Hydrogen Bonding Character Between the Glycine and BF4^-

The hydrogen bonding character between the BF4- and glycine was theoretically studied at the level of B3LYP/6-31＋G^＊, single point energies were performed at the level of B3LYP/6-311＋＋G^＊＊. The relevant geometrical characteristics, energy properties, as well as the characters of the intramolecular hydrogen bonds have been studied. Atoms in molecule theory topological analysis indicated the （3,-1） critical points for hydrogen bonds. In addition, the electron density and Laplacian were in the range suggested for the hydrogen bonds. Especially, the changes of atomic charge, hydrogen upon hydrogen bonds formation dipole moment, enegry as well as volume of the were systemitically discussed.     

二水合甘氨酸两性离子复合体的结构和性能的理论研究

采用理论计算方法B3LYP, 在6-31++G**基组水平研究使甘氨酸质子化所需的最少水分子数目, 然后讨论水合两性离子复合体的结构和性能, 进而计算了二水合甘氨酸中性分子复合体(2W-GN)到二水合甘氨酸两性离子复合体(2W-GZ)的过渡态, 得到如下结论: (1)两个水分子可以使甘氨酸质子化, 能够形成稳定的二水合两性离子复合体. (2)甘氨酸与水分子之间通过氢键相互作用, 结合能较大, 复合体稳定; 在二水合甘氨酸复合体中, 水合甘氨酸中性分子比水合甘氨酸两性离子稳定. (3)由2W-GN到2W-GZ过程的反应活化能和氢键键能相近.     

5-氟尿嘧啶和5-氯尿嘧啶及其互变异构体的理论计算研究

采用HF/3-21G方法, 对6种气相和水相中可能存在的5-氟尿嘧啶(和5-氯尿嘧啶)互变异构体进行了构象分析.采用B3LYP/6-311＋G**方法对处于优势构象时的各互变异构体进行了几何全优化, 并计算出它们的总能量、焓、熵、吉布斯自由能. Onsager反应场溶剂模型用于水相的计算. 计算结果表明, 5-氟尿嘧啶和5-氯尿嘧啶在气相中和水相中主要以双酮形式存在. 5-氟尿嘧啶和5-氯尿嘧啶的熵效应小, 对互变异构平衡没有显著的影响, 而焓变对互变异构产生了主要的影响. 讨论了水溶剂化作用对异构体的能量、电荷分布和偶极矩的影响. 溶剂化自由能与异构体的气相偶极矩存在相关性. 另外, 详细地将5-氟尿嘧啶和5-氯尿嘧啶与尿嘧啶进行了对比, 获得三者最稳定异构体间电子结构异同的有用信息.     

DNA与5-氟尿嘧啶相互作用的电化学和谱学研究

以电位控制共价组装法制得的DNA修饰电极为工作电极, 采用循环伏安和方波脉冲伏安法, 以亚甲蓝(MB)为电活性指示剂, 研究了非电活性抗癌药物5-氟尿嘧啶(5-FU)与DNA的相互作用, 还结合紫外-可见光谱进一步研究了这种相互作用. 循环伏安测试结果表明: 5-FU与DNA在电极表面反应的过程为可逆电化学反应-化学反应偶合(EC)过程. 当扫描速度较低时, EC反应是扩散控制过程; DNA与电活性物质MB通过静电吸附相互结合, 抗癌药物5-FU与DNA通过插入作用相互结合. 本研究对于遗传工程中以DNA为靶标的药物设计有重要的意义.     

抗肿瘤药物5-氟尿嘧啶与人血清白蛋白相互作用的热力学研究

在298.15 K下,根据本结合过程的假设和Langmuir结合理论, 用等温滴定微量热和圆二色谱分析法研究了抗肿瘤药物5-氟尿嘧啶(5-FU)与人血清白蛋白(HSA)的相互作用. 研究结果表明, 蛋白质(HSA)与药物配体5-氟尿嘧啶的相互作用存在两类结合位点. 第一类结合, 结合位点数N＝71±0.1, 结合常数 K＝(1.46±0.016)×10⁵ L•mol^－1, 结合焓ΔH＝(39.61±0.220) kJ•mol^－1, 结合熵ΔS＝(231.68±0.025) J•mol^－1•K^－1, 结合自由能ΔG＝(－29.48±0.030) kJ•mol^－1. 结合过程为熵驱动过程, 疏水相互作用是过程的主要推动力;第二类结合, 结合位点数N＝140±0.2, 结合常数 K＝(1.49±0.032)×10⁵ L•mol^－1, 结合焓ΔH＝(－19.31±0.103) kJ•mol^－1, 结合熵ΔS＝(34.30±0.055) J•mol^－1•K^－1, 结合自由能ΔG＝(－29.53±0.041) kJ•mol^－1, 结合过程为焓-熵协同驱动过程, 氢键和静电相互作用是过程的主要推动力. 圆二色谱分析结果表明, 在两类结合过程中, 药物5-氟尿嘧啶(5-FU)的作用致使蛋白质(HSA)二级结构单元的相对含量发生了变化.     

HArF和HNO二聚体相互作用氢键的理论研究

The hydrogen bonding interaction of 1:1 dimer formed between HNO and HArF molecule has been completely investigated in the present study using Second-order M?ller-Plesset Perturbation (MP2) method in conjunction with 6-311+G**, 6-311++G** and 6-311++G(2d,2p) basis sets. The standard and CP-corrected calculations have been employed to determine the equilibrium structures, the vibrational frequencies and interaction energies. The interaction energies of the dimers were also calculated at G2MP2 level. Two stable structures are found as the minima. Dimer I(H···F)is a five-membered cyclic hydrogen bonded structure and is more stable than the Dimer II(H···O). The blue-shifted N-H···F hydrogen bond is confirmed with standard and CP-corrected calculations by the MP2 and DFT methods in conjunction with different basis sets. The results obtained at MP2 in conjunction with different basis sets show there is a red-shifted hydrogen bond (Ar-H···O) in the Dimer II(H···O). The topological and electronic properties, the origin of red- and blue-shifted hydrogen bonds were investigated at MP2/6-311++G(2d,2p) with CP corrected calculations. From the NBO analysis, the reasonable explanations for the red- and blue-shifted hydrogen bonds were proposed.     

Theoretical Studies on the Hydrogen Bond Transfer and Proton Transfer between Anamorphoses of the Dihydrated Glycine Complex

The conversion between anamorphoses of the dihydrated glycine complex was studied by means of B3LYP/6-31++G**. It was found that proton transfer was accompanied by hydrogen bond transfer in the process of conversion between different kinds of anamorphoses. With proton transfer, the electrostatic action was notably increased and the hydrogen-bonding action was evidently strengthened when the dihydrated neutral glycine complex converts into dihydrated zwitterionic glycine complex. The activation energy required for hydrogen bond transfer between dihydrated neutral glycine complexes is very low (6.32 kJ·mol-1); however, the hydrogen bond transfer between dihydrated zwitterionic glycine complexes is rather difficult with the required activation energy of 13.52 kJ·mol-1 due to the relatively strong electrostatic action. The activation energy required by proton transfer is at least 27.33 kJ·mol-1, higher than that needed for hydrogen bond transfer. The activation energy for either hydrogen bond transfer or proton transfer is in the bond-energy scope of medium-strong hydrogen bond, so the four kinds of anamorphoses of the dihydrated glycine complex could convert mutually.     

木犀草素与胞嘧啶相互作用的理论研究

采用密度泛函理论中的B3LYP方法,在6-31＋G＊基组水平上对木犀草素、胞嘧啶、木犀草素-胞嘧啶复合物进行结构优化和振动频率分析,得到了12种稳定复合物.并应用分子中的原子理论（AIM）分析、自然键轨道（NBO）理论分析得到复合物氢键性质和特征.通过基组重叠误差（BSSE）校正后的相互作用能、成键临界点电荷密度、二阶...     

Theoretical Studies on the Stabilities and Hydrogen Bond Actions of （H2O）n Clusters

1 INTRODUCTION In the latest ten years, the structure and function of water clusters have captured the interest of chemists. One of the most important study objects in water cluster is to describe the behavior of water so- lution quantitatively at molecule level, which will pave the way for the solving of some environmental and other scientific problems, such as the formation of acid rain and nucleation mechanism of little water drop. Besides, weak interaction in water clusters could be al…     

三接触弯曲构型的蓝移氢键CH3…Y的理论研究

运用量子化学从头算方法, 在MP2/6-311＋＋G(d,p), MP2/6-311＋＋G(2df,2p), MP2/6-311＋＋G(3df,3pd)和QCISD/6-311＋＋G(d,p)水平上, 研究了CH₃F, CH₃Cl和CH₃Br作为质子给体与Cl^－, Br^－作为质子接受体形成的氢键CH₃…Y. 计算结果表明: 6种复合物中C—H键收缩, 伸缩振动频率增大, 形成蓝移氢键. 分子中原子(Atoms in Molecules, AIM)分析表明, 这些复合物的电子密度拓扑性质与普通氢键有着本质的不同, 在Y…H之间不存在键临界点, 而在Y与C之间存在键临界点, 因此这些相互作用严格地不能称为氢键. 自然键轨道(Natural bond orbital, NBO)分析表明, 在这些复合物中弯曲的CH…Y的特殊结构使得分子间超共轭n(Y)®σ*(C—H)减小到可以忽略; 质子接受体的电子密度没有转移到σ*(C—H)上, 而是转移到了σ*(C—X) (X＝F, Cl, Br)上; 存在一定程度的重杂化; 分子内超共轭相互作用减小使得σ*(C—H)的电子密度减少. 这些因素共同导致C—H伸缩振动频率的蓝移.     

Quantum Study on the Hydrogen Bonding Interaction of Luteolin-（CH_3OH）_n

The optimized geometries and vibration frequencies of luteolin,methanol and luteolin-(CH3OH)n complexes have been investigated by density functional theory using B3LYP method.Four stable luteolin-CH3OH complexes,six stable luteolin-(CH3OH)2 complexes and four stable luteolin-(CH3OH)3 complexes have been obtained.The theories of atoms in molecules(AIM) and natural bond orbital(NBO) have been used to analyze the hydrogen bonds of these compounds,and their interaction energies corrected by basis set superposition error are between-8.046 and-76.124 kJ/mol.The calculation results indicate strong hydrogen bonding interactions in the luteolin-(CH3OH)n complexes.Then the nuclear magnetic resonance(NMR) and electronic absorption spectrum of luteolin have been calculated,and the results are in agreement with the experimental data.     

Study on the Intramolecular Hydrogen Bonds of Dibenzofurans, Xanthones and Anthraquinones with One or Two Positions Substituted by Hydroxyls

<正>The thermodynamic properties of dibenzofurans (DFs), xanthones (XTs) and an- thraquinones (AQs) with one and two positions substituted with hydroxyls in the ideal gas state at 298.15 K and 1.013×10~5 pa were calculated at the B3LYP/6-311G~* level using Gaussian 03 program. The isodesmic reactions were designed to calculate the standard free energy of formation (Δ_fG~e). Three types of hydrogen bonds exist in the three kinds of chemicals and their bond energies were ascertained as 7-15, 15-23 and 49-58 kJ·mol~(-1) respectively by comparing the Δ_fG~e values. Electronic density topology analysis was applied to validate the strength of bond.     

Theoretical Study on the Structures and Properties of Hydrogen Bonding Complexes between Diazines and Water

Density functional theory B3LYP method and second-order Moller-Plesset perturbation theory MP2 method were employed to obtain the optimized geometries of the ground state and interaction energy for diazines and water complexes. The results show that the ground state complexes have strong hydrogen bonding interaction with -20.99, -16.73 and -15.31 kJ/mol after basis set superposition error and zero-point vibration energy correction for pyridazine-water, pyrimidine-water and pyrazine-water, respectively, and large red-shift for the symmetric H-O stretching vibration frequencies due to the formation of N…H-O hydrogen bond in the diazine-water complexes. The NBO analysis indicates that intermolecular charge transfer are 0.0316, 0.0255 and 0.0265 e respectively. In addition, the first singlet （n,n＊） vertical excitation energy of the monomer and the hydrogen bonding complexes between diazines and water was investigated by time-dependent density functional theory.     

(CH2)2O, (CH2)2S与双卤分子间卤键的理论研究

运用量子化学密度泛函B3LYP方法, 采用6-311＋＋G(d,p)及aug-cc-pVDZ基组, 通过CP校正的几何梯度优化对(CH2)2O和(CH2)2S与双卤分子XY (XY＝Cl2, Br2, ClF, BrF, BrCl)形成的卤键复合物的几何构型、振动频率和相互作用能等进行了研究. 利用电子密度拓扑分析理论方法对卤键复合物的拓扑性质进行了分析研究, 探讨了该类分子间卤键的作用本质. 结果表明, (CH2)2O和(CH2)2S与双卤分子间的卤键介于共价键与离子键之间, 偏于静电作用成分为主. 形成卤键后, 双卤分子的键长增加, 振动频率减小, 原子积分性质发生改变. 卤键键长的变化、键能的强弱、键鞍点处的电子密度值与双卤分子的电负性有关.     

2,2’-二甲基-4,4’-联噻唑与CHCl3分子间相互作用的理论研究

采用量子化学从头算理论在MP2/6-31G(d,p)水平上对2,2’-二甲基-4,4’-联噻唑顺反异构体, trans-2,2’-二甲基-4,4’-联噻唑-CHCl3 (I), cis-2,2’-二甲基-4,4’-联噻唑-CHCl3 (II)形成的1∶1氢键复合物进行计算研究. 结果表明, 2,2’-二甲基-4,4’-联噻唑在气相条件下, 反式构象比顺式构象稳定. 氯仿与2,2’-二甲基-4,4’-联噻唑形成的复合物存在较强的氢键, 表现为氮原子的孤对电子与氯仿分子中C—H反键σ轨道的相互作用, 另外形成C—H…Cl弱相互作用, 氢键作用使2,2’-二甲基-4,4’-联噻唑的顺式结构在氯仿溶剂比反式结构更稳定.     

液态石油烃的脱砷及砷化物与亚铜探针的相互作用

采用密度泛函理论B3LYP方法, 在6-311+G(2df,2p)基组水平上研究了液态石油烃体系中甲基胂化合物与过渡金属探针Cu+和CuCl的相互作用. 结果表明, 甲基胂化物与亚铜离子作用的最稳定模式为四面体构型, 随着烃基取代数增加, 砷化物同Cu+或CuCl的相互作用能(E0)更负, 配合物更稳定, 同时二者的相互作用轨道的能级差(△E)与E0值线性相关(R2≥0.99). Cu+配合物中, As—Cu成键轨道向C—As和/或H—As反键轨道形成电子反馈, 但是CuCl配合物中类似电子反馈则没有形成. 烃基取代并不降低活性组分对砷化物的吸附活性, 在活性组分满足砷化物选择性吸附的条件下, 液态石油烃脱砷的主要控制因素为砷化物在脱砷剂内部孔道中的扩散传输. 有机硫化物噻吩并不影响砷化物的选择性吸附分离, 硫醇类化合物则会影响单烷基砷化物的选择性吸附. 在进行脱砷剂开发时, 应拓宽载体孔道以提高流体传输效率, 并选择活性相组分与砷化物作用的△E相对较小, 配合物容易形成电子反馈, 且对硫醇类化合物的作用能力相对较弱, 对单烷基砷化物的作用能力相对较强的过渡金属组分.     

5-甲基胞嘧啶-BH3复合物构型及异构化机理的理论研究

用B3LYP/6-311＋G(d)及MP2/6-311＋G(d)计算方法, 对5-甲基胞嘧啶与BH₃所形成复合物及异构化反应进行了研究, 获得了6种复合物及4个异构化过渡态. 在考虑基组重叠误差校正基础上, 得到了结合能及变形能等信息, 并用自然键轨道分析法讨论了其相互作用情况. 结果表明, BH₃与5-甲基胞嘧啶中N(3), O及N(4)相连形成稳定复合物a, b₁, b₂和c, 其结合能分别为104.58, 92.25, 63.49和43.41 kJ•mol^－1; 复合物a, b₁, b_2, c和d既可通过BH₃与5-甲基胞嘧啶不同部位结合直接生成, 也可通过BH₃整体迁移实现相互转化; 甲基化对复合物稳定性及相互异构化能垒无明显影响.     

Theoretical study of the structure, stability, and infrared spectra of hydrogen-bonded complexes of N-nitrosodiethanolamine (NDELA) with water molecules

A theoretical study of the interaction between the N-nitrosodiethanolamine (NDELA) molecule and one to five water molecules was performed at the B3LYP level using a large polarized basis set. The calculated complexation energies (corrected for BSSE and ZPVE) of NDELA with one, two, three, four, and five water molecules are ?4.62 kcal/mol, ?9.83 kcal/mol, ?15.29 kcal/mol, ?21.60 kcal/mol, and ?25.10 kcal/mol respectively at the B3LYP/6-311++G** level. In all complexes studied, there are red shifts in the vibrational frequencies of the O-Hs of NDELA and water molecules along with increases in the corresponding IR intensities.     

HCN消除反应机理的理论研究

采用密度泛函理论方法从HCN氧化和水解两个方面研究了HCN消除反应机理,并考虑了HCN的直接消除反应(途径Ⅰ和途径Ⅱ)和CuO上的HCN消除反应(途径Ⅲ和途径Ⅳ)。途径Ⅰ为HCN与2个O2分子生成CO2、NO和H原子;途径Ⅱ为HCN与1个O2分子和1个H2O分子生成 CO2和NH3;途径Ⅲ为CuO上HNCO水解为CO2和NH3;途径Ⅳ为CuO上HCN水解为CO和NH3。研究发现,途径III速控步骤的活化自由能垒为157.32 kJ/mol,比途径Ⅱ中HNCO水解降低12.34 kJ/mol;比途径Ⅳ降低了63.8 kJ/mol。可见,HNCO是HCN净化过程中的重要中间体,CuO的加入降低了反应能垒,促进了HCN消除。     

Density Functional Theory Study on Hydrogen Bonding Interaction of Catechin-(H2O)n

Density functional theory B3LYP method with 6‐31G* basis set has been used to optimize the geometries of the catechin, water and catechin‐(H₂O)_n complexes. The vibrational frequencies have been studied at the same level to analyze these complexes. Six and eleven stable structures for the catechin‐H₂O and catechin‐(H₂O)₂ have been found, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes corrected by basis set superposition error, are from ?13.27 to ?83.56 kJ/mol. All calculations also indicate that there are strong hydrogen‐bonding interactions in catechin‐water complexes. The strong hydrogen‐bonding contributes to the interaction energies dominantly. The O–H stretching motions in all the complexes are red‐shifted relative to that of the monomer.