Low energy,low temperature mass spectra. 6—A synoptic view

A review is presented of the low energy, low temperature mass spectra of a number of organic compounds, namely alkanes, alkanols, ethers, amines, alkanals, alkanones, alkanoic acids and alkanoic esters. The main fragmentation routes are described and the simplification of the mass spectra as compared with the 70 eV equivalents is emphasized.     

Low energy,low temperature mass spectra: I—selected derivatives of n-octane

The low voltage, low temperature mass spectra of a series of octane derivatives n-C₈H₁₇X with X=CH₃, OH, OCH₃, NH₂, NHCH₃, N(CH₃)₂, CO₂H, CO₂CH₃, CO₂C₂H₅, CHO and COCH₃ are reported and discussed, using arguments involving thermochemistry where appropriate. The structures of these compounds can be uniquely assigned on the basis of such mass spectra.     

Structural studies on ceramides as lithiated adducts by low energy collisional-activated dissociation tandem mass spectrometry with electrospray ionization

We applied electrospray ionization (ESI) tandem quadrupole mass spectrometry to establish the fragmentation pathways of ceramides under low energy collisional-activated dissociation (CAD) by studying more than thirty compounds in nine subclasses. The product-ion spectra of the [M + Li]+ ions of ceramides contain abundant fragment ions that identify the fatty acyl substituent and the long-chain base (LCB) of the molecules, and thus, the structure of ceramides can be easily determined. Fragment ions specific to each ceramide subclasses are also observed. These feature ions permit differentiation among different ceramide subclasses. The ion series arising from the classical C-C bond cleavages that were reported in the fast-atom bombardment (FAB)-high energy tandem mass spectrometry is not observable; however, the product-ion spectra contain multiple fragment ions informative for structural characterization and isomer identification. We also investigated the tandem mass spectra of the fragment ions generated by in-source CAD (pseudo-MS3) and of the deuterium-labeling molecular species obtained by H/D exchange to support the ion structure assignments and the proposed fragmentation pathways that lead to the ion formation.     

Low-energy,low-temperature mass spectra. 9—The linear undecanols

The 70 and 12 eV mass spectra of the six linear undecanols are reported. Apart from undecan-1-ol, whose spectrum is akin to that of undec-1-ene, the spectra are dominated by peaks corresponding to loss of water and α-cleavage. The low voltage spectra are more readily interpreted.     

Effect of electrospray ionization conditions on low-energy tandem mass spectra of peptides

The effect of electrospray ionization (ESI) conditions on low-energy tandem mass spectra of peptides in the relative molecular mass range 400–1200 was examined. For singly charged peptide ions the source skimmer potential (which determines the degree of acceleration of the ions through the intermediate pressure region in the source) can strongly influence the extent of fragmentation observed in tandem mass spectra, especially at low collision energies. For each peptide there is an optimum skimmer potential which represents a balance between generating ions with sufficient internal energy for subsequent tandem mass spectrometric experiments and inducing the onset of other processes such as source fragmentation. The fragmentation which can be achieved in tandem mass spectra with high skimmer potentials differs from ESI source fragmentation for the same peptides. We have found that fragmentation in ESI mass spectra depends both on skimmer potential and on solvent pH, presumably because the latter determines the proportion of doubly charged species generated from a given peptide. Low-energy tandem mass spectra of peptides following ESI are equally as sensitive to peptide structure and the type of adduct studied (e.g. [M + H]⁺ vs. [M + NH₄]⁺) as tandem mass spectra obtained following older ionization methods such as fast atom bombardment.     

Chemical ionization mass spectra of 2, 4, 6-trinitroaromatic compounds

The methane and isobutane chemical ionization mass spectra of ten 2,4,6-trinitroaromatic compounds have been recorded. The mass spectra contain intense [M + 1]⁺ ions and usually little fragmentation. However, in some cases major fragmentation processes have been observed. Some unusual adduct ions have been found with isobutane as the reagent and their temperature dependence has been studied.     

The mass spectra of small-ring heterocycles. IV

Both the high and low resolution mass spectra of fourteen isomeric trans- and cis-aroylaziridines are presented. In contrast to earlier low resolution mass spectral work on these compounds [1], a new fragmentation pathway for the loss of hydroxyl is presented. Also, the simple fission of the N-alkylnitrogen bond is described. Detailed fragmentation mechanisms are presented and discussed for the major ions found in the mass spectra.     

Interference peaks in mass analysed ion kinetic energy spectra

When mass analysed ion kinetic energy spectroscopy is performed on ions of low abundance and low mass compared with the rest of the ions present in the ion chamber, severe interference may be observed. The major form taken by the interference is of narrow peaks at non-integral mass numbers. Many such peaks can be observed in mass analysed ion kinetic energy spectra and they are mainly attributed to decompositions of metastable ions occurring in the first field free region of the reversed geometry double focusing mass spectrometer.     

Fast-atom bombardment mass spectrometry and low energy collision-induced tandem mass spectrometry of tauroconjugated bile acid anions

Fragmentation of negative ions produced by fast-atom bombardment (FAB) from 14 tauroconjugated bile acids and some of their deuterated analogs has been studied by mass spectrometry and by collision-induced dissociation (CED) tandem mass spectrometry at low energy. Low energy collision-induced dissociation of the deprotonated molecules [M - H]^? of these tauroconjugated bile acids leads to both charge-driven and charge-remote fragmentations (CRF). The former yields neutral loss from the side chain with charge migration during the fragmentation process. These fragments dominate the CID spectra, but are absent from the FAB spectra. Their relative abundances are dependent on the number and the positions of the hydroxyl groups in the steroid nucleus and thus permit distinction among some positional isomers. The CRF fragments correspond to cleavages in the side chain up to fragmentations across the steroid rings with charge retention on the sulfonate group. These CRF fragments, which also are useful for structural identification, are less intense in CID than in FAB spectra. It appears that these charge-remote fragments are favored by unsaturation in the steroid rings, either as keto groups or as endocyclic double bonds. Tandem mass spectrometry combined with the use of deuterated analogs demonstrates that the structures of the survivor pseudomolecular ions and of the CRF fragments are not rearranged.     

(+)-Silybin, a pharmacologically active constituent of Silybum marianum: fragmentation studies by atmospheric pressure chemical ionization quadrupole time-of-flight tandem mass spectrometry

The fragmentation behavior of (+)-silybin (1) and (+)-deuterosilybin (2), as well as of their flavanone-3-ol-type building blocks, such as 3,5,7-trihydroxy-2-phenyl-4-chromanone (3) and 2-(1,4-benzodioxolanyl)-3,5,7-trihydroxy-4-chromanone (4), were investigated by atmospheric pressure chemical ionization quadropole time-of-flight tandem mass spectrometry in the positive ion mode (APCI(+)-QqTOF MS/MS). The product ion spectra of the protonated molecules of 1 revealed a rather complicated fragmentation pattern with product ions originating from consecutive and competitive loss of small molecules such as H2O, CO, CH2O, CH3OH and 2-methoxyphenol, along with the A+- and B+-type ions arising from the cleavage of the C-ring of the flavanone-3-ol moiety. The elucidation of the fragmentation behavior of 1 was facilitated by acquiring information on the fragmentation characteristics of the flavanone-3-ol moieties and 2. The capability of the accurate mass measurement on the quadrupole time-of-flight mass spectrometer allowed us to determine the elemental composition of each major product ion. Second-generation product ion spectra obtained by combination of in-source collision induced dissociation (CID) with selective CID (pseudo-MS(3)) was also helpful in elaborating the fragmentation pathways and mechanism. Based on the experimental results, a fragmentation mechanism as well as fragmentation pathways for 1 and its flavanone-3-ol building blocks (3, 4) are proposed and discussed.     

Structure and fragmentation of b2 ions in peptide mass spectra

In a number of cases the b2 ion observed in peptide mass spectra fragments directly to the a1 ion. The present study examines the scope of this reaction and provides evidence as to the structure(s) of the b2 ions undergoing fragmentation to the a1 ion. The b2 ion H-Ala-Gly+ fragments, in part, to the a1 ion, whereas the isomeric b2 ion H-Gly-Ala+ does not fragment to the a1 ion. Ab initio calculations of ion energies show that this different behavior can be rationalized in terms of protonated oxazolone structures for the b2 ions provided one assumes a reverse activation energy of approximately 1 eV for the reaction b2-->a2; such a reverse activation energy is consistent with experimental kinetic energy release measurements. Experimentally, the H-Aib-Ala+ b2 ion, which must have a protonated oxazolone structure, fragments extensively to the a1 ion. We conclude that the proposal by Eckart et al. (J. Am. Soc. Mass Spectrom. 1998, 9, 1002) that the b2 ions which undergo fragmentation to a1 ions have an immonium ion structure is not necessary to rationalize the results, but that the fragmentation does occur from a protonated oxazolone structure. It is shown that the b2-->a1 reaction occurs extensively when the C-terminus residue in the b2 ion is Gly and with less facility when the C-terminus residue is Ala. When the C-terminus residue is Val or larger, the b2-->a1 reaction cannot compete with the b2-->a2 fragmentation reaction. Some preliminary results on the fragmentation of a2 ions are reported.     

Theory analysis of mass spectra of long-chain isocyanates

Electron impact mass spectra of four long-chain isocyanates, lauryl isocyanate, tetradecyl isocyanate, hexadecyl isocyanate and octadecyl isocyanate, were obtained with a GCT high-resolution time-of-flight mass spectrometer. The four isocyanates studied gave a common base peak of m/z 99, which suggested the formation of a stable six-membered ring structure to decentralize the positive charge. Quantum-mechanical energy calculation justified that the six-membered ring base peak had the lowest energy. The positive charge assigned during the fragmentation of the radical cation, and the relative intensity of the fragment ion peaks, were explained by quantum-mechanical calculations as well.     

Collision-induced dissociation mass spectra of positive ions derived from tetrahydropyranyl (THP) ethers of primary alcohols

Peaks for [M + H](+) are not observed when electrospray ionization mass spectra of tetrahydropyranyl (THP) ethers are recorded under acidic conditions. However, gaseous [M + H](+) ions can be generated from ammonium adducts of THP ethers of primary alcohols by in-source fragmentation. The product ion spectra of these proton adducts show two significant peaks at m/z 85 and 103. Tandem mass spectrometric data obtained from appropriately deuteriated derivatives and ab initio calculations indicate that the m/z 85 ion originates from more than one mechanism and represents two structurally different species. A charge-directed E1-elimination mechanism or an inductive cleavage mechanism can produce the 3,4,5,6-tetrahydropyrylium ion as one of the structures for the m/z 85 ion, whereas a charge-remote process with ring contraction can generate the 5-methyl-3,4-dihydro-2H-furylium ion as the other structure. A comparison of the relative abundances of product ions from different isotopologues showed that the charge-remote process is the preferred mechanism. This is congruent with the ab initio calculations, which showed that the dihydrofurylium ion bears the lowest energy structure. The less abundant m/z 103 ion, which represents a protonated tetrahydropyran-2-ol, is formed by a charge-remote process via a proton transfer from the alkyl substituent. This process involves the formation and rearrangement of a carbenium ion in close association with a hydroxypentanal molecule. A proton transfer from the carbenium ion to the aldehyde is followed by elimination of an alkene.     

The mass spectra of some benzyl esters and thioethers

The electron impact mass spectra of a large number of benzyl esters of carboxylic acids are reported. The fragmentation behaviour is discussed and the esters are divided into groups according to structure and fragmentation. For most esters benzylic cleavage with H transfer competes with simple cleavage.     

Fast atom bombardment mass spectra of monosulphonated merocyanine dyestuffs

The FAB mass spectra of four sulphonated merocyanine dyes are investigated. Negative ion spectra are superior to those in the positive ion mode. The special structure of merocyanines with an acidic group at one end of the molecule and a basic group at the other leads to significantly different fragmentation pathways for positive and negative ions.     

Comparisom of electron impact and field desorption mass spectra I : Substituted sultams

The low and the high resolution electron impact (EI) and field desorption (FD) mass spectra (MS) of substituted 5- or 6-membered ring sultams are given and the main fragmentation pathways are interpreted. Sultams carrying polar substituents, such as dicarboxylic acids and their mono- and di-amides show either small or no molecular ions with EI-MS. Their existence, however, can be indirectly inferred by metastable defocusing. In contrast to these findings FD-MS display in all our examples the quasimolecular ions (M + 1)⁺ as the base peaks of the spectra. While the pattern for the EI fragmentations follows the generally known rules very closely, five general aspects for the fragmentation pathway of FD mass spectra have been established which demonstrate the characteristics of this modern analytical method. The use of high temperature activated emitters enables a choice to be made between obtaining only molecular peaks and producing significant fragments via a controlled thermal degradation. This is the first time that the complementary and different characters of the information obtained with the two ionization modes EI and FD have been demonstrated on a homologous series of compounds.     

Laser desorption ionization and MALDI time-of-flight mass spectrometry for low molecular mass polyethylene analysis

Polyethylene's inert nature and difficulty to dissolve in conventional solvents at room temperature present special problems for sample preparation and ionization in mass spectrometric analysis. We present a study of ionization behavior of several polyethylene samples with molecular masses up to 4000 Da in laser desorption ionization (LDI) time-of-flight mass spectrometers equipped with a 337 nm laser beam. We demonstrate unequivocally that silver or copper ion attachment to saturated polyethylene can occur in the gas phase during the UV LDI process. In LDI spectra of polyethylene with molecular masses above approximately 1000 Da, low mass ions corresponding to metal-alkene structures are observed in addition to the principal distribution. By interrogating a well-characterized polyethylene sample and a long chain alkane, C94H190, these low mass ions are determined to be the fragmentation products of the intact metal-polyethylene adduct ions. It is further illustrated that fragmentation can be reduced by adding matrix molecules to the sample preparation.     

Poor reproducibility of in-source collisional atmospheric pressure ionization mass spectra of toxicologically relevant drugs

The purpose of the study was to examine the intra- and interlaboratory reproducibility of mass spectra obtained with liquid chromatography-atmospheric pressure ionization mass spectrometry (LC--API-MS) both in electrospray (ESI) and atmospheric pressure chemical ionization (APCI) modes. Toxicologically relevant drugs of different polarity were selected as test substances: morphine-6-glucuronide, 6-monoacetylmorphine, codeine, lysergic acid diethylamide, methylenedioxymethamphetamine. The study was performed in two laboratories using identical instruments and in one using a slightly different instrument. Basic instrument settings and mobile phase were identical in all laboratories. Mass spectra of drugs were taken at four collision energy voltages and using mobile phase of different composition (four concentration levels of acetonitrile and of ammonium formate buffer). The experiments demonstrated that mass spectra of given drugs, obtained in identical conditions with identical instruments, may show very different degrees of fragmentation. Mass spectra obtained with different instruments differed profoundly not only in the degree of fragmentation, but also different fragments and adducts were observed. Short-term intralaboratory reproducibility of mass spectra was satisfactory. On the other hand, the long-term experiments showed different degrees of fragmentation of APCI-generated mass spectra at nominally identical fragmentation energy. The changes in the composition of the mobile phase (concentration of organic modifier or buffer molarity) did not affect the reproducibility of fragmentation to any relevant degree. The study showed that the interlaboratory exchange and use of mass spectrum library, generated by single-quadrupole (LC--API-MS instruments, is hardly feasible at the moment, even under very carefully standardized conditions.     

Electron ionization mass spectra of acetals of beta-D-glycopyranosylnitromethanes

O-Isopropylidene and O-benzylidene acetals of common 2, 6-anhydro-1-deoxy-1-nitroalditols (beta-D-glyco- pyranosylnitromethanes) derived from D-glucose, D-galactose and D-mannose were studied by electron ionization (EI) mass spectrometry. Fragment pathways of the title compounds were studied using accurate mass measurements, collision-induced dissociation, B/E and B2/E measurements of selected ions and mass spectra of O-deuterium-labelled compound. The fragmentation pathways and some differences found among the mass spectra of stereoisomers are discussed. Noteworthy is the splitting off of the (.)NO(2) radical and elimination of acetone from the molecular ions of 4, 6-O-benzylidene-2, 3-O-isopropylidene-beta-D-galactopyranosylnitromethane. This fragmentation route of relatively high abundance was not observed in the case of D-gluco and D-manno analogues. The differences in the EI mass spectra of stereoisomers may help to provide some information serving for the estimation of the stereochemical arrangement of compounds of this type. Copyright 1999 John Wiley & Sons, Ltd.