The first example of a nitrile hydratase model complex that reversibly binds nitriles

Nitrile hydratase (NHase) is an iron-containing metalloenzyme that converts nitriles to amides. The mechanism by which this biochemical reaction occurs is unknown. One mechanism that has been proposed involves nucleophilic attack of an Fe-bound nitrile by water (or hydroxide). Reported herein is a five-coordinate model compound ([Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+)) containing Fe(III) in an environment resembling that of NHase, which reversibly binds a variety of nitriles, alcohols, amines, and thiocyanate. XAS shows that five-coordinate [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) reacts with both methanol and acetonitrile to afford a six-coordinate solvent-bound complex. Competitive binding studies demonstrate that MeCN preferentially binds over ROH, suggesting that nitriles would be capable of displacing the H(2)O coordinated to the iron site of NHase. Thermodynamic parameters were determined for acetonitrile (DeltaH = -6.2(+/-0.2) kcal/mol, DeltaS = -29.4(+/-0.8) eu), benzonitrile (-4.2(+/-0.6) kcal/mol, DeltaS = -18(+/-3) eu), and pyridine (DeltaH = -8(+/-1) kcal/mol, DeltaS = -41(+/-6) eu) binding to [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) using variable-temperature electronic absorption spectroscopy. Ligand exchange kinetics were examined for acetonitrile, iso-propylnitrile, benzonitrile, and 4-tert-butylpyridine using (13)C NMR line-broadening analysis, at a variety of temperatures. Activation parameters for ligand exchange were determined to be DeltaH(+ +) = 7.1(+/-0.8) kcal/mol, DeltaS(+ +) = -10(+/-1) eu (acetonitrile), DeltaH(+ +) = 5.4(+/-0.6) kcal/mol, DeltaS(+ +) = -17(+/-2) eu (iso-propionitrile), DeltaH(+ +) = 4.9(+/-0.8) kcal/mol, DeltaS(+ +) = -20(+/-3) eu (benzonitrile), and DeltaH(+ +) = 4.7(+/-1.4) kcal/mol DeltaS(+ +) = -18(+/-2) eu (4-tert-butylpyridine). The thermodynamic parameters for pyridine binding to a related complex, [Fe(III)(S(2)(Me2)N(3)(Pr,Pr))](+) (DeltaH = -5.9(+/-0.8) kcal/mol, DeltaS = -24(+/-3) eu), are also reported, as well as kinetic parameters for 4-tert-butylpyridine exchange (DeltaH(+ +) = 3.1(+/-0.8) kcal/mol, DeltaS(+ +) = -25(+/-3) eu). These data show for the first time that, when it is contained in a ligand environment similar to that of NHase, Fe(III) is capable of forming a stable complex with nitriles. Also, the rates of ligand exchange demonstrate that low-spin Fe(III) in this ligand environment is more labile than expected. Furthermore, comparison of [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) and [Fe(III)(S(2)(Me2)N(3)(Pr,Pr))](+) demonstrates how minor distortions induced by ligand constraints can dramatically alter the reactivity of a metal complex.     

An unusual exchange between alkylidyne alkyl and bis(alkylidene) tungsten complexes promoted by phosphine coordination: kinetic, thermodynamic, and theoretical studies

d0 Tungsten alkylidyne alkyl complex (Me3SiCH2)3W(CSiMe3)(PMe3) (4a) was found to undergo a rare, PMe3-promoted exchange with its bis(alkylidene) tautomer (Me3SiCH2)2W(=CHSiMe3)2(PMe3) (4b). Thermodynamic studies of the exchange showed that 4b is favored and gave Keq and the enthalpy and entropy of the equilibrium: DeltaH degrees = -1.8(0.5) kcal/mol and DeltaS degrees = -1.5(1.7) eu. Kinetic studies of the alpha-H migration between 4a and 4b by variable-temperature NMR gave rate constants k1 and k-1 for the reversible reactions and activation enthalpies and entropies: DeltaH1 = 16.2(1.2) kcal/mol and DeltaS1 = -22.3(4.0) eu for the forward reaction (4a --> 4b); DeltaH2 = 18.0(1.3) kcal/mol and DeltaS2 = -20.9(4.3) eu for the reverse reaction (4b --> 4a). Ab initio calculations at the B3LYP level revealed that PMe3 binds with the bis(alkylidene) tautomer relatively more strongly than with the alkylidyne tautomer and thus stabilizes the bis(alkylidene) tautomer.     

The solution structures and dynamics and the solid-state structures of substituted cyclopentadienyltitanium(IV) trifluorides

Organotitanium fluorides (C5Me4R)TiF3 (R = H, Me, Et) sublimate with formation of crystalline dimers. From solution, we obtained crystals of dimers and tetramers. The tetramer [{(C5Me5)TiF3}4] irreversibly dissociates in the solid state to dimers (DeltaH = 8.33 kcal mol(-1)). The variable-temperature (1)H and (19)F NMR spectroscopy measurements of the toluene-d(8) solution of [{(C5Me5)TiF3}2] revealed at 202 K one monomeric, two dimeric (with C2h and Cs symmetry), two tetrameric (with D2 and C2v symmetry), and two trimeric (both C2 symmetry) molecules. With the increase in temperature and dilution of the solution, the composition of the solution shifts to the smaller molecules. The thermodynamic and activation parameters for the reversible dissociation of dimers to monomers in the solution are DeltaH = 9.2 kcal mol(-1), DeltaS = 24.2 cal mol(-1) K(-1), DeltaH(double dagger) = 12.2 kcal mol(-1), DeltaS(double dagger) = 9.7 cal mol(-1) K(-1). The dissociation path with a weakly double-bridged transition-state dimer was proposed. The thermodynamic parameters for the reversible dissociation of the C2v tetramer to the dimers in solution are DeltaH = 7.9 kcal mol(-1) and DeltaS = 26.8 cal mol(-1) K(-1). From both tetramers, the D2 molecule is 0.34(5) kcal mol(-1) lower in enthalpy and 6.5(5) cal mol(-1) K(-1) lower in entropy than the C2v molecule. The structures of both trimers were proposed. The low-temperature 19F NMR spectra of the CDCl3 solution of [{(C5Me5)TiF3}2] are consistent with equilibria of a monomer, two dimers (with C2h and Cs symmetry), and a trimer. The vapor pressure osmometric molecular mass determination of CDCl3 solution of [{(C5Me5)TiF3}2] at 302 K is consistent with the equilibrium of the dimer and the monomer.     

Thermodynamic and kinetic studies of H atom transfer from HMo(CO)3(eta(5)-C5H5) to Mo(N[t-Bu]Ar)3 and (PhCN)Mo(N[t-Bu]Ar)3: direct insertion of benzonitrile into the Mo-H bond of HMo(N[t-Bu]Ar)3 forming (Ph(H)C=N)Mo(N[t-Bu]Ar)3

Synthetic studies are reported that show that the reaction of either H2SnR2 (R = Ph, n-Bu) or HMo(CO)3(Cp) (1-H, Cp = eta(5)-C5H5) with Mo(N[t-Bu]Ar)3 (2, Ar = 3,5-C6H3Me2) produce HMo(N[t-Bu]Ar)3 (2-H). The benzonitrile adduct (PhCN)Mo(N[t-Bu]Ar)3 (2-NCPh) reacts rapidly with H2SnR2 or 1-H to produce the ketimide complex (Ph(H)C=N)Mo(N[t-Bu]Ar)3 (2-NC(H)Ph). The X-ray crystal structures of both 2-H and 2-NC(H)Ph are reported. The enthalpy of reaction of 1-H and 2 in toluene solution has been measured by solution calorimetry (DeltaH = -13.1 +/- 0.7 kcal mol(-1)) and used to estimate the Mo-H bond dissociation enthalpy (BDE) in 2-H as 62 kcal mol(-1). The enthalpy of reaction of 1-H and 2-NCPh in toluene solution was determined calorimetrically as DeltaH = -35.1 +/- 2.1 kcal mol(-1). This value combined with the enthalpy of hydrogenation of [Mo(CO)3(Cp)]2 (1(2)) gives an estimated value of 90 kcal mol(-1) for the BDE of the ketimide C-H of 2-NC(H)Ph. These data led to the prediction that formation of 2-NC(H)Ph via nitrile insertion into 2-H would be exothermic by approximately 36 kcal mol(-1), and this reaction was observed experimentally. Stopped flow kinetic studies of the rapid reaction of 1-H with 2-NCPh yielded DeltaH(double dagger) = 11.9 +/- 0.4 kcal mol(-1), DeltaS(double dagger) = -2.7 +/- 1.2 cal K(-1) mol(-1). Corresponding studies with DMo(CO)3(Cp) (1-D) showed a normal kinetic isotope effect with kH/kD approximately 1.6, DeltaH(double dagger) = 13.1 +/- 0.4 kcal mol(-1) and DeltaS(double dagger) = 1.1 +/- 1.6 cal K(-1) mol(-1). Spectroscopic studies of the much slower reaction of 1-H and 2 yielding 2-H and 1/2 1(2) showed generation of variable amounts of a complex proposed to be (Ar[t-Bu]N)3Mo-Mo(CO)3(Cp) (1-2). Complex 1-2 can also be formed in small equilibrium amounts by direct reaction of excess 2 and 1(2). The presence of 1-2 complicates the kinetic picture; however, in the presence of excess 2, the second-order rate constant for H atom transfer from 1-H has been measured: 0.09 +/- 0.01 M(-1) s(-1) at 1.3 degrees C and 0.26 +/- 0.04 M(-1) s(-1) at 17 degrees C. Study of the rate of reaction of 1-D yielded kH/kD = 1.00 +/- 0.05 consistent with an early transition state in which formation of the adduct (Ar[t-Bu]N)3Mo...HMo(CO)3(Cp) is rate limiting.     

Solvent effects and activation parameters in the competitive cleavage of C-CN and C-H bonds in 2-methyl-3-butenenitrile using [(dippe)NiH]2

The reaction of [(dippe)NiH]2 with 2-methyl-3-butenenitrile (2M3BN) in solvents spanning a wide range of polarities shows significant differences in the ratio of C-H and C-CN activated products. C-H cleavage is favored in polar solvents, whereas C-C cleavage is favored in nonpolar solvents. This variation is attributed to the differential solvation of the transition states, which was further supported through the use of sterically bulky solvents and weakly coordinating solvents. Variation of the temperature of reaction of [(dippe)NiH]2 with 2M3BN in decane and N,N-dimethylformamide (DMF) allowed for the calculation of Eyring activation parameters for the C-CN activation and C-H activation mechanisms. The activation parameters for the C-H activation pathway were DeltaH(double dagger) = 11.4 +/- 5.3 kcal/mol and DeltaS(double dagger) = -45 +/- 15 e.u., compared with DeltaH(double dagger) = 17.3 +/- 2.6 kcal/mol and DeltaS(double dagger) = -29 +/- 7 e.u. for the C-CN activation pathway. These parameters indicate that C-H activation is favored enthalpically, but not entropically, over C-C activation, implying a more ordered transition state for the former.     

Triggering water exchange mechanisms via chelate architecture. Shielding of transition metal centers by aminopolycarboxylate spectator ligands

Paramagnetic effects on the relaxation rate and shift difference of the (17)O nucleus of bulk water enable the study of water exchange mechanisms on transition metal complexes by variable temperature and variable pressure NMR. The water exchange kinetics of [Mn(II)(edta)(H2O)](2-) (CN 7, hexacoordinated edta) was reinvestigated and complemented by variable pressure NMR data. The results revealed a rapid water exchange reaction for the [Mn(II)(edta)(H2O)](2-) complex with a rate constant of k(ex) = (4.1 +/- 0.4) x 10(8) s(-1) at 298.2 K and ambient pressure. The activation parameters DeltaH(double dagger), DeltaS(double dagger), and DeltaV(double dagger) are 36.6 +/- 0.8 kJ mol(-1), +43 +/- 3 J K(-1) mol(-1), and +3.4 +/- 0.2 cm(3) mol(-1), which are in line with a dissociatively activated interchange (I(d)) mechanism. To analyze the structural influence of the chelate, the investigation was complemented by studies on complexes of the edta-related tmdta (trimethylenediaminetetraacetate) chelate. The kinetic parameters for [Fe(II)(tmdta)(H2O)](2-) are k(ex) = (5.5 +/- 0.5) x 10(6) s(-1) at 298.2 K, DeltaH(double dagger) = 43 +/- 3 kJ mol(-1), DeltaS(double dagger) = +30 +/- 13 J K(-1) mol(-1), and DeltaV(double dagger) = +15.7 +/- 1.5 cm(3) mol(-1), and those for [Mn(II)(tmdta)(H2O)](2-) are k(ex) = (1.3 +/- 0.1) x 10(8) s(-1) at 298.2 K, DeltaH(double dagger) = 37.2 +/- 0.8 kJ mol(-1), DeltaS(double dagger) = +35 +/- 3 J K(-1) mol(-1), and DeltaV(double dagger) = +8.7 +/- 0.6 cm(3) mol(-1). The water containing species, [Fe(III)(tmdta)(H2O)](-) with a fraction of 0.2, is in equilibrium with the water-free hexa-coordinate form, [Fe(III)(tmdta)](-). The kinetic parameters for [Fe(III)(tmdta)(H2O)](-) are k(ex) = (1.9 +/- 0.8) x 10(7) s(-1) at 298.2 K, DeltaH(double dagger) = 42 +/- 3 kJ mol(-1), DeltaS(double dagger) = +36 +/- 10 J K(-1) mol(-1), and DeltaV(double dagger) = +7.2 +/- 2.7 cm(3) mol(-1). The data for the mentioned tmdta complexes indicate a dissociatively activated exchange mechanism in all cases with a clear relationship between the sterical hindrance that arises from the ligand architecture and mechanistic details of the exchange process for seven-coordinate complexes. The unexpected kinetic and mechanistic behavior of [Ni(II)(edta')(H2O)](2-) and [Ni(II)(tmdta')(H2O)](2-) is accounted for in terms of the different coordination number due to the strong preference for an octahedral coordination environment and thus a coordination equilibrium between the water-free, hexadentate [M(L)](n+) and the aqua-pentadentate forms [M(L')(H2O)](n+) of the Ni(II)-edta complex, which was studied in detail by variable temperature and pressure UV-vis experiments. For [Ni(II)(edta')(H2O)](2-) (CN 6, pentacoordinated edta) a water substitution rate constant of (2.6 +/- 0.2) x 10(5) s(-1) at 298.2 K and ambient pressure was measured, and the activation parameters DeltaH(double dagger), DeltaS(double dagger), and DeltaV(double dagger) were found to be 34 +/- 1 kJ mol(-1), -27 +/- 2 J K(-1) mol(-1), and +1.8 +/- 0.1 cm(3) mol(-1), respectively. For [Ni(II)(tmdta')(H2O)](2-), we found k = (6.4 +/- 1.4) x 10(5) s(-1) at 298.2 K, DeltaH(double dagger) = 22 +/- 4 kJ mol(-1), and DeltaS(double dagger) = -59 +/- 5 J K(-1) mol(-1). The process is referred to as a water substitution instead of a water exchange reaction, since these observations refer to the intramolecular displacement of coordinated water by the carboxylate moiety in a ring-closure reaction.     

Reversible adduct formation of trimethylgallium and trimethylindium with ammonia

We have used gas-phase infrared spectroscopy to determine the equilibrium constant (K(p)) for the formation of (CH(3))(3)Ga:NH(3) and (CH(3))(3)In:NH(3) adducts in the 80-230 degrees C range. In this temperature range, and at reactant concentrations typically used for metal organic chemical vapor deposition, the dominant chemical reaction is reversible adduct formation/dissociation. Reaction enthalpies and entropies are extracted from the temperature dependence of K(p), yielding DeltaH(Ga) = -16.3 +/- 0.5 kcal/mol, DeltaS(Ga) = -32.4 +/- 1.2 eu, and DeltaH(In) = -15.0 +/- 0.6 kcal/mol, DeltaS(In) = -30.3 +/- 1.4 eu. These results will aid current and future modeling efforts, as well as advance our general understanding of the group-III nitride deposition process.     

Thermodynamics of Inter- and Intramolecular Hydrogen Bonding in (Diphosphine)platinum(II) Diolate Complexes and Its Role in Carbohydrate Complexation Regioselectivity

Thermodynamic data are reported for intermolecular hydrogen-bonding association of 1 and 2 equiv of phenol with [1,3-bis(diphenylphosphino)propane](phenylethane-1,2-diolato)platinum(II) ((dppp)Pt(Ped)) in dichloromethane solution: = -7.0 +/- 0.1 kcal/mol, = -7.7 +/- 0.4 kcal/mol, = -11.3 +/- 0.4 eu, and = -17.8 +/- 1.2 eu. For comparison, the thermodynamics for hydrogen bonding of phenol to triphenylphosphine oxide in dichloromethane were also determined: DeltaH degrees = -5.1 +/- 0.3 kcal/mol; DeltaS degrees = -8.8 +/- 1.0 eu. Competitive coordination exchange reactions have been used to determine the apparent intramolecular hydrogen bond strengths in (dppp)Pt(1,2-O,O'-glycerolate) and (dppp)Pt(1,2-O,O'-butane-1,2,4-triolate) in both dichloromethane (DeltaG(313) = -2.05 +/- 0.05 and -2.52 +/- 0.06 kcal/mol, respectively) and pyridine (DeltaG(313) = -0.62 +/- 0.03 and -0.82 +/- 0.03 kcal/mol, respectively). Based on these findings, the role of hydrogen-bonding interactions in determining the regioselectivities of complexation of carbohydrates to diphosphine Pt(II) is discussed.     

Hydroxylation of phenolic compounds by a peroxodicopper(II) complex: further insight into the mechanism of tyrosinase

The dicopper(I) complex [Cu2(MeL66)]2+ (where MeL66 is the hexadentate ligand 3,5-bis-{bis-[2-(1-methyl-1H-benzimidazol-2-yl)-ethyl]-amino}-meth ylbenzene) reacts reversibly with dioxygen at low temperature to form a mu-peroxo adduct. Kinetic studies of O2 binding carried out in acetone in the temperature range from -80 to -55 degrees C yielded the activation parameters DeltaH1(not equal) = 40.4 +/- 2.2 kJ mol(-1), DeltaS1)(not equal) = -41.4 +/- 10.8 J K(-1) mol(-1) and DeltaH(-1)(not equal) = 72.5 +/- 2.4 kJ mol(-1), DeltaS(-1)(not equal) = 46.7 +/- 11.1 J K(-1) mol(-1) for the forward and reverse reaction, respectively, and the binding parameters of O2 DeltaH degrees = -32.2 +/- 2.2 kJ mol(-1) and DeltaS degrees = -88.1 +/- 10.7 J K(-1) mol(-1). The hydroxylation of a series of p-substituted phenolate salts by [Cu2(MeL66)O2]2+ studied in acetone at -55 degrees C indicates that the reaction occurs with an electrophilic aromatic substitution mechanism, with a Hammett constant rho = -1.84. The temperature dependence of the phenol hydroxylation was studied between -84 and -70 degrees C for a range of sodium p-cyanophenolate concentrations. The rate plots were hyperbolic and enabled to derive the activation parameters for the monophenolase reaction DeltaH(not equal)ox = 29.1 +/- 3.0 kJ mol(-1), DeltaS(not equal)ox = -115 +/- 15 J K(-1) mol(-1), and the binding parameters of the phenolate to the mu-peroxo species DeltaH degrees(b) = -8.1 +/- 1.2 kJ mol(-1) and DeltaS degrees(b) = -8.9 +/- 6.2 J K(-1) mol(-1). Thus, the complete set of kinetic and thermodynamic parameters for the two separate steps of O2 binding and phenol hydroxylation have been obtained for [Cu2(MeL66)]2+.     

Pyridine ligand rotation in self-assembled trigonal prisms. Evidence for intracage solvent vapor bubbles

The rate of interconversion of the two inequivalent edges of the pyridine rings in the trigonal prism 3c, self-assembled from 3 equiv of the star connector, tetrakis[4-(4-pyridylethynyl)phenyl]cyclobutadienecyclopentadienylcobalt, and 6 equiv of a platinum linker, cis-(Me3P)2Pt(2+) 2 TfO(-), was determined by DNMR in nitromethane. It exhibits a highly unusual bilinear Eyring plot. In the low temperature regime, the activation enthalpy DeltaH(double dagger) is approximately 12 kcal/mol and an activation entropy DeltaS(double dagger) ranges from approximately -15 to approximately 0 cal/mol x K as a function of the nature and concentration of the anions present. The reaction is attributed to hindered rotation of the pyridine rings about the Pt-N bond, facilitated by a tight pairing with a counterion. Above a counterion-dependent limiting temperature, DeltaH(double dagger) and DeltaS(double dagger) change abruptly to approximately 35 kcal/mol and approximately 60 cal/mol x K, respectively. The changes largely compensate, such that the reactions have comparable rates in the two regimes, both amenable to DNMR measurement, but their mechanisms clearly differ. Several kinetic models for the involvement of ion pairing equilibria fit the observed data nearly equally well, and they all contain a reaction step with high DeltaH(double dagger) and DeltaS(double dagger) values in the high-temperature regime. Its mechanism is proposed to involve a counterion-assisted reversible dissociation of one or two adjacent Pt-N bonds, followed by nearly free rotation of the terminal pyridine ring or rings and subsequent bond reclosure, which is similar to the last presumed step in the initial prism assembly. An interpretation of the very high DeltaS(double dagger) value is suggested by molecular dynamics calculations: at equilibrium, there is a bubble of gaseous nitromethane solvent inside the prism, and it collapses when the prism opens as the transition state is reached. A simple calculation of the entropy of cavitation provides quantitative support for this tentative proposal. The presence of such voids might be generally important for the formation and properties of self-assembled cages.     

Temperature-dependent coordination of phosphine to five-coordinate alkenylruthenium complexes

The red, five-coordinate complexes Ru(CO)Cl(PPh(3))2(CH=CHPh) and [Ru(CO)Cl(PPh(3))2]2(mu-CH=CHC(6)H(4)CH=CH) undergo reversible coordination of PPh(3) at low temperature to produce the pale yellow, six-coordinate complexes Ru(CO)Cl(PPh(3))3(CH=CHPh) and [Ru(CO)Cl(PPh(3))3]2(mu-CH=CHC(6)H(4)CH=CH). X-ray crystal structures of the latter complex and of the hydride complex RuH(CO)Cl(PPh(3))3 were obtained. 1H and 31P NMR spectra between 20 and -70 degrees C exhibit large changes in both equilibrium constants and dynamic effects. Thermodynamic parameters, DeltaH = -17.5 +/- 2.0 kcal/mol and DeltaS = -57.5 +/- 7.6 eu, were obtained for PPh(3) coordination to the monoruthenium complex, and activation parameters, DeltaH = 20.6 +/- 0.7 kcal/mol and DeltaS = 41.6 +/- 2.0 eu, were obtained for the reverse decoordination. Coordination of PPh(3) was not observed upon cooling of the shorter bridged complex, [Ru(CO)Cl(PPh(3))2]2(mu-CH=CHCH=CH).     

The rate of O2 and CO binding to a copper complex, determined by a "flash-and-trap" technique, exceeds that for hemes

The observation and fast time-scale kinetic determination of a primary dioxygen-copper interaction have been studied. The ability to photorelease carbon monoxide from [Cu(I)(tmpa)(CO)](+) in mixtures of CO and O(2) in tetrahydrofuran (THF) between 188 and 218 K results in the observable formation of a copper-superoxide species, [Cu(II)(tmpa)(O(2)(-))](+) lambda(max) = 425 nm. Via this "flash-and-trap" technique, temperature-dependent kinetic studies on the forward reaction between dioxygen and [Cu(I)(tmpa)(thf)](+) afford activation parameters DeltaH = 7.62 kJ/mol and DeltaS = -45.1 J/mol K. The corresponding reverse reaction proceeds with DeltaH = 58.0 kJ/mol and DeltaS = 105 J/mol K. Overall thermodynamic parameters are DeltaH degrees = -48.5 kJ/mol and DeltaS degrees = -140 J/mol K. The temperature-dependent data allowed us to determine the room-temperature second-order rate constant, k(O2) = 1.3 x 10(9) M(-1) s(-1). Comparisons to copper and heme proteins and synthetic complexes are discussed.     

CASSCF and CASPT2 calculations on the cleavage and ring inversion of bicyclo[2.2.0]hexane find that these reactions involve formation of a common twist-boat diradical intermediate.

(6/6)CASSCF and CASPT2/6-31G calculations have been performed to understand the experimental finding of Goldstein and Benzon (J. Am. Chem. Soc. 1972, 94, 5119) that exo-bicyclo[2.2.0]hexane-d(4) (1b) undergoes ring inversion to form endo-bicyclo[2.2.0]hexane-d(4) (4b) faster than it undergoes cleavage to form cis,trans-1,5-hexadiene-d(4) (3b). Goldstein and Benzon also found that the latter reaction, which must occur via a chairlike transition structure (TS), is much faster than cleavage of 1b to trans,trans-1,5-hexadiene-d(4) (2b) via a boatlike TS. Our calculations reveal that all three of these reactions involve ring opening of 1, through a boat diradical TS (BDTS), to form a twist-boat diradical intermediate (TBDI). TBDI can reclose to 4 via a stereoisomeric boat diradical TS (BDTS'), or TBDI can cleave, either via a half-chair diradical TS (HCDTS) to form 3 or via a boat TS (BTS) to form 2. The calculated values of DeltaH(++) = 34.6 kcal/mol, DeltaS(++) = -1.6 eu, and DeltaH(++) = 35.2 kcal/mol, DeltaS(++) = 2.0 eu for ring inversion of 1 to 4 and cleavage of 1 to 3, respectively, are in excellent agreement with the values measured by Goldstein and Benzon. The higher value of DeltaH(++) = 37.6 kcal/mol, computed for cleavage of TBDI to 2, is consistent with the experimental finding that very little 2b is formed when 1b is pyrolyzed. The relationships between BDTS, HCDTS, and BTS and the chair and boat Cope rearrangement TSs (CCTS and BCTS) are discussed.     

Thermodynamics of light-induced and thermal degradation of bacteriochlorins in reaction center protein of photosynthetic bacteria

The rate constants of thermal (irreversible) damage of bacteriochlorin pigments (bacteriochlorophyll monomer [B], bacteriochlorophyll dimer [P] and bacteriopheophytine [H]) in reaction center [RC] protein from the photosynthetic bacterium Rhodobacter sphaeroides were studied in the dark and during intense (400 mW x cm(-2)) laser light excitation (wavelengths 488 and 515 nm) under deoxygenated conditions. While the kinetics of degradation of P and B were monoexponential, the decay kinetics of H were overlapped by an initial lag phase at elevated (>40 degrees C) temperature. This is explained by removal of the central metal ion from the bacteriochlorophylls as part of their degradation processes. At all temperatures, the rates of damage were very similar for all bacteriochlorin pigments and were larger in the light than in the dark. The logarithm of the rate constant of pigment degradation and loss of photochemistry as a function of reciprocal (absolute) temperature (Arrhenius/Eyring plot) showed single phase in the light and double phases in the dark. Below 20 degrees C, the rate of pigment degradation in the RC decreased so dramatically in the dark that it became limited by the natural degradation process of bacteriochlorophyll measured in solution. The function of loss of photochemistry in the dark was also biphasic and had a break point at 40 degrees C. The damage in the dark required high enthalpy change (DeltaH(++) = 64 kcal/mol for P and DeltaH(++) = 60 kcal/mol for B) and entropy increase (T x DeltaS(++) = 38 kcal/mol for P and T x DeltaS(++) = 34 kcal/mol for B at T = 300 K), whereas significantly smaller enthalpy change (DeltaH(++) = 21 kcal/mol for P and B and DeltaH(++) = 13 kcal/mol for H) and practically no (T x DeltaS(++) = -1 kcal/mol for P and B at T = 300 K) or small (T x DeltaS(++) = -9 kcal/mol for H at T = 300 K) entropy change was needed in the light. The thermodynamic parameters of activation reveal major steps common in the degradation of all bacteriochlorin pigments: ring opening reactions at C5 or C20 meso-bridges (or both) and breaking/removal of the phytyl chain. Their contribution in the degradation is probably reflected in the observed enthalpy/entropy compensation at an almost constant (DeltaG(++) = 22-26 kcal/mol at T = 300 K) free energy change of activation.     

Conformational analysis of indole alkaloids corynantheine and dihydrocorynantheine by dynamic 1H NMR spectroscopy and computational methods: steric effects of ethyl vs vinyl group

1H NMR (400 MHz) spectra of the indole alkaloid dihydrocorynantheine recorded at room temperature show the presence of two conformers near coalescence. Low temperature 1H NMR allowed characterization of the conformational equilibrium, which involves rotation of the 3-methoxypropenoate side chain. Line-shape analysis yielded enthalpy of activation DeltaH(double dagger) = 71 +/- 6 kJ/mol, and entropy of activation DeltaS(double dagger) = 33 +/- 6 J/mol.K. The major and minor conformation contains the methyl ether group above and below the plane of the ring, respectively, as determined by low-temperature NOESY spectra, with free energy difference DeltaG degrees = 1.1 kJ/mol at -40 degrees C. In contrast to dihydrocorynantheine, the corresponding rotamers of corynantheine are in the fast exchange limit at room temperature. The activation parameters determined for corynantheine were DeltaH(double dagger) = 60 +/- 6 kJ/mol and DeltaS(double dagger) = 24 +/- 6 J/mol.K, with DeltaG degrees = 1.3 kJ/mol at -45 degrees C. The difference in the exchange rates of the rotamers of corynantheine and dihydrocorynantheine (respectively, 350 s(-1) and 9 s(-1) at 0 degrees C) reflects the difference in the steric bulk of the vinyl and the ethyl group. The conformational equilibria involving the side chain rotation as well as inversion of the bridgehead nitrogen in corynantheine and dihydrocorynantheine was studied by force-field (Amber and MMFF) and ab initio (density-functional theory at the B3LYP/6-31G level) computational methods, the results of which were in good agreement with the 1H NMR data. However, the calculations identified the rotamers as essentially isoenergetic, the experimental energy differences being to small to be reproduced exactly by the theory. Comparison of density-functional and force-field calculations with experimental results identified Amber as giving the most accurate results in the present case.     

The amide rotational barriers in picolinamide and nicotinamide: NMR and ab initio studies

Pyridine carboxamides are a class of medicinal agents with activity that includes the reduction of iron-induced renal damage, the regulation of nicotinamidase activity, and radio- and chemosensitization. Such pharmacological activities, and the prevalence of the carboxamide moiety and the importance of amide rotations in biology, motivate detailed investigation of energetics in these systems. In this study, we report the use of dynamic nuclear magnetic resonance to measure the amide rotational barriers in the pyridine carboxamides picolinamide and nicotinamide. The activation enthalpies and entropies of DeltaH++ = 12.9 +/- 0.3 kcal/mol and DeltaS++ = -7.7 +/- 0.9 cal/mol K for nicotinamide and DeltaH++ = 18.3 +/- 0.4 kcal/mol and DeltaS++ = +1.3 +/- 1.0 cal/mol K for picolinamide report a substantial energetic difference for these regioisomers. Ab initio calculations of the rotational barriers are in good agreement with the experimentally determined values and help partition the 5.4 kcal/mol enthalpy difference into its major contributions. Of principal importance are the variations in steric interactions in the ground states of picolinamide and nicotinamide, superior pi electron donation from the pyridine ring in the transition state of nicotinamide, and an intramolecular hydrogen bond in the ground state of picolinamide.     

Unusual equilibria involving group 4 amides, silyl complexes, and silyl anions via ligand exchange reactions

Silyl anion SiButPh2- (2) was found to substitute an amide ligand in Zr(NMe2)4 (3) to give the disilyl complex Zr(NMe2)3(SiButPh2)2- (1a) and Zr(NMe2)5- (1b) in THF. The reaction is reversible, and nucleophilic amide NMe2- attacks the Zr-SiButPh2 bonds in 1a or Zr(NMe2)3(SiButPh2) in the reverse reaction, leading to an unusual ligand exchange equilibrium 2 3 + 2 2 right harpoon over left harpoon 1a + 1b (eq 1). The silyl anion 2 selectively attacks the -N(SiMe3)2 ligand in Zr(NMe2)3[N(SiMe3)2] (6) to give 1a and N(SiMe3)2- (7). Reversible reaction occurs as well, where 7 selectively substitutes the silyl ligand in Zr(NMe2)3(SiButPh2)2- (1a) or Zr(NMe2)3(SiButPh2), giving the equilibrium 6 + 2 2 right harpoon over left harpoon 1a + 7 (eq 3). The thermodynamics of these equilibria has been studied: For eq 1, DeltaH degrees = -8.3(0.2) kcal/mol, DeltaS degrees = -23.3(0.9) eu, and DeltaG degrees 298K = -1.4(0.5) kcal/mol at 298 K; for eq 3, DeltaH degrees = -1.61(0.12) kcal/mol, DeltaS degrees = -2.6(0.5) eu, and DeltaG degrees 298K = -0.8(0.3) kcal/mol. In both equilibria, the enthalpy changes for the forward reactions outweigh the entropy changes, and therefore the substitutions of amide ligands in Zr(NMe2)4 (3) and Zr(NMe2)3[N(SiMe3)2] (6) to afford the disilyl complex 1a are thermodynamically favored. The following equilibria were also observed and studied: Zr(NMe2)3[N(SiMe3)2] (6) + Si(SiMe3)3- (9) right harpoon over left harpoon Zr(NMe2)3[Si(SiMe3)3] (10) + N(SiMe3)2- (7) and Zr(NMe2)4 (3) + 9 right harpoon over left harpoon 10 + Zr(NMe2)5- (1b).     

Oxidative reactivity difference among the metal oxo and metal hydroxo moieties: pH dependent hydrogen abstraction by a manganese(IV) complex having two hydroxide ligands

Clarifying the difference in redox reactivity between the metal oxo and metal hydroxo moieties for the same redox active metal ion in identical structures and oxidation states, that is, M(n+)O and M(n+)-OH, contributes to the understanding of nature's choice between them (M(n+)O or M(n+)-OH) as key active intermediates in redox enzymes and electron transfer enzymes, and provides a basis for the design of synthetic oxidation catalysts. The newly synthesized manganese(IV) complex having two hydroxide ligands, [Mn(Me(2)EBC)(2)(OH)(2)](PF(6))(2), serves as the prototypic example to address this issue, by investigating the difference in the hydrogen abstracting abilities of the Mn(IV)O and Mn(IV)-OH functional groups. Independent thermodynamic evaluations of the O-H bond dissociation energies (BDE(OH)) for the corresponding reduction products, Mn(III)-OH and Mn(III)-OH(2), reveal very similar oxidizing power for Mn(IV)O and Mn(IV)-OH (83 vs 84.3 kcal/mol). Experimental tests showed that hydrogen abstraction proceeds at reasonable rates for substrates having BDE(CH) values less than 82 kcal/mol. That is, no detectable reaction occurred with diphenyl methane (BDE(CH) = 82 kcal/mol) for both manganese(IV) species. However, kinetic measurements for hydrogen abstraction showed that at pH 13.4, the dominant species Mn(Me(2)EBC)(2)(O)(2), having only Mn(IV)O groups, reacts more than 40 times faster than the Mn(IV)-OH unit in Mn(Me(2)EBC)(2)(OH)(2)(2+), the dominant reactant at pH 4.0. The activation parameters for hydrogen abstraction from 9,10-dihydroanthracene were determined for both manganese(IV) moieties: over the temperature range 288-318 K for Mn(IV)(OH)(2)(2+), DeltaH(double dagger) = 13.1 +/- 0.7 kcal/mol, and DeltaS(double dagger) = -35.0 +/- 2.2 cal K(-1) mol(-1); and the temperature range 288-308 K for for Mn(IV)(O)(2), DeltaH(double dagger) = 12.1 +/- 1.8 kcal/mol, and DeltaS(double dagger) = -30.3 +/- 5.9 cal K(-1) mol(-1).     

Mechanistic investigations of the palladium-catalyzed aerobic oxidative kinetic resolution of secondary alcohols using (-)-sparteine

The mechanistic details of the Pd(II)/(-)-sparteine-catalyzed aerobic oxidative kinetic resolution of secondary alcohols were elucidated, and the origin of asymmetric induction was determined. Saturation kinetics were observed for rate dependence on [(-)-sparteine]. First-order rate dependencies were observed for both the Pd((-)-sparteine)Cl(2) concentration and the alcohol concentration at high and low [(-)-sparteine]. The oxidation rate was inhibited by addition of (-)-sparteine HCl. At low [(-)-sparteine], Pd-alkoxide formation is proposed to be rate limiting, while at high [(-)-sparteine], beta-hydride elimination is proposed to be rate determining. These conclusions are consistent with the measured kinetic isotope effect of k(H)/k(D) = 1.31 +/- 0.04 and a Hammett rho value of -1.41 +/- 0.15 at high [(-)-sparteine]. Calculated activation parameters agree with the change in the rate-limiting step by increasing [(-)-sparteine] with DeltaH(++) = 11.55 +/- 0.65 kcal/mol, DeltaS(++) = -24.5 +/- 2.0 eu at low [(-)-sparteine], and DeltaH(++) = 20.25 +/- 0.89 kcal/mol, DeltaS() = -5.4 +/- 2.7 eu at high [(-)-sparteine]. At high [(-)-sparteine], the selectivity is influenced by both a thermodynamic difference in the stability of the diastereomeric Pd-alkoxides formed and a kinetic beta-hydride elimination to maximize asymmetric induction. At low [(-)-sparteine], the selectivity is influenced by kinetic deprotonation, resulting in lower k(rel) values. A key, nonintuitive discovery is that (-)-sparteine plays a dual role in this oxidative kinetic resolution of secondary alcohols as a chiral ligand on palladium and as an exogenous chiral base.     

Coordination-driven face-directed self-assembly of trigonal prisms. Face-based conformational chirality

The coordination-driven self-assembly of four different trigonal prisms from 3 equiv of one of four different tetrapyridyl star connectors and 6 equiv of a platinum linker dication in nitromethane is presented. This face-directed approach affords high yields without template assistance. The prisms have been characterized by multinuclear and DOSY NMR and dual ESI-FT-ICR mass spectrometry. The use of a conformationally chiral star connector leads to a conformationally chiral prism when connector arm ends attached to a vertex have a strongly correlated twist sense and chirality is communicated across polyhedral faces, edges, and vertices. Molecular mechanics results suggest that in the smallest prism 3d collective effects dominate and the all-P and all-M conformers are strongly favored. NMR data prove that the two edges of the pyridine rings in the triflate salts of 3a-3d are distinct. An Eyring plot of rates obtained from line-shape analysis and 1-D EXCHSY NMR yields an activation enthalpy DeltaH(double dagger) of approximately 12 kcal/mol and activation entropy DeltaS(double dagger) of approximately -15 cal/mol x K for the edge interconversion process, compatible with pyridine rotation around the Pt-N bond. For 3c, this behavior is observed only up to approximately 318 K. At higher temperatures, the Eyring plot is again linear but follows a very different straight line, with a DeltaH(double dagger) of approximately 35 kcal/mol and DeltaS(double dagger) of approximately 60 cal/mol x K. This highly unusual result is further investigated and discussed in the following companion paper.