Direct synthesis of aromatic polyamides

The synthesis of aromatic polyamides, namely poly(p-phenylenetere-phthalamide) and poly(p-benzamide), via phosphorylation reaction has been thoroughly investigated. The effect of reaction temperature, concentration of monomers and reactants, type and concentration of salts, amount of the activator and its stepwise addition have been considered and the optimum reaction conditions found. The resultant synthesis of the above polymers, also in connection with the high purification techniques of all components of the reaction mixture, allowed to reach the highest molecular weights obtained so far by this synthetic way.     

Direct synthesis of polyamides via catalytic dehydrogenation of diols and diamines

We report a direct synthesis of polyamides via catalytic dehydrogenation of diols and diamines. A PNN pincer ruthenium complex, the Milstein catalyst, was used for this reaction and polyamides with number average molecular weight from ～10 to 30 kDa could be obtained from a wide variety of diols and diamines bearing aliphatic or aromatic, linear or cyclic spacers. Because of the high catalytic selectivity of primary amine over secondary amine, polyamines could be conveniently incorporated into linear polyamides without tedious protection/deprotection steps. Compared with conventional condensation method, this catalytic system avoids the requirement of stoichiometric preactivation or in situ activation reagents and provides a much cleaner process with high atomic economy.     

Preparation of zwitterionic ribonucleoside phosphoramidites for solid-phase siRNA synthesis

RNA oligomers, carrying 2'-O-modified nucleosides, proved to be extremely useful in different antisense strategies, including RNAi. The 2'-O-alkyl modification, carrying an amino functionality, deserves special attention due to its ability to neutralize the negatively charged phosphate backbone, leading to improved physicochemical and pharmaceutical properties of antisense agents. Here, we report a very short, convenient, and straightforward synthesis of phosphoramidites for all four 2'-aminoethyl-modified natural ribonucleosides, where the aminoethyl group is introduced in a single alkylation step.     

Solution synthesis of fully protected thymidine dimers using various phosphoramidites

The synthesis of thymidine-3′-phosphoramidites of various amines and their use in the solution synthesis of fully protected thymidine dimers in high yields is described.     

Microwave assisted synthesis of Py-Im polyamides

Microwave synthesis was utilized to rapidly build Py-Im polyamides in high yields and purity using Boc-protection chemistry on Kaiser oxime resin. A representative polyamide targeting the 5'-WGWWCW-3' (W = A or T) subset of the consensus Androgen and Glucocorticoid Response Elements was synthesized in 56% yield after 20 linear steps and HPLC purification. It was confirmed by Mosher amide derivatization of the polyamide that a chiral α-amino acid does not racemize after several additional coupling steps.     

Radical-mediated synthesis of alpha-C-glycosides based on N-acyl galactosamine

[structure] C-Glycosides of N-acyl 2-amino-2-deoxygalactose (acyl = MeCO, CF(3)CO, t-BuOCO) are available in a stereoselective manner by trapping of an anomeric radical with an activated alkene. Using anomeric selenides, radical generation and trapping is carried out under conditions that avoid competitive reduction, and this chemistry has been applied to the synthesis of the novel C-glycoside analogue of O-benzyl alpha-D-GalNAc.     

Optimized synthesis of [3-N]-labeled uridine phosphoramidites

A short and high-yielding synthetic route to [3-¹⁵N]-labeled uridine phosphoramidite 1 (26% overall yield from uridine) has been developed. This will enable automated synthesis of isotopically labeled RNA strands and facilitate their use in structural studies.     

Parallel synthesis of H-pin polyamides by alkene metathesis on solid phase

A small library of H-pin polyamides with variable aliphatic bridge lengths (CH(2))(n)(), where n = 4-8, connecting a central Py/Py pair was prepared via parallel synthesis with Ru-catalyzed alkene metathesis on solid phase as a complexity-generating cross-linking reaction. DNA binding affinities and sequence specificities were analyzed for each member of the library to determine the optimum linker length. An H-pin polyamide with a six-methylene bridge was found to have the highest affinity to its match site with high selectivity over a 1-bp mismatch site. The relationship between the number of methylenes in the linker (CH(2))(n)() and affinity is n = 6 > 4 > 7 > 5 > 8. These results indicate that 6 followed by 4 methylene-bridged polyamides represent the optimum spacer length for the H-pin motif in the DNA minor groove. Importantly, the H-pin is competitive with hairpin polyamides with respect to affinity and specificity. The metathesis-based convergent synthetic route to H-pin polyamides expands the scope of readily available DNA recognition motifs for small molecule-based gene regulation studies.     

Deoxynucleoside phosphoramidites—A new class of key intermediates for deoxypolynucleotide synthesis

The development of a new class of nucleoside phosphites is described. These compounds are stable to normal laboratory conditions, are activated by mild acid treatment, and are observed to react essentially quantitatively with protected nucleosides.     

Synthesis of sugar nucleotides by application of phosphoramidites

A new method for the construction of pyrophosphates is reported based on the coupling of a sugar phosphate and a nucleoside phosphoramidite. The in situ formed phosphate-phosphite intermediate was subsequently oxidized with tBuOOH. Three UDP-N-acetylglucosamine derivatives were prepared using this one-pot procedure in good yields.     

Chemoselective synthesis of polyamides containing hydroxyl and amino substituents by direct polycondensation

A convenient method for the synthesis of polyamides containing hydroxyl and amino substituents on the aromatic rings of the backbones was developed. These polymers were prepared readily by the chemoselective polycondensation of dicarboxylic acids with diamines with hydroxyl and amino functional groups via the activating agent diphenyl(2,3‐dihydro‐2‐thioxo‐3‐bezoxazolyl)phosphonate. The model reactions were studied in detail to demonstrate the feasibility of chemoselective polycondensation. The direct polycondensation of 5‐hydroxy or 5‐aminoisophthalic acid with 4,4′‐diamino‐4″‐hydroxytriphenylmethane proceeded smoothly under mild conditions and produced the desired polyamides with inherent viscosities up to 0.73 dL · g⁻¹. The polymers obtained were characterized by IR, ¹H NMR, and ¹³C NMR spectroscopies. The polymers were readily soluble in aprotic polar solvents such as N‐methyl‐2‐pyrrolidinone, N,N‐dimethyl formamide, and dimethyl sulfoxide. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 3875–3882, 2000     

New approach to synthesis of aromatic N-phenyl-substituted polyamides

It is shown that polyimidates obtained by polycondensation of bisphenols with imidoyl chlorides may be transformed into N-phenylsubstituted aromatic polyamides. The rearrangement occurs as a result of heating at 260–340°C, and, in a diphenyl ether solution, at 240°C. The resulting polymers are soluble in organic solvents and demonstrate high thermooxidative stability.     

Chapman rearrangement in the synthesis of aromatic polyamides

It is established that N‐phenylsubstituted aromatic polyamides can be obtained via Chapman rearrangement of polybenzanyliminoesters synthesized by an interaction of bisphenols with imidoylchlorides. The rearrangements in melt or in film occur as a result of heating at 260–340 °C, and in a diphenyl ether solution rearrangement occurs at 240 °C. The resulting polymers are soluble in organic solvents and demonstrate high thermooxidative stability. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 4656–4660, 2007     

Use of phosphite amides in the synthesis of polyamides

The preparation of polyamides by the phosphite amide procedure was investigated. The yield of amidation was determined in the reaction of diethyl- or o-phenylenephosphite derivatives of piperidine, piperazine, or trans-2,5-dimethylpiperazine with either mono- or dicarboxylic acids. Higher yields were obtained by using diethyl phosphite derivatives; however, for both types of derivatives the yields were never greater than 90%. Only low molecular weight polymers could be obtained under optimum reaction conditions. In the polycondensation of (+)-trans-1,3-cyclohexanedicarboxylic acid or (+)-trans-1,2-cyclohexanedicarboxylic acid with phosphite derivatives of either piperazine or trans-2,5-dimethylpiperazine, the optical rotation of the polymers was lower than the rotation of the corresponding polyamides prepared by the interfacial condensation procedure with dicarboxylic acid chlorides. It was shown that an intermediate mixed anhydride was formed during the amidation reaction. This may account for the observed racemization.     

Stereoselective synthesis of alpha-glycosyl phosphites and phosphoramidites via O-selective glycosylation of H-phosphonate derivatives

A highly stereo- and chemoselective glycosylation of H-phosphonate derivatives with glycosyl iodides was discovered as a reverse reaction of the formation of a glycosyl iodide from a glycosyl phosphite and I- under mild acidic conditions. Further study on the unique reaction showed that the reaction provided various alpha-glycosyl phosphites and phosphoramidites in a highly stereoselective manner with complete O-selectivity.     

Bisphenylene homologues of BINOL-based phosphoramidites: synthesis, stereostructure, and application in catalysis

Bis-ortho- and bis-meta-phenylene homologues of BINOL-based N,N-dimethylphosphoramidites were prepared from the corresponding diols by treatment with hexamethyltriaminophosphane. Phosphoramidites derived from bulkier secondary amines were synthesized by 5-phenyl-1H-tetrazole-promoted amine exchange. All the phosphoramidites were obtained as single diastereomers. Their configurations at the C(naphthyl)-C(phenyl) axes were determined by vibrational circular dichroism (VCD) spectroscopy. Preliminary testing of the ligands in copper-catalyzed conjugate addition of diethylzinc to acyclic enones and nitrostyrene gave the corresponding products in up to 74% ee.     

Copper-mediated synthesis of N-acyl vinylogous carbamic acids and derivatives: synthesis of the antibiotic CJ-15,801

[reaction: see text] Copper(I)-mediated C-N bond formation has been employed to prepare both N-acyl vinylogous carbamic acids and ureas. The novel N-acyl vinylogous carbamic acid antibiotic, CJ-15,801, was synthesized using this methodology.     

Commercially available 5'-DMT phosphoramidites as reagents for the synthesis of vinylphosphonate-linked oligonucleic acids

[reaction: see text]. Commercially available cyanoethyl phosphoramidites derived from T, d(C), d(A), and d(G) were hydrolyzed (1H-tetrazole, MeCN/H2O) to give the corresponding H-phosphonates in excellent yields. Palladium(0)-catalyzed cross-coupling of each of these with the thymidine-derived vinylbromide 2 afforded the corresponding vinylphosphonate-linked dimers TT, d(C)T, d(A)T, and d(G)T in modest to good yields. The TT dimer was further elaborated to give a 5'-DMT-TT-3'-CEP building block, and this was used in the automated synthesis of the TpTTpT tetramer.