New fluorous/organic biphasic systems achieved by solvent tuning

Miscibility tests between 60 pairs of fluorous and organic solvents have been performed, and a number of biphasic systems based on hydrofluoroether solvents have been identified. Mutual solubilities of a series of fluorous and organic solvents have been measured to ascertain the compositions of the biphasic systems. A qualitative solvent tuning strategy based on solvent polarity and fluorophilicity/phobicity is introduced. Solvent tuning is then used to modulate the partition coefficients (P) of triarylphosphines with 0-3 fluorous tags. The results lay a foundation for future applications of these and related biphasic systems in catalysis and extraction.     

Practice of fluorous biphase chemistry: convenient synthesis of novel fluorophilic ethers via a Mitsunobu reaction

The evolution of the term fluorous is addressed first, then a concise terminology is proposed, including fluorous partition coefficient, specific fluorophilicity and fluorousness. Some examples are shown for the design of higher generation fluorophilic molecules, involving Class I to Class III ponytails. Fluorophilic ethers of the structure of ArC(CF₃)₂O(CH₂)_m(CF₂)_nF (m=1, n=1, 7; m=3, n=8) are obtained in high yields, when 2-aryl-1,1,1,3,3,3-hexafluoro-propanols are reacted either with trifluoroethyl- and 1H,1H-perfluorooctyl triflates (NaH/DMF, Williamson ether synthesis) or with 3-perfluorooctyl-propanol (Ph₃P/EtO₂CNNCO₂Et/PhCF₃, Mitsunobu reaction), respectively. Fluorophilic phenol- and perfluoro-tert-butyl ethers can also be prepared effectively by the latter method. In case of higher homologues (n=7, 8) product isolation can be facilitated using fluorous extraction (C₆F₁₄/CH₃OH). Specific fluorophilicity values of target molecules are estimated using a 2D method and compared with experimentally determined ones.     

Basis set and correlation effects on computed positive ion hydrogen bond energies of the complexes AHn · AHn + 1+1: AHn = NH3, OH2, and FH

Basis set expansion and correlation effects on computed hydrogen bond energies of the positive ion complexes AH_n · AH_{n + 1}⁺¹, for AH_n = NH₃, OH₂ and FH, have been evaluated. The addition of diffuse functions on nonhydrogen atoms is the single most important enhancement of split-valence plus polarization basis sets for computing hydrogen bond energies. Basis set enhancement effects appear to be additive in these systems. The correlation energy contribution to the stabilization energies of these complexes is significant, with the second order term being the largest term and having a stabilizing effect. The third order term is smaller and of opposite sign, while the fourth order term is smaller yet and stabilizing. As a result, computed MP4 stabilization energies are bracketed by the MP2 and MP3 energies. The overall effect of basis set enhancement is to decrease hydrogen bond energies, whereas the addition of electron correlation increases stabilization energies.     

Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.     

What is so special about the sorption behavior of highly fluorinated compounds?

Highly fluorinated organic compounds are often said to exhibit unique sorption and partition properties. Terms such as "fluorophilicity" have been used to describe these properties, and fudge factors depending on the degree of fluorination have been used in predictive partition models to make them work for fluorinated solutes. Here we demonstrate that highly fluorinated compounds differ from other molecules only in that they exhibit van der Waals interactions much smaller than those of other molecules of same size. A simple cavity model for partitioning is shown to give good results for fluorinated compounds if the nonspecific interactions are correctly parametrized.     

A theory of molecules in molecules IV. Application to the Hydrogen Bonding Interaction in NH3 · H2O

The theory of molecules in molecules introduced in previous articles is applied to study the hydrogen bonding interaction between an ammonia molecule as proton acceptor and a water molecule as proton donor. The localized orbitals which are assumed to be least affected by the formation of the hydrogen bond are transferred unaltered from calculations on the fragments NH₃ and H₂O, the remaining orbitals are recalculated. A projection operator is used to obtain orthogonality to the transferred orbitals. Additional approximations have been introduced in order to be able to save computational time. These approximations can be justified and are seen to lead to binding energies and bond lengths which are in satisfactory agreement with the SCF values. The point charge approximation for the calculation of the interaction energy between the two sets of transferred localized orbitals is, however, not applicable in this case. An energy analysis of the effect of the hydrogen bond on the localized orbitals of the two fragments is given.     

Reinvestigation of intramolecular hydrogen bond in malonaldehyde derivatives: An ab initio,AIM and NBO study

The RAHB systems in malonaldehyde and its derivatives at MP2/ 6‐311++G(d,p) level of theory were studied and their intramolecular hydrogen bond energies by using the related rotamers method was obtained. The topological properties of electron density distribution in O? H···O intramolecular hydrogen bond have been analyzed in term of quantum theory of atoms in molecules (QTAIM). Correlations between the H‐bond strength and topological parameters are probed. The results of QTAIM clearly showed that the linear correlation between the electron density distribution at HB critical point and RAHB ring critical point with the corresponding hydrogen bond energies was obtained. Moreover, it was found a linear correlation between the electronic potential energy density, V(r_cp), and hydrogen bond energy which can be used as a simple equation for evaluation of HB energy in complex RAHB systems. Finally, the similar linear treatment between the geometrical parameters, such as O···O or O? H distance, and Lp(O)→σ*_OH charge transfer energy with the intramolecular hydrogen bond energy is observed. © 2010 Wiley Periodicals, Inc., Int J Quantum Chem, 2011     

Fluorophilic properties of (perfluorooctyl)ethyldimethylsilyl substituted and tetramethyl(perfluoroalkyl) substituted cyclopentadienes and their Ti(IV), Rh(III), and Rh(I) complexes

Fluorous partition coefficients in perfluorohexane/toluene system for 37 fluorinated silylcyclopentadienes, titanium(IV) complexes derived from them, perfluoroalkyl substituted tetramethylcyclopentadienes, and their Rh(III) and Rh(I) complexes were determined. Specific fluorophilicity and fluorousness according to Kiss and Rábai were calculated for each compound with the help of molecular volume computed with the Gaussian program. The results show relative unimportance of fluorine content parameter for fluorophilicity as shown by a rhodium(I) complex being fluorophilic at fluorine content as low as 46.3%. As expected, fluorophilicity increased with the fluorous ponytail length and ponytail number in series of similar compounds, whereas polar M-Cl bonds were decreasing it. Fluorophilicities of tetramethyl(perfluoroalkyl)cyclopentadiene tautomers varied considerably despite only small differences in molecular volume being found. Most of the compounds were prepared previously, several new silylcyclopentadienes and titanium(IV) silylcyclopentadienyl complexes are reported here for completion.     

On a definition of bond energies based on localized molecular orbitals

A theoretical model is presented for defining bond energies based on localized molecular Orbitals. These bond energies are obtained by rearranging the total SCF energy including the nuclear repulsion term to a sum over orbital and orbital interaction terms and then to total orbital terms, which can be interpreted as the energies of localized orbitals in a molecule. A scaling procedure is used to obtain a direct connection with experimental bond dissociation energies. Two scale parameters are employed, the C-C and the C-H bond dissociation energy in C₂H₆ for A-B and C-H type bonds, respectively. The implications of this scaling procedure are discussed. Numerical applications to a number of organic molecules containing no conjugated bonds gives in general a very satisfactory agreement between experimental and theoretical bond energies.     

p-Alkoxyphenyl-type heavy fluorous tag for the preparation of carbohydrate units

Carbohydrate glycosyl acceptor and donor moieties were synthesized efficiently by using the fluorous tag method. The p-alkoxyphenyl-type heavy fluorous tag was stable under all the reaction conditions used in the preparation of the various carbohydrate units. Each synthetic intermediate carrying the fluorous tag could be obtained in a simple straightforward manner by partition between fluorous and organic solvents.     

Hydrogen bonding of organic bases with trifluoroacetic acid in chloroform: A method of calculating association constants of multi-equilibria systems

¹³ C NMR chemical shifts of sixteen organic bases, hydrogen-bonded with trifluoroacetic acid in deuteriochloroform, are used to calculate equilibrium constants for self-association of acid and for hydrogen bonding of base with various acid n-mers. In this treatment each hydrogen bond of the species in equilibrium is assigned a free energy. The equilibrium constants then correspond to changes in these energies. Thermodynamic models are proposed which differ in the extent to which a given hydrogen bond perturbs the free energies of neighboring bonds in the molecular aggregates. Each furnishes a minimum set of independent, freely variable equilibrium constants, the values of which are then determined through a least squares fitting of the experimental data by an iterative procedure.     

Ab initio studies on hydrogen bonded chains. I. Equilibrium geometry of the infinite,linear chain of hydrogen fluoride molecules

The idealized case of an infinite, linear chain of hydrogen fluoride molecules is studied at the Hartree—Fock level with the aid of the crystal orbital method. Extended gaussian basis sets have been used to compute the equilibrium structure and the stabilization energy (hydrogen bond energy) per HF molecule. It is demonstrated that near Hartree—Fock limit results for this model system account for a large part of the observed differences between isolated dimers in the gas phase and the infinite periodic crystal. For the infinite chain the following results were obtained: r_HF = 1.721 bohr, r_FF = 5.049 bohr and ΔE (hydrogen bond energy per HF) = 5.9 kcal/mole.     

Ab initio valence-bond calculations of H2O

The first and second bond dissociation energies for H₂O have been calculated in anab initio manner using a multistructure valence-bond scheme. The basis set consisted of a minimal number of non-orthogonal atomic orbitals expressed in terms of gaussian-lobe functions. The valence-bond structures considered properly described the change in the molecular system as the hydrogen atoms were individually removed to infinity. The calculated equilibrium geometry for the H₂O molecule has an O-H bond length of 1.83 Bohrs and an HOH bond angle of 106.5°. With 49 valence-bond structures the energy of H₂O at this geometry was ?76.0202 Hartrees. The calculated equilibrium bond length for the OH radical was 1.86 Bohrs and the energy, using the same basis set, was ?75.3875 Hartrees. After correction for zero point energies the calculated bond dissociation energies are: H₂O → OH + H, D₁=75.38 kcal/mole and OH → O+H, D₂=54.79 kcal/mole.     

Possible improvements of the interaction energy calculated using minimal basis sets

Interaction energies for H₂O·H₂O, H₂O·F^– and H₂O·CH₄ have been calculated using the LCAO MO SCF method with minimal basis sets, and employing the counterpoise method to eliminate the basis set superposition error. The results compare favourably with those obtained using extended basis sets. It is shown that for H₂O·H₂O and for the benzene-carbonyl cyanide complex a large part of the dispersion energy can easily be obtained as a sum of bond-bond dispersion energies calculated from a London-type formula using experimental values of the bond polarizability tensors. By considering the interaction between a water and a glycine molecule it is also shown that the dispersion energy plays an important role in the hydration of organic molecules.On leave from the Quantum Chemistry Laboratory, Institute of Basic Problems of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland     

Hydrogen Bonding versus Halogen Bonding: Spectroscopic Investigation of Gas-Phase Complexes Involving Bromide and Chloromethanes

Hydrogen bonding and halogen bonding are important non-covalent interactions that are known to occur in large molecular systems, such as in proteins and crystal structures. Although these interactions are important on a large scale, studying hydrogen and halogen bonding in small, gas-phase chemical species allows for the binding strengths to be determined and compared at a fundamental level. In this study, anion photoelectron spectra are presented for the gas-phase complexes involving bromide and the four chloromethanes, CH₃Cl, CH₂Cl₂, CHCl₃, and CCl₄. The stabilisation energy and electron binding energy associated with each complex are determined experimentally, and the spectra are rationalised by high-level CCSD(T) calculations to determine the non-covalent interactions binding the complexes. These calculations involve nucleophilic bromide and electrophilic bromine interactions with chloromethanes, where the binding motifs, dissociation energies and vertical detachment energies are compared in terms of hydrogen bonding and halogen bonding.     

AB initio SCF LCAO MO study of the HOH…Cl− hydrogen bond

Ab initio SCF LCAO MO calculations for the [H₂O…Cl]^? complex have been performed. The energy of the linear hydrogen bond has been found to be lower than the energy of the bifurcated one. The difference of the energies is about 3 kcal/mole. The calculated equilibrium distance between the oxygen and chlorine atoms equals 5.75 au. The interaction energy of the chlorine anion and the rigid water molecule amounts to ?19 kcal/mole. The optimization of the OH bond length in the complex (linear hydrogen bond) leads to an interaction energy of ?19.5 kcal/mole (the experimental value equals ?13.1 kcal/mole). As a result of the hydrogen bond formation the OH bond length increases by 0.08 au.     

Impact of neutral and acidic species on cycloalkenes nucleation

Non-covalent hydrogen bond interactions between the π cloud of cycloalkenes and three atmospheric common nucleation precursors (H₂S, H₂O, and MeOH) have been investigated using DFT and CCSD(T). The structures and the energies of the 1:1 and 1:2 adducts were computed with the B3LYP-D3 method. The analysis of the investigated electronic properties and geometric parameters shows that cyclohexene is a stronger hydrogen bond acceptor than cyclopentene, then followed by 1,4-cyclohexadiene and 1,3-cyclohexadiene. Comparable red shifts of the OH-/SH-stretching vibrational frequencies were noticed for the studied clusters. Increasing the ring size enhances the hydrogen bond interaction, and increasing the π delocalization decreases the hydrogen bond interactions. This is further confirmed by Bader’s quantum theory of atoms in molecules. The nonadditivity effects were observed in the trimolecular complexes. All the complexes were analyzed by energy decomposition analysis to divide the interaction energy into individual components. Furthermore, the dipole moments and atmospheric implications were also investigated.

     

Intermolecular interactions in uracil–nitrous acid complexes: structures,binding energy,topological properties,and nuclear magnetic resonance study

Molecular interactions between uracil and nitrous acid (U–NA) [C₄N₂O₂H₄? NO₂H] have been studied using B3LYP, B3PW91, and MP2 methods with different basis sets. The optimized geometries, harmonic vibrational frequencies, charge transfer, topological properties of electron density, nucleus‐independent chemical shift (NICS), and nuclear magnetic resonance one‐ and two‐bonds spin–spin coupling constants were calculated for U–NA complexes. In interaction between U and NA, eight cyclic complexes were obtained with two intermolecular hydrogen bonds N(C)HU…N(O) and OH_NA…O_U. In these complexes, uracil (U) simultaneously acts as proton acceptor and proton donor. The most stable complexes labeled, UNA1 and UNA2, are formed via NH bond of U with highest acidity and CO group of U with lowest proton affinity. There is a relationship between hydrogen bond distances and the corresponding frequency shifts. The solvent effect on complexes stability was examined using B3LYP method with the aug‐cc‐pVDZ basis set by applying the polarizable continuum model (PCM). The binding energies in the gas phase have also been compared with solvation energies computed using the PCM. Natural bond orbital analysis shows that in all complexes, the charge transfer takes place from U to NA. The results predict that the Lone Pair (LP)(O)_U → σ*(O? H) and LP(N(O)_NA → σ*(N(C)? H)_U donor–acceptor interactions are most important interactions in these complexes. Atom in molecule analysis confirms that hydrogen bond contacts are electrostatic in nature and covalent nature of proton donor groups decreases upon complexation. The relationship between spin–spin coupling constant (^1hJ_H…_Y and ^2hJ_H…_Y) with interaction energy and electronic density at corresponding hydrogen bond critical points and H‐bonds distances are investigated. NICS used for indicating of aromaticity of U ring upon complexation. © 2013 Wiley Periodicals, Inc.