Substituent effects in second row molecules : Silicon-containing compounds

Substituent interaction energies are calculated by ab initio molecular orbital methods for the two series SiH₂X^- and SiH₃X for the directly bound substituents X = BH₂, CH₃, NH₂, OH, F and the results compared with those for the corresponding first row species. Interactions with the groups NH₂, OH, F are as large in the neutral as in the anionic series and this is attributed to the presence of important π-bonding interactions, supplementing the effects of inductive withdrawal of σ-electrons. The restoration of charge neutrality by π-donation to silicon is more important in the neutral molecules, σ-electron transfer from silicon in the anions. π-Bonding with the π-acceptor substitutent BH₂ is favourable, as it is in the CH₃X and CH₂X^- systems, but with π-donor substituents the interactions are always destabilizing.     

Basis set and correlation effects on geometry of octahedral second-row transition-metal complexes

An extensive investigation of the basis-set effect on the predicted geometry of the redox pair [Ru(NH₃)₆]^2+/3+ is presented. Basis sets where the core electrons have been replaced with a relativistic core potential as well as all-electron basis sets were tested. Best agreement with observations was obtained with the all-electron basis set MIDI augmented with a set of f-type polarization functions on the metal center. Other properties such as the vibration spectrum, the relative energy of the high-spin and low-spin states, and geometry changes upon oxidation/reduction of the central metal are discussed. The importance of electron correlation on the predicted geometry was estimated at the MP2, MP3, MP4(SDQ), CCSD, and CCSD(T) levels of theory. The MIDI(f) basis set is then used for other octahedral second-row transition-metal complexes and some other related complexes. The electronic spectrum of [Ru(NH₃)₆]²⁺ is also calculated using two different CI computational schemes. Surprisingly good agreement between the predicted electronic spectrum and the observed spectrum are obtained using one of the CI computational schemes. © 1996 John Wiley & Sons, Inc.     

Substituent effects in second row molecules: Molecular orbital studies of phosphorus(III) compounds

Substituent effects in directly bonded P(III) compounds are investigated by ab initio MO calculations of relative energies and the results compared with those for the corresponding nitrogen species. The investigation covers substitution by X = BH₂, CH₃, NH₂, OH, F in PHX^-, PH₂X, and PH₃X⁺ series molecules with some attention also to PX₃ and PX₃H⁺ species. Except for compounds containing the π-acceptor substituent BH₂, σ-interactions dominate substitution behaviour but the second row species tolerate electron withdrawal better than their first row analogues, the severe destabilization of NH₂X and NH₃X⁺ by σ-electron withdrawal being absent from PH₂X and PH₃X⁺. In contrast to the σ-withdrawing NH₂ group, the PH₂ group is characterized as a mild σ-donor. PH^- is a σ-donor and PH⁺₃ a σ-acceptor. π-Bonding to the second row atom is an important means of maintaining electroneutrality in the PH₃X⁺ series, where dπ functions have a bigger role than pπ functions.     

Substituent effects in second row molecules : Sulfur(II) compounds

Substituent effects arising from directly bonded groups in sulfur-containing compounds are investigated by molecular orbital calculations of relative energies. Interaction energies, basicities and acidities are obtained from calculations at the supplemented 4–3 IG and 6–3 IG basis set levels for substitution in the three series of sulfur compounds SX^-, SHX, and SH₂X⁺ with X = BH₂, CH₃, NH₂, OH, F and in the bisubstituted series SX₂ (X = CH₃, F). Donor-acceptor interactions are dominated by the σ-electrons and readily account for the data; substitution by BH₂ is an exception, requiring consideration of π-bonding, especially in the anion. Charge transfer, both to and from the second row element, is better tolerated by the sulfur-containing systems than by the corresponding oxygen compounds.     

Basis set and method dependence in quantum theory of atoms in molecules calculations for covalent bonds

The influence of various small- and medium-size basis sets used in Hartree-Fock (HF) and density functional theory (DFT)/B3LYP calculations on results of quantum theory of atoms in molecules based (QTAIM-based) analysis of bond parameters is investigated for several single, double, and triple covalent bonds. It is shown that, in general, HF and DFT/B3LYP methods give very similar QTAIM results with respect to the basis set. The smallest 6-31G basis set and DZ-quality basis sets of Dunning type lead to poor results in comparison to those obtained by the most reliable aug-cc-pVTZ. On the contrary, 6-311++G(2df,2pd) and in a somewhat lesser extent 6-311++G(3df,3pd) basis sets give satisfactory values of QTAIM parameters. It is also demonstrated that QTAIM calculations may be sensitive for the method and basis set in the case of multiple and more polarized bonds.     

Electron transport through single conjugated organic molecules: basis set effects in ab initio calculations

We investigate electron transport through single conjugated molecules--including benzenedithiol, oligophenylene ethynylenes of different lengths, and a ferrocene-containing molecule sandwiched between two gold electrodes with different contact structures--by using a single-particle Green function method combined with density functional theory calculation. We focus on the effect of the basis set in the ab initio calculation. It is shown that the position of the Fermi energy in the transport gap is sensitive to the molecule-lead charge transfer which is affected by the size of basis set. This can dramatically change, by orders of magnitude, the conductance for long molecules, though the effect is only minor for short ones. A resonance around the Fermi energy tends to pin the position of the Fermi energy and suppress this effect. The result is discussed in comparison with experimental data.     

Simultaneous microdetermination of sulfur and phosphorus in organic compounds

A simple method for the simultaneous determination of sulfur and phosphorus in 3–8 mg organic sample is presented. Following oxidative combustion by the oxygen flask method, sulfate is precipitated by addition of a known amount of Ba(II) and the excess of the latter is measured polarographically. After filtration, the quinoline phosphomolybdate method is used to precipitate phosphate; the unreacted Mo(VI) is determined polarographically. The mean relative error for 13 determinations was 2.99% for S and 4.07% for P; the mean relative standard deviation was 1.43 and 4.19%, respectively.     

Basis set effects and the choice of reference geometry in ab initio calculations of vibrational spectra

Tatewaki and Huzinaga's [J. Comput. Chem. 1 , 205 (1980)] basis sets, constructed to minimize superposition error, were used to calculate infrared (IR) frequencies and intensities. They were found inferior to Pople bases such as 3–21G and 6–31G*. The question of whether a theoretical vibrational spectrum should be computed at experimental or theoretical bond lengths was also investigated. If the magnitude of the correlation energy increases with bond length, Hartree-Fock bond lengths are expected to be shorter than experimental, and frequencies computed there will be higher than those computed at experimental lengths. Conversely, if this magnitude decreases with R, computed lengths should be longer than experimental and should give lower computed frequencies.     

Substituent effects of nitro group in cyclic compounds

Structural Chemistry - Numerous studies on nitro group properties are associated with its high electron-withdrawing ability, by means of both resonance and inductive effect. The substituent effect...     

Substituent effects of phosphorus and arsenic containing groups in aromatic substitution—II : Nitration of benzylphosphonic acid and related compounds

The reactivities of benzylphosphonic acid (protonated and unprotonated) and β-phenylethylphosphonic acid have been determined for nitration. The highly selective para/ortho orientation has been confirmed. The relative reactivities of systems PhX and PhCH₂X for some substituents are discussed.     

Simultaneous spectrophotometric microdetermination of sulfur and phosphorus in organic compounds

A method is described for the simultaneous spectrophotometric microdetermination of sulfur and phosphorus in organic compounds. The interference of phosphorus in the determination of sulfur is avoided using a suitably modified barium chloranilate method. The samples analyzed include some pesticides and mixtures of organosulfur and organophosphorus compounds. The error does not exceed ±0.5% unlike the one reported in the earlier method.     

Iodometric microdetermination of phosphorus,sulfur and chlorine in organic compounds

Summary A method is presented for the determination of phosphorus, sulfur and chlorine in organic compounds in absence of nitrogen by iodometry. The titration is carried out in 50% acetone solution in order to eliminate the interference of hydrogen peroxide.

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Zusammenfassung Ein Verfahren zur jodometrischen Bestimmung von Phosphor, Schwefel und Chlor in stickstofffreien organischen Verbindungen wurde vorgeschlagen. Die Titration erfolgt in 50% acetonischer Lösung, um die Störung durch Wasserstoffperoxid auszuschalten.

     

Basis set dependence of phosphate frequencies in density functional theory calculations

The addition of extravalence, polarization and diffuse functions, were studied in order to conclude how they affect the P? O stretching frequencies of several biological relevant phosphate molecules. The results show that the polarization and the diffuse functions have opposite effects on the frequencies: the polarization functions downshift while the diffuse functions upshift the frequencies. The effect of the valence functions was more difficult to interpret. The effect of the conductor‐like screening model (CPCM)‐continuum model was also studied. The results show that the CPCM‐continuum model has a substantial effect on the frequencies for these small molecules. The continuum model's efficiency is mainly due to its effect on the geometries and not on the frequencies. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Catalytic synthesis of sulfur and phosphorus compounds via atom-economic reactions

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Basis set and density functional dependence of vibrational Raman optical activity calculations

We present an extensive investigation of the dependence of the scattering intensity difference of right and left circularly polarized light observed in vibrational Raman optical activity (VROA) on the choice of basis set and exchange-correlation functional. These dependencies are investigated for five molecules for which accurate experimental data are available: (S)-methyloxirane, (R)-epichlorhydrin, (S)-glycidol, (M)-spiro[2,2]pentane-1,4-diene, and (M)-sigma-[4]-helicene. Calculations are presented using the SVWN exchange-correlation functional (LDA), the BLYP exchange-correlation functional, and the B3LYP hybrid functional, using six different basis sets: the cc-pVDZ, cc-pVTZ, aug-cc-pVDZ, aug-cc-pVTZ, Sadlej's polarized basis set, and a minimal VROA basis set recently proposed by Zuber and Hug. It is demonstrated that results from pure gradient-corrected and hybrid functionals are comparable and that the aug-cc-pVDZ and aug-cc-pVTZ basis sets yield similar results. Furthermore, the combination of the small basis set by Zuber and Hug with an accurate force field represents the best compromise between computational accuracy and computational efficiency.     

Electrophilic heterocyclization of unsaturated sulfur and phosphorus compounds (review)

The literature on the electrophilic heterocyclization of unsaturated sulfur and phosphorus compounds has been reviewed. The factors influencing the reactivity of unsaturated compounds in such reactions are discussed, and data on the stereo-chemistry of the addition are presented.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 291–302, March, 1986.     

Structure and properties of transition-metal compounds. A systematic study of basis set effects in ab initioSCF calculations

The recently developed Gaussian basis functions [2] were used in calculations on the ground electronic states of molecules containing transition-metal atoms: ScF₃, TiCl₄, ZrCl₄, Cr(CO)₆, Ni(CO)₄, CuF, CuCl, Zn(CH₃)₂, and Cd(CH₃)₂. The usefulness of minimal basis sets, the importance of splitting of the valence part of the minimal basis sets, the role of the triple splitting of the d-block functions, and the need for p-, d-, and f-type polarization functions were discussed in the context of the geometrical structure and the firstorder electronic properties of the transition-metal atom compounds.     

Reactivity of electron-poor decamethyl-1,3-diboraruthenocene with sulfur and phosphorus compounds

Decamethyl-1,3-diboraruthenocene [(η⁵-C₅Me₅)Ru{η⁵-(CMe)₃(BMe)₂}] (1) reacts with cyclo-octasulfur in hexane to give [(η⁵-C₅Me₅){η⁵-(CMe)₃(BMe)₂}RuS] (3), which may also be obtained from 1 and propylene sulfide. 1 reacts with H₂S to form the ruthenathiacarboranyl complex [(η⁵-C₅Me₅)Ru{η⁴-(CMe)₃(BMe)₂S}] (6), for which a nido-structure is proposed. The isomeric compounds 3 and 6 have different stabilities: 3 loses sulfur and unexpectedly the closo-cluster [(η⁵-C₅Me₅)₂Ru₂H(CMe)₃(BMe)₂] (4) is formed with hydrogen bridging the basal and apical Ru centers. Reaction of 1 with carbonylsulfide (COS) yields the dinuclear ruthenium compound [(η⁵-C₅Me₅)Ru{η⁵-(CMe)₃(BMe)₂(S)(COBMe)}]₂ (7) in which two B-O groups bridge two ruthenium complexes. Its formation results from a complex reaction sequence: sulfur inserts into the diborolyl ring and the ligand CO forms an oxygen-boron bridge to a second molecule, followed by insertion of the carbonyl carbon into the double bond of the diboraheterocycle. Carbon disulfide reacts with 1 to give the dinuclear complex 8 with two CS₂ molecules connecting the ruthenium centers. When 1 and P₄ are heated in toluene, the sandwich 9 is obtained by formal insertion of a P-H group into the diborolyl ring of 1 and the triple-decker [{η⁵-(C₅Me₅)Ru}₂{μ-(MeC)₃P(MeB)₂} (10) is detected in the mass spectrum. The phosphaalkyne PCtBu inserts into 1 to give the ruthenaphosphacarborane [(η⁵-C₅Me₅)Ru{(CMe)₂(BMe)(PCtBu)(CMe)(BMe)}] (11) in high yield. Phosphanes react with 1 to give weak donor-acceptor complexes 1 · PH₂R (12) (R=Ph, H). The compositions of the compounds are deduced from spectroscopic and analytical data and are confirmed for 4 and 7 by X-ray structural analyses.     

Substituent interaction effects in aromatic molecules in RP-HPLC with acetonitrile-water and tetrahydrofuran-water eluents

Summary Retention volumes of monosubstituted benzenes, benzoic acids, phenols and anilines have been measured in reversed-phase liquid chromatography. Buffered acetonitrile-water and tetrahydrofuran-water eluents were used with an octadecylsilylsilica adsorbent. From the net retention volumes a substituent interaction effect was calculated and described with the linear free energy relationship developed by Taft. The positive sign of the values of the -parameters, figuring in this relationship, was interpreted in terms of hydrogen bonding between the solutes and the eluent.