitiation of expelled radicals by fragmentation chain transfer was inhibited by the association of EAA in polar solvent and the strong interaction of the imino of MI with the carboxyl of EAA between the propagation chains. When the carboxylic group of EAA was esterified, then the copolymerization went well via RAFT, and alternating copolymers with controlled molecular weight were obtained. Combining by electron spin resonance showed a different result. It was found that before 30% of the comonomer conversion had occurred, the copolymer poly(EEA‐co‐MI) showed increasing molecular weight with the conversion and a rather narrow molecular weight distribution; then the molecular weight of the copolymer began to retard. This phenomenon of retardation was aggravated at high temperature. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 3828–3835, 2004     

Absolute Konfiguration von α-Zeacarotin, α-Apo-8-carotinal und α-Apo-8-carotinol

α-Zeacarotene, isolated from corn gluten, has been shown to have the same absolute configuration at C(6) as natural (+)-α-carotene. Chiroptical comparison was made with the derived α-apo-8-carotenole. The same chirality has been found with δ-, ε-carotene, lutein, semi-α-carotenone, zeinoxanthin, crocoxanthin and β,ε-carotene-2-ol. Therefore, biological cyclisation of the acyclic precursor to the α-ionone ring seems to be stereospecific and is probably different (enantiomeric) to that leading to β-ionone derivatives. Cotton effects of carotenoids have for the first time been measured in the visible region. All carotenoids examined with C(6)-R-chirality show a positive effect at their longest absorption band.     

Über einen neuartigen synthetischen Zugang zu β,γ-ungesättigten α-Aminocarbonsäuren

A New Synthetic Route to β,α-Unsaturated α-Amino Acids A versatile new synthetic pathway for the preparation of βγ-unsaturated α-amino acids ( 1 ) is presented. Cu(I)-catalyzed addition of ethyl isocyanoacetate ( 2 ) to α-chloro carbonyl compounds ( 3 ) gives 5-chloroalkyl-2-oxazolin-4-carboxylates ( 4 ) in high yields. A reductive elimination on 4 by means of zinc yields the N-formyl derivatives of βγ-unsaturated α-amino carboxylates ( 5 ), which on acid hydrolysis lead to the free amino acids 1 . The five different βγ-dehydro-α-amono acids 1b-1f have been prepared by this method.     

The use of α-(aryl)-4-morpholineacetonitriles (masked acyl anion equivalents) in 1,4-additions to α,β-unsaturated esters and nitriles. A versatile synthetic route to 6-aryl-3(2H) pyridazinones

The use of α-(substituted-phenyl)-4-morpholineacetonitriles in 1,4-additions to ethyl acrylate, ethyl crotonate, methyl α-methylacrylate, acrylonitrile, methylacrylonitrile, crotononitrile and cinnamonitrile was studied. A convenient route to 6-aryl-4,5-dihydro-3(2H) pyridazinones from aryl aldehydes and heterocyclic aldehydes was developed.