Functional monomers and polymers. XCIV. Photochemical reactions on the synthetic polymers containing thymine bases in the presence of adenine derivatives

Photodimerization reactions of polyacrylate and polymethacrylate derivatives and the dimer model compound containing thymine bases were studied in the presence of adenine derivatives in dimethyl sulfoxide; N,N-dimethylformamide; and dimethyl sulfoxide–ethylene glycol solutions. The photodimerization of thymine bases both in the polymers and in the dimer model compound was found to be quenched by the addition of adenine derivatives. Base-base interaction in the ground state was also studied by ultraviolet (UV) spectroscopy in the three solvents. The quenching of the photodimerizationof thymine bases in the presence of adenine derivatives was discussed in terms of the specific interaction between adenine and thymine bases both in ground and excited states.     

Functional monomers and polymers. CX. Methylation and interaction studies on uracil-containing polymethacrylate derivatives

A polymethacrylate derivative containing uracil bases was methylated by using methyl iodide or dimethyl sulfate to give polymers containing 3-methyluracil derivatives. In the case of methylation with dimethyl sulfate, sulfonation at 5-position of the bases occurred in addition to the methylation at N-3 position. The methylated polymers thus obtained were used further for the study of polymer complex formation with polymethacrylate containing adenine base.     

Functional monomers and polymers. XXXXI. Template polymerization of methacryloyl-type monomers containing nucleic acid bases

In due consideration of the specific base–base interaction that exists between nucleic acid molecules, the free radical polymerization of N-β-methacryloyloxyethyl derivatives of adenine, thymine, and theophylline initiated by azobisisobutyronitrile (AIBN) was studied in the presence of N-β-methacryloyloxyethyl-type polymers which have complementary nucleic acid bases as template polymers. The rate of polymerization of N-β-methacryloyloxyethyladenine was accelerated when poly(N-β-methacryloyloxyethyluracil) or -thymine was present in the polymerization system. The effect of the stereoregularity of the template polymers, as well as polymerization temperature and the sort of solvents used on the rate of polymerization, was studied and discussed in some detail. The results suggest that the interaction between complementary bases plays a role in template polymerization behavior.     

Synthesis and structures of platinum(II) mixed ligand complexes with purine or piyrimidine bases of DNA and imidazole derivatives. Part 2

Summary Platinum(II) mixed ligand complexes with either purine or pyrimidine and imidazole derivatives were prepared and characterized by i.r., Raman and electronic spectroscopy. The compounds had the general formula [PtL¹L²Cl₂], where L¹ = adenine, guanine, hypoxanthine, cytosine, 2-aminopyrimidine; L² =N-methylimidazole,N-ethyl-imidazole orN-propylimidazole. The platinum(II) complexes had a square planar structure withcis-halogens. Purine or pyrimidine and imidazole derivatived bases acted as monodentate ligands coordinated via the N(7) of purine and N(3) of pyrimidine and imidazole derivatives.     

Genomic N(6)-methyladenine determination by MEKC with LIF

2′‐Deoxy‐N⁶‐methyladenosine (N⁶mdA) is frequently found in prokaryotic and unicellular eukaryotic genomes. Although methylated bases represent only a minor fraction of the genome, they, however, exhibit strong biological effects. Here, we report a fast and sensitive method for the quantification of global adenine methylation in DNA. The method is based on a recently developed procedure consisting of fluorescence labeling of deoxyribonucleotides with BODIPY FL EDA and analysis by CE with LIF. An oligodeoxyribonucleotide site specifically modified with N⁶mdA was used for peak assignment, to establish separation conditions and to determine the LOD. The method yielded a LOD for N⁶mdA of 280 pM (1.4 amol), which is equivalent to ～1 N⁶mdA per 10⁴ normal nucleotides (0.01%) using 1 μg of DNA as the matrix. After calibration with completely dam methylated λ DNA, the assay was applied to the analysis of various DNAs.     

Interaction of the mutagenic base analogs O6-methylguanine and N4-hydroxycytosine with potentially complementary bases

Infrared spectroscopy has been employed to study possible base pair interactions, in nonpolar media, between O⁶-methylguanine and uracil, cytosine and adenine; and between derivatives of N⁴-hydroxycytosine and adenine. The association constants of O⁶-methylguanine with uracil, cytosine, and adenine are well below 1M^–1, whereas those for interaction of 1-methyl-N⁴-methoxycytosine and its 5-methyl derivative with adenine are identical, K = 14M^–1. The significance of the latter finding is discussed in relation to the conformation of the exocyclic N⁴-methoxy group. Quantum chemical calculations, with the aid of the perturbation method, were carried out for the interaction of O⁶-methylguanine with uracil, cytosine, and adenine, to establish the most energetically favoured configurations for interactions of the free bases, and of the same base pairs in the B form of DNA. The role of the conformation of the exocyclic —OCH₃ group in O⁶-methylguanine is discussed. The relevance of both the experimental and theoretical results to mutagenesis by O⁶-methylguanine and N⁴-hydroxycytosine is examined.     

Functional monomers and polymers. CII. Synthesis and properties of oligomer models of polyethyleneimine derivatives containing pendant adenine bases

A series of oligomer model compounds of polyethyleneimine derivatives with pendant adenine bases were prepared by the reaction of a carboxyethyl derivative of adenine with oligomeric amines, using an activated ester method. To evaluate the intramolecular interaction between pendant adenine bases in these compounds, ultraviolet spectra at various pH regions were measured. Ultraviolet hypochromicities and pK_a values depended linearly on the chain length of the oligomers. The results showed that the intramolecular interactions of adenine bases were realized less in their protonated than neutral forms.     

Nonglycoside analogs of nucleotides

N¹-(2′,3′-Dihydroxypropyl)uracil, -thymine, -cytosine, and N⁹-(2′,3′-dihydroxypropyl)adenine were synthesized by alkylation of nucleic bases with 2,3-O-isopropylideneglycerol chlorohydrin, subsequent separation of the resulting mixtures, and removal of the protective groupings. Phosphorylation of these compounds or of their selectively substituted derivatives gave 2′(3′)-monophosphates, which were converted to 2′,3′-cyclophosphates by reaction with N,N′-dicyclohexylcarbodiimide. Thionation of the corresponding cytosine derivatives gave N¹-(2′,3′-dihydroxypropyl)-4-thiouracil and its 2′(3′) phosphate.     

Functional monomers and polymers. XXXXVI. A copolymerization study of methacryloyl-type monomers containing nucleic acid bases in chloroform solution

Behavior of the free radical copolymerization of N-β-methacryloyloxyethyl derivatives of adenine with that of thymine was studied in chloroform solution, taking account of the specific base-base interaction of these monomers. Hydrogen bonding interaction between such monomers was observed by NMR spectroscopy. The acceleration of copolymerization was found to be greater either at lower monomer concentration or at lower polymerization temperature. When N-β-methacryloyloxyethylcarbazole was used as a comonomer, the rate of copolymerization showed a similar trend as in the case of usual free radical copolymerizations. From r₁ and r₂ values obtained, the copolymerization was found to be alternating, particularly in the case of copolymerization between monomers having complementary nucleic acid bases. The results suggest that the hydrogen bonding interaction between adenine and thymine plays a role in the propagation step.     

Functional monomers and polymers. XXXXVII. Complex formation of stereoregular methacryloyl-type polymers containing nucleic acid bases

The complex formation between a poly(N-β-methacryloyloxyethyl) derivative of adenine with one of thymine or uracil was studied in dimethyl sulfoxide and ethylene glycol mixture by ultraviolet (UV) spectroscopy. For the polymer pairs containing complementary nucleic acid bases both hypochromicity and hyperchromicity were found. Stereoregularity of the polymers, as well as the conditions for measurement of, for example, solvent, temperature, and time, affected the complex formation. Both inter- and intramolecular interaction of polymers in solution were discussed in some detail.     

Synthesis and antibacterial activity of methylated N-(4-N,N-dimethylaminocinnamyl) chitosan chloride

The methylated chitosan containing different aromatic moieties were synthesized by two steps, the reductive amination and the methylation. The chemical structures of all methylated derivatives, methylated N-(4-N,N-dimethylaminocinnamyl) chitosan chloride (MDMCMCh), methylated N-(4-pyridylmethyl) chitosan chloride (MPyMeCh), and N,N,N-trimethyl chitosan chloride (TMChC) were characterized by ATR-FTIR and ¹H NMR spectroscopy. The molecular weights of the methylated chitosan derivatives were determined by gel permeation chromatography. The results revealed that the molecular weights of chitosan and N-aryl chitosan derivatives could be reduced by the methylation process. The degree of N-substitution (DS) and the degree of quaternization (DQ) were calculated by ¹H NMR ranged from 50% to 76%, and 28% to 82%, respectively. The water solubility of the methylated chitosan derivatives decreased with increasing concentration and pH. The antibacterial studies of these methylated chitosan derivatives were carried out by using minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) methods against Escherichia coli ATCC 25922 (Gram-negative) and Staphylococcus aureus ATCC 6538 (Gram-positive) bacteria. It was found that the MDMCMCh showed higher antibacterial activity than TMChC while MPyMeCh exhibited reduced antibacterial activity against both bacteria at the same DQ level. In comparison to each of the chemical structure, it was found that the antibacterial activity was not only dependent on the DQ but it was also dependent on the positively charged location and the molecular weight.     

Synthesis and structure of palladium(II) mixed complexes with DNA purine or pyrimidine bases and imidazole derivatives. Part I

Summary Palladium(II) mixed ligand complexes with purine or pyrimidine and imidazole derivatives were prepared and characterized by i.r., Raman and electronic spectroscopy. The compounds have the general formula [Pd(L₁)(L₂)(X₂)]; where L₁ = adenine, guanine, hypoxanthine, cytosine, 2-aminopyrimidine, 4(6)-hydroxypyrimidine; L₂ = N-methylimidazole, N-ethylimidazole or N-propylimidazole; X = Cl or Br. The complexes are square planar with cis-halogens. The purine, pyrimidine and imidazole bases act as monodentate ligands coordinated via the N(7) of purine and N(3) of pyrimidine and imidazole.     

Functional monomers and polymers. LXXI. Conformation and interaction studies of poly-L-lysine derivatives with pendant nucleic acid bases

Copolymers of L -lysine and L -lysine derivatives which contained nucleic acid bases substituted on the N^ε position were synthesized by grafting nucleic acid derivatives onto poly-L -lysine. The conformation and interaction of these copolymers in solution were studied by using spectroscopic measurements. They existed in helical conformation at neutral pH values, and the polymer complex formation among them was examined by ultraviolet (UV) measurements in organic solvents. A decrease in the nucleic acid base content of the copolymers resulted in a decrease in helical structures and also in interactions with the polymer-containing complementary bases.     

Vinylsulfonylethyl derivatives of nucleic acid bases and their graft polymers on polyethyleneimine

Vinylsulfonylethyl (VSE) derivatives of the nucleic acid bases adenine, thymine, cytosine, and the nucleosides inosine and uridine have been prepared via a simple Michael reaction with divinyl sulfone. The VSE derivatives were grafted on a polyethyleneimine (PEI) backbone. PEI of different molecular weights (1400, 1800 and 50,000–100,000) were used and also two different molar ratios (1:1 and 1:2) of monomer to PEI were employed. From the ¹H-NMR and elemental analysis, it appeared that in almost all instances the grafting was quantitative. In one case, both 1-VSE-thymine and 9-VSE-adenine were grafted on the same PEI backbone. Interactions between some of these polymers were investigated by UV spectroscopy. The expected complementary base pairing was observed only in DMSO–ethylene glycol solvent system but not in DMSO. The adenine polymer showed a one-to-one interaction with the thymine polymer.     

Orientation effects in the nitration of the dithieno[b,d]pyridine N-oxides. Its dependence on acidity of the reaction medium

The nitration of three dithienopyridine-N-oxides was investigated. The regiochemistry of the reaction was dependent on the reaction conditions used. Under strongly acidic conditions the positional preference is similar for the N-oxides and free bases. However, under mildly acidic or neutral conditions a completely different substitution pattern was obtained. In the latter case those ring positions were substituted which are expected to be unfavored or forbidden in electrophilic substitution of the free bases. The structures of the nitro derivatives were proven by extensive use of ¹H and ¹³C nmr spectroscopy.     

Thermotropic liquid crystalline polymers. II. Polymers with amino acid fragments in the side chains

The comblike polymers, poly(N^ε-methacryloyl-N^α-acyl) derivatives of L -lysine, which contain amino acid fragments and long sequences of methylene groups in the side chain, were synthesized. This article, which is based on x-ray data, differential thermal analysis, and optical microscopy, describes the structure of these polymers and their properties. It also shows that the combination of anisodiametric side groups with a “rigid” matrix of main chains leads to a liquid crystalline structure of examined polymers.     

Carbazole-substituted dehydroalanine main chain polymers. Synthesis and characterization of poly[methyl 2-(9-carbazolyl) acetylaminopropenoate] and poly[2-(9-carbazolyl) acetylaminopropenoic acid]

The preparation and radical-initiated polymerization of a carbazole-substituted N-acylated dehydroalanine, namely, 2-(9-carbazolyl)acetylaminopropenoic acid ( 7 ) and its methyl ester ( 6 ) is reported. The monomers 6 and 7 were prepared by dehydrochlorination of N-acylated β-chloroalanine derivatives. The monomer model compounds for the two polymers, namely, 2-(9-carbazolyl)acetylamino-2-methylpropanoic acid ( 11 ) and its methyl ester ( 10 ), were also prepared. The polymers and their monomer model compounds were characterized by elemental analysis, IR and ¹H-NMR spectra. The polymers 12 and 13 of different molecular weights could be obtained by changing the monomer-to-initiator ratios used in polymerization experiments.     

Mutual Transformations of Isomers in N-Methyl-5-vinyltetrazole Copolymers

Mutual transformations of N ¹ and N ² isomeric derivatives of 5-vinyltetrazole polymers in the absence of a solvent were studied.     

Adamantylazoles: XIV. Acid-catalyzed alkylation of 5-aminotetrazoles with tertiary alcohols

Alkylation of 5-aminotetrazole with tert-butyl alcohol or adamantan-1-ol in sulfuric acid gave a mixture of isomeric N ¹- and N ²-alkyl derivatives, as well as 1,3-dialkyl-5-aminotetrazolium salt. Adamantylation of 1-substituted 5-aminotetrazoles led to the formation of mixtures of 1,3- and 1,4-disubstituted 5-aminotetrazolium salts which can be converted into the corresponding free bases.