Rapid selection system of strains with higher avicel degrading ability in a cellulolytic fungus,Trichoderma

We have attempted to develop an active selection system for strains that have a higher potential for Avicel degradation using haploidized conidia from colchicine-treated Trichoderma reesei Rut C-30 as a model strain. Avicel, absorbent cotton, and wood powder were used as substrates for selection. It appeared that the strains that degrade Avicel actively could be effectively selected when the solid medium containing the selection substrate and the liquid medium containing Avicel were used.     

New short peptaibols from a marine Trichoderma strain

The production of peptaibols by a marine-related Trichoderma longibrachiatum strain was studied using electrospray ionisation multiple-stage ion trap mass spectrometry (ESI-MSn-IT) and gas chromatography/electron impact mass spectrometry (GC/EI-MS). Two major groups of peptaibols were identified, those with long sequences (20 amino acids) and others with short sequences (11 amino acids). This paper describes the methodology used to establish the sequences of short peptaibols in a mixture without previous individual separation. Nine peptaibols were identified. Among them, eight are new, namely as trichobrachin A I-IV (Aib9-Pro10 sequence) and as trichobrachin B I-IV (Val9-Pro10 sequence). Original Pro6-Val7 and Val9-Pro10 sequences have to be noted.     

Lignin degrading ability of selected aspergillus Spp.

Most lignin research has been on wood-rot fungi and not on other lignolytic organisms. Members of the genusAspergillus inhabit lignin-rich environments, and we have studied their relative lignin-degrading potential.Aspergillus fumigatus, A. japonicus, A. niger, andA. terreus were tested for their ability to metabolize¹⁴C-labeled aromatic compounds. The species tested decarboxylated, demethoxylated, and cleaved the rings of coumaric, ferulic, vanillic, veratric, and anisic acids. More than 90% of C-ring-labeled ferulic and vanillic acids disappeared from the medium in 96 h of cultivation. More than half of the above was respired, the rest was incorporated in unknown form into the mycelium. Mycelia were homogenized and about 3% of the initial label was found in TCA precipitate of the cell-free supernatant. Protocatechuic acid 3,4-dioxygenase (EC 1.13.11.3) and catechol 1,2-dioxygenase (EC 1.13.11.1) activities were detected in the mycelial extracts of theAspergillus spp. All theAspergillus spp. were capable of degrading both aromatic and carbohydrate components of water-soluble lignocarbohydrate complexes (LCC) from wheat straw. The degradation of the aromatic moiety of soluble LCC with apparent molecular mass more than 100,000 daltons was far more active in theAspergillus spp. than in the whiterot fungi tested; i.e.Polyporus versicolor, Pleurotus ostreatus, andForties annosus. The aromatics present in the soluble LCC, as well as a variety of lignin-related compounds tested, did not affect the production of hemicellulases byA. japonicus. Aspergillus spp. degraded¹⁴C-dehydrogenative polymerizates, converting carbon from the ring as well as from the -O¹⁴CH₃ groups to¹⁴CCO₂.¹⁴CO₂ release after 21 d did not exceed 10% of the total¹⁴C input. This situation is comparable to some white-rot fungi. Lignosulfonate was poorly degraded byA. japonicus, but clearly modified.Fomes annosus was able to grow much better on lignosulfonate whenA. japonicus had previously grown on it.Aspergillus spp. grew efficiently on wheat straw, utilizing lignin and some carbohydrates, and rendering the remaining carbohydrates more available to attack of carbohydrases.     

Influence of recycling and temperature on the swelling ability of paper

Hornification is the loss of fiber wall swelling which is detrimental to subsequent recycling resulting from drying. It is known that dried fibers lose their conformability and swelling capacity. The effect of recycling treatment on the swelling ability of hardwood bleached kraft pulp fibers was determined. Modelling paper recycling, sheets were recycled using heat treatment (23°C, 60°C, 100°C). The results were compared with those for natural fibers from bleached kraft pulp. Swelling kinetics of sheets was measured by a modified method monitoring interactions of pulp with water. Swelling ability decreased during the recycling in comparison with never-recycled pulp at all temperatures. Recycling of sheets caused only small changes in the cupri-ethylene-diamine viscosity, however, the water retention value decreased considerably.     

Isolation of strains degrading poly(Vinyl alcohol) at high temperatures and their biodegradation ability

Thermophilic strains were isolated for the first time using activated sludge retrieved from waste water treatment plant of a poly(vinyl alcohol) (PVA) producing factory for biodegradation of PVA at relatively high temperatures. The isolated strains were identified to be Geobacillus tepidamans, Brevibacillus brevis and Brevibacillus limnophilus. The former strain degraded PVA for itself, while the latter 2 strains digested PVA symbiotically. PVA degradation activity of the isolated strains was assessed at first by the halo zone size formed around the colonies and finally by the modified Sturm test. The biodegradation rate of PVA was explored also in the presence of different dyes, because most of the waste water from PVA-consuming factories contains waste dyes.     

Rapid Isolation of the Trichoderma Strain with Higher Degrading Ability of a Filter Paper and Superior Proliferation Characteristics Using Avicel Plates and the Double-Layer Selection Medium

The cost of cellulase is still a problem for bioethanol production. As the cellulase of Trichoderma reesei is applicable for producing ethanol from cellulosic materials, the cellulase productivity of this fungus should be increased. Therefore, we attempted to develop a system to isolate the strain with higher degrading ability of a filter paper and superior proliferation characteristics among the conidia treated with the mitotic arrester, colchicine. When green mature conidia of T. reesei RUT C-30 were swollen, autopolyploidized, and incubated in the double-layer selection medium containing Avicel, colonies appeared on the surface earlier than the original strain. When such colonies and the original colony were incubated on the Avicel plates, strain B5, one of the colonies derived from the colchicine-treated conidia, showed superior proliferation characteristics. Moreover, when strain B5 and the original strain were compared in the filter paper degrading ability and the cellulose hydrolyzing activity, strain B5 was also superior to the original strain. It was suspected that superior proliferation characteristics of strain B5 reflects higher filter paper degrading ability. Thus, we concluded that the Trichoderma strain with higher degrading ability of a filter paper and superior proliferation characteristics can be isolated using Avicel plates and the double-layer selection medium.     

The effect of Trichoderma reesei cellulases and hemicellulases on the paper technical properties of never-dried bleached kraft pulp

Four purified cellulases, a xylanase and mannanase from Trichoderma reesei were used to treat never-dried bleached pine kraft pulp prior to refining, and the effects on pulp properties were evaluated. The enzymatic treatments hydrolysed up to 0.8% of pulp dry weight. The results demonstrated that the individual cellulases have profoundly different modes of action in modifying pulp carbohydrates. This is especially clear when comparing their effects at the same level of hydrolysis. Pretreatment with cellobiohydrolases I (CBH I) and II (CBH II) had virtually no effect on the development of pulp properties during refining, except for a slight decrease in strength properties. On the contrary, endoglucanase I (EG I) and endoglucanase II (EG II) improved the beatability of the pulp as measured by Schopper--Riegler value, sheet density and Gurley air resistance. Of the endoglucanases, EG II was most effective in improving the beating response. The combinations of CBH I with EG I and EG II had similar effects on the pulp properties as the endoglucanases alone, although the amount of hydrolysed cellulose was increased. Pretreatments with xylanase or mannanase did not appear to modify the pulp properties. The same enzyme treatments which improved the beatability, however, slightly impaired the pulp strength, especially tear index at the enzyme dosages used. When compared at a given level of cellulose hydrolysis, the negative effect of EG II on strength properties was more pronounced compared with EG I. Thus, the exploitation of cellulases for fibre treatments requires careful optimization of both enzyme composition and dosage. Since the endoglucanases had no positive effect on the development of tensile strength, it is suggested that the explanation for the increased beating response is increased fibre breakage and formation of fines, rather than improved flexibilization. This revised version was published online in August 2006 with corrections to the Cover Date.     

Isolation and characterization of 4-chlorophenol degrading bacterial strain from pharmaceutical xenobiotic compounds contaminated soil using enrichment technique

4- chlorophenol is available as the fundamental basic compound of numerous manufactured organics. It is produced from various sources like herbicides, wood additives, oil industries, pharmaceutical drugs and so on. It can be removed from the effluent by various ways but most effective method is bioremediation. In present study, aerobic bacterial strain was isolated from soil that was contaminated with pharmaceutical xenobiotic compounds using enrichment technique with 500 ppm of 4-chlorophenol as a sole source of carbon and energy. Colonies were isolated after 24 h of incubation on petri plate by media enrichment with 500 ppm of 4- chlorophenol and serial dilution method. 18 colonies were isolated and examined for their ability to degrade 500 ppm of 4-chlorophenol. The most potent strain, C17 was able to remove nearly ～99.93% of 4-chlorophenol in 24 h, 37 °C temperature and 6.8 pH. Based on morphological, biochemical, nucleotide homology and phylogenetic analysis the strain was found to have maximum similarity (98.98%) with Bacillus timonensis strain 10403023.     

Polykaryon formation using a swollen conidium of Trichoderma reesei

The cellulolytic fungus, Trichoderma has oval and mononucleate conidia. When these conidia are incubated in a liquid medium, they begin to swell and their shape becomes spherical followed by an increase in inner space. In such swollen conidia, it is possible to produce a larger autopolyploid nucleus using a mitotic arrester compared with the case of the original conidia. In this study, polykaryon formation was attempted using these swollen conidia. Dried mature green conidia of Trichoderma reesei QM6a (IFO 31326) were incubated in Mandel's medium in order to swell. The swollen conidia were treated with a mitotic arrester, colchicine, for autopolyploidization. After autopolyploidization, polykary on formation was carried out using the swollen conidia. After the treatment, multiple smaller nuclei whose diameter was almost the same as that of the original strain were generated from an autopolyploid nucleus in a swollen conidium. A cellulase hyperproducer without decrease in growth rate could be selected using such swollen conidia.     

Purification of NAD glycohydrolase from Neurospora crassa conidia by a polyclonal immunoadsorbent.

NAD glycohydrolase from Neurospora crassa conidia was purified by affinity chromatography on a column of polyclonal antibodies bound to an agarose matrix. The procedure was easy, non-denaturating and suitable for repetitive use of the gel. The enzyme obtained appeared homogeneous by sodiumdodecyl sulphate-polyacrylamide gel electrophoresis.     

Gerbils of a seizure-sensitive strain have a mitochondrial inner membrane protein with different isoelectric points from those of a seizure-resistant strain

The distribution of proteins in the cerebral cortex of a seizure-sensitive (SS) strain of gerbil and its seizure-resistant (SR) counterpart was profiled using two-dimensional gel electrophoresis. A series of proteins of similar molecular weight (around 83 kDa) showed small but consistent differences in their isoelectric point (pI) with indistinguishable profiles of distribution between the two strains. Amino acid sequences of peptides produced by limited proteolysis of each protein in the spots from the strains were identical or highly homologous to those of mitofilin, a mitochondrial inner membrane protein (IMMT) in humans. Analysis of cDNA sequences revealed the proteins of these spots to be gerbil mitofilin-like proteins (gIMMT), with a few base substitutions between SS and SR strains, in particular within a region near a putative transmembrane domain that is highly conserved in humans and gerbils. The amino acid at the site was acidic, Glu in humans and Asp in the strain SR of gerbil and a neutral, Asn in strain SS. In addition to these base substitutions, production of multiple species of mRNA for gIMMT by alternative splicing was observed.     

Use of a pentachlorophenol degrading bacterium to bioremediate highly contaminated soil

ASphingomonas species that mineralizes high concentrations of pentachlorophenol (PCP) was isolated from a PCP-contaminated EPA Superfund site. This bacterium, identified asSphingomonas sp. strain RA2, is able to degrade PCP at concentrations of up to 300 μg/mL in liquid culture. This organism was tested for its ability to degrade high concentrations of PCP in a soil that did not contain organisms capable of degrading high concentrations of PCP. When inoculated into contaminated soil,Sphingomonas sp. RA2 mineralized PCP at concentrations of 300, 600, 900, and 1200 μg PCP/g of soil, but was unable to mineralize 1500 μg PCP/g of soil. Only very minimal loss of PCP was seen in uninoculated soils. The results of this study demonstrate thatSphingomonas sp. RA2 may be a useful organism for remediation of sites contaminated with high concentrations of PCP.     

Chromatography on paper impregnated with ion exchange resins a preliminary report

Ion exchange papers were prepared by dipping paper in suspensions of colloidal resin aggregates. These papers were used for the separation of rare earths, partition chromatography and the study of the elution sequence of some transition metals.     

Phylogenetic characterization of a mixed microbial community capable of degrading carbon tetrachloride

Two bacterial communities (NO92 and GBS) capable of degrading carbon tetrachloride (CT) were enriched from in-house CT-contaminated water. These communities are able to degrade CT in the presence of toluene. To characterize the community structure and diversity, one enrichment (NO92) was subjected to 16S ribosomal RNA (rRNA) gene-based molecular analysis. The 16S rRNA genes were amplified from the bulk genomic community DNA and cloned into plasmid vectors. Unique 16S rRNA gene clones, i.e., phylotypes, were detected by four tetrameric restriction enzymes. Together, 123 16S rRNA gene clones were obtained; thirty-one showed different restriction fragment length polymorphism (RFLP) patterns. About 73% of the clones belong to two dominant RFLP patterns. Phylogenetic analysis based on the partial 16S rRNA gene sequences of 10 major phylotypes showed that all the phylotypes that were sequenced were affiliated with the high G+C Gram-positive bacteria. Whereas seven of the phylotypes (∼80% of the clones) were closely related to Rhodococcus, the other three (∼5% of the clones) were related to Curtobacterium. These results suggest that this CT-degrading community is diverse but is predominated by closely related bacterial groups.     

Development of a phenol degrading fluidized bed bioreactor for constant biomass holdup

Phenol degrading biofilms were grown on Celite diatomaceous earth particles in three-phase fluidized beds. Investigations were undertaken to establish     

Active nuclear shuffling system using a swollen conidium of Trichoderma reesei

Cellulase hyperproducers of Trichoderma reesei can be constructed using autopolyploidization and haploidization techniques. To increase the efficiency of this method, the active nuclear shuffling system in a swollen conidium was effective. A dried mature green conidium of a model strain, T. reesei QM6a (IFO 31326), was swollen to make room for a larger autopolyploid nucleus. After colchicine treatment, a larger autopolyploid nucleus was produced in such a swollen conidium. Benomyl treatment of swollen conidia generated multiple smaller nuclei from one larger autopolyploid nucleus. Those smaller nuclei were transported through conidia to mycelia after germination. This system could contribute to increasing the efficiency of genetic shuffling.     

Effect of uniaxial strain on a molecule-based ferrimagnet with crystal chirality

Bimetallic ferrimagnet [Cr(CN)₆][Mn(R)-pnH(H₂O)]H₂O with crystallographical chirality of space group P2₁2₁2₁ exhibits a giant third-order harmonic susceptibility at around 38 K. This anomaly appears as precursory magnetic phenomenon of the magnetic ordering. In order to investigate the effect of lattice distortion on this giant nonlinear magnetic response (NLMR) and finally elucidate the correlation between the structural chirality and the giant NLMR, we performed the ac susceptibility measurement for the single crystal in the situation of bringing about lattice distortion along the direction parallel to the a-axis. This giant NLMR was drastically suppressed even by slight strain, whereas the traces could be confirmed in the region up to 3.7 kbar. We conclude that the appearance of the giant NLMR requires crystal chirality well-regulated over the crystal.