Triple hydrogen bonds direct crystal engineering of metal-assembled complexes: the effect of a novel organic-inorganic module on supramolecular structure

Novel triply hydrogen bonded suprastructures based on [M(tdpd)2(L)2]2- (H2tdpd=1,4,5,6-tetrahydro-5,6-dioxo-2,3-pyrazinedicarbonitrile, L=solvent) and melamine-analogous cations have been synthesized and characterized. The use of anions containing two AAA sets from [M(tdpd)2(L)2]2- together with cations containing one DDD set (A=hydrogen-bond acceptor, D=hydrogen-bond donor) leads to the formation of complementary triply hydrogen bonded modules in the solid state. In all cases, the building module is further extended via additional hydrogen-bonding interactions to produce a tape, and tapes are assembled into sheets. These results show that a hydrogen-bonded module consisting of different kinds of building blocks, one of which is a metal complex that includes hydrogen-bond acceptor sites and the other is a hydrogen-bond donor molecule, will be attractive for constructing metal-containing supramolecular systems by the self-assembly technique.     

Hydrogen‐bonded complexes of nicotine with simple alcohols

Ab initio and density functional theory studies have been performed on the hydrogen‐bonded complexes of neutral and protonated nicotine with ethanol, methanol, and trifluromethanol to explore their relative stability in a systematic way. Among all the hydrogen‐bonded nicotine complexes considered here, protonated forms in nicotine–ethanol and nicotine–methanol, and neutral form in nicotine–trifluromethanol complexes have been found to be the most stable. In the former two complexes, the proton attached to the pyrrolidine nitrogen acts as a strong hydrogen bond donor, whereas the pyrrolidine nitrogen atom acts as a hydrogen bond acceptor in the latter case. Neutral complex of nicotine with trifluromethanol has been found to possess a very short hydrogen bond (1.57 Å) and basis set superposition error corrected hydrogen bond energy value of 19 kcal/mol. The nature of the various hydrogen bonds formed has been investigated through topological aspects using Bader's atoms in molecules theory. From the calculated topological results, excellent linear correlation is shown to exist among the hydrogen bond length, electron density, and its Laplacian at the bond critical points for all the complexes considered. The natural bond orbital analysis has been carried out to investigate the charge transfer in the nicotine alcohol complexes. In contrast to the blue shifting behavior that is generally exhibited by other C? H···O hydrogen bonds involving sp³ carbon atom, the C? H···O hydrogen bond in the protonated nicotine–ethanol and methanol complexes has been found to be proper with red shifting in nature. © 2011 Wiley Periodicals, Inc.     

Molecularly Defined Nanostructures Based on a Novel AAA–DDD Triple Hydrogen‐Bonding Motif

A facile and flexible method for the synthesis of a new AAA–DDD triple hydrogen‐bonding motif is described. Polytopic supramolecular building blocks with precisely oriented AAA and DDD groups are thus accessible in few steps. These building blocks were used for the assembly of large macrocycles featuring four AAA–DDD interactions and a macrobicyclic complex with a total of six AAA–DDD interactions.     

Redox‐Controlled Hydrogen Bonding: Turning a Superbase into a Strong Hydrogen‐Bond Donor

Herein the synthesis, structures and properties of hydrogen‐bonded aggregates involving redox‐active guanidine superbases are reported. Reversible hydrogen bonding is switched on by oxidation of the hydrogen‐donor unit, and leads to formation of aggregates in which the hydrogen‐bond donor unit is sandwiched by two hydrogen‐bond acceptor units. Further oxidation (of the acceptor units) leads again to deaggregation. Aggregate formation is associated with a distinct color change, and the electronic situation could be described as a frozen stage on the way to hydrogen transfer. A further increase in the basicity of the hydrogen‐bond acceptor leads to deprotonation reactions.     

Quantum chemical investigation of hydrogen-bond strengths and partition into donor and acceptor contributions

We present a simple increment model for use in the rapid scoring of hydrogen bond strengths employing 15 chemically diverse donor and 28 acceptor terms. The increments cover a large variety of hydrogen bond donor and acceptor groups and are more specific than SYBYL atom types. The increments have been fitted to quantum chemical ab initio interaction energies of 81 small hydrogen‐bonded complexes determined at the level of second‐order Møller‐Plesset perturbation theory (MP2). The complexes have been chosen such as to represent the most important types of donor‐acceptor pairs found in biological systems. Sulphur is found to be a strong hydrogen bond acceptor while its donor capacities are weak. By taking CH acidic H donors into account, a linear correlation between MP2 energies and the increment model with a coefficient of correlation of r² = 0.994 has been accomplished. The transferability of the fitted parameters has been assessed on a second set of complexes including larger molecules of biological relevance. Very good agreement has been achieved for noncyclic hydrogen bonds. Cooperative effects are not accounted for by the current increment model. For this reason, binding energies of strong cyclic hydrogen bonds, as e.g. present in DNA base pairs, are underestimated by about 30–40%. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2007     

A theoretical structural analysis of the factors that affect 1JNH, 1hJNH and 2hJNN in N–H···N hydrogen‐bonded complexes

Calculations of ¹ J_NH, ^1h J_NH and ^2h J_NN spin–spin coupling constants of 27 complexes presenting N–H·N hydrogen bonds have allowed to analyze these through hydrogen‐bond coupling as a function of the hybridization of both nitrogen atoms and the charge (+1, 0, ? 1) of the complex. The main conclusions are that the hybridization of N atom of the hydrogen bond donor is much more important than that of the hydrogen bond acceptor. Positive and negative charges (cationic and anionic complexes) exert opposite effects while the effect of the transition states ‘proton‐in‐the‐middle’ is considerable. Copyright © 2008 John Wiley & Sons, Ltd.     

Chloride‐Anion‐Templated Synthesis of a Strapped‐Porphyrin‐Containing Catenane Host System

The synthesis, structure and anion‐recognition properties of a new strapped‐porphyrin‐containing [2]catenane anion host system are described. The assembly of the catenane is directed by discrete chloride anion templation acting in synergy with secondary aromatic donor–acceptor and coordinative pyridine–zinc interactions. The [2]catenane incorporates a three‐dimensional, hydrogen‐bond‐donating anion‐binding pocket; solid‐state structural analysis of the catenane?chloride complex reveals that the chloride anion is encapsulated within the catenane’s interlocked binding cavity through six convergent CH????Cl and NH???Cl hydrogen‐bonding interactions and solution‐phase ¹H NMR titration experiments demonstrate that this complementary hydrogen‐bonding arrangement facilitates the selective recognition of chloride over larger halide anions in DMSO solution.     

Push–Pull Buta‐1,2,3‐trienes: Exceptionally Low Rotational Barriers of Cumulenic CC Bonds and Proacetylenic Reactivity

A variety of asymmetrically donor–acceptor‐substituted [3]cumulenes (buta‐1,2,3‐trienes) were synthesized by developed procedures. The activation barriers to rotation ΔG^≠ were measured by variable temperature NMR spectroscopy and found to be as low as 11.8 kcal mol^?1, in the range of the barriers for rotation around sterically hindered single bonds. The central C?C bond of the push–pull‐substituted [3]cumulene moiety is shortened down to 1.22 Å as measured by X‐ray crystallography, leading to a substantial bond length alternation (BLA) of up to 0.17 Å. All the experimental results are supported by DFT calculations. Zwitterionic transition states (TS) of bond rotation confirm the postulated proacetylenic character of donor–acceptor [3]cumulenes. Additional support for the proacetylenic character of these chromophores is provided by their reaction with tetracyanoethene (TCNE) in a cycloaddition‐retroelectrocyclization (CA–RE) cascade characteristic of donor‐polarized acetylenes.     

Factors controlling extremely strong AAA-DDD triply hydrogen-bonded complexes

Triply hydrogen-bonded complexes of the form AAA-DDD are shown to have the strongest interaction when the complex is substituted with electron withdrawing groups on the donor molecule (DDD) and electron donating groups on the acceptor molecule (AAA). In particular, the largest effects are observed when the withdrawing groups act through resonance. This serves to flatten the entire system resulting in more linear, and consequently stronger, hydrogen bonds. Furthermore, the present calculations show that the binding energy correlates with the electron density at the bond critical points and inversely with the hydrogen bond lengths.     

Conformer-independent ureidoimidazole motifs--tools to probe conformational and tautomeric effects on the molecular recognition of triply hydrogen-bonded heterodimers

Linear arrays of hydrogen bonds are useful for the reversible assembly of “stimuli‐responsive” supramolecular materials. There is thus an ongoing requirement for easy‐to‐synthesise motifs that are capable of presenting hydrogen‐bonding functionality in a predictable manner, such that high‐affinity and high‐fidelity recognition occurs. The design of linear arrays is made challenging as a consequence of their ability to adopt multiple conformational and tautomeric configurations; with each additional hydrogen‐bonding heteroatom added to an array, the available tautomeric and conformational space increases and it can be difficult to anticipate where unproductive conformers/tautomers will arise. This paper describes a detailed study on the complementary ureidoimidazole donor–donor–acceptor (DDA) array ( 1 ) and amidoisocytosine donor–acceptor–acceptor (DAA) array ( 2 ). A specific feature of 1 is that two degenerate, intramolecular hydrogen‐bonded conformations are postulated, both of which present a DDA array that is complementary to appropriate DAA partners. 1D and 2D ¹H NMR spectroscopy, isothermal titration calorimetry, and ab initio structure calculations confirm 1 interacts with 2 (K_a≈33000 M ^?1 in CDCl₃) in a conformer‐independent fashion driven by enthalpy. Comparison of the binding behaviour of 1 with hexylamidocytosine ( 4 ) and amidonaphthyridine ( 5 ) provides insight on the role that intramolecular hydrogen‐bonding plays in mediating affinity towards DAA partners.     

Donor–Acceptor Complex Enables Alkoxyl Radical Generation for Metal‐Free C(sp3)–C(sp3) Cleavage and Allylation/Alkenylation

The alkoxyl radical is an essential and prevalent reactive intermediate for chemical and biological studies. Here we report the first donor–acceptor complex‐enabled alkoxyl radical generation under metal‐free reaction conditions induced by visible light. Hantzsch ester forms the key donor–acceptor complex with N ‐alkoxyl derivatives, which is elucidated by a series of spectrometry and mechanistic experiments. Selective C(sp³)‐C(sp³) bond cleavage and allylation/alkenylation is demonstrated for the first time using this photocatalyst‐free approach with linear primary, secondary, and tertiary alkoxyl radicals.     

Source of Cooperativity in Halogen‐Bonded Haloamine Tetramers

Inspired by the isostructural motif in α‐bromoacetophenone oxime crystals, we investigated halogen–halogen bonding in haloamine quartets. Our Kohn–Sham molecular orbital and energy decomposition analysis reveal a synergy that can be traced to a charge‐transfer interaction in the halogen‐bonded tetramers. The halogen lone‐pair orbital on one monomer donates electrons into the unoccupied σ*_N?X orbital on the perpendicular N?X bond of the neighboring monomer. This interaction has local σ symmetry. Interestingly, we discovered a second, somewhat weaker donor–acceptor interaction of local π symmetry, which partially counteracts the aforementioned regular σ‐symmetric halogen‐bonding orbital interaction. The halogen–halogen interaction in haloamines is the first known example of a halogen bond in which back donation takes place. We also find that this cooperativity in halogen bonds results from the reduction of the donor–acceptor orbital‐energy gap that occurs every time a monomer is added to the aggregate.     

The heterobifunctional ligand 5‐[4‐(1,2,4‐triazol‐4‐yl)phenyl]‐1H‐tetrazole and its role in the construction of a CdII metal–organic chain structure

5‐[4‐(1,2,4‐Triazol‐4‐yl)phenyl]‐1H‐tetrazole, C₉H₇N₇, (I), an asymmetric heterobifunctional organic ligand containing triazole (tr) and tetrazole (tz) termini linked directly through a 1,4‐phenylene spacer, crystallizes in the polar space group Pc. The heterocyclic functions, serving as single hydrogen‐bond donor (tz) or acceptor (tr) units, afford hydrogen‐bonded zigzag chains with no crystallographic centre of inversion. In the structure of catena‐poly[[diaquacadmium(II)]bis{μ₂‐5‐[4‐(1,2,4‐triazol‐4‐yl)phenyl]tetrazol‐1‐ido‐κ²N¹:N^1′}], [Cd(C₉H₆N₇)₂(H₂O)₂]_n, (II), the Cd^II dication resides on a centre of inversion in an octahedral {N₄O₂} environment. In the equatorial plane, the Cd^II polyhedron is built up from four N atoms of two kinds, namely of trans‐coordinating tr and tz fragments [Cd—N = 2.2926 (17) and 2.3603 (18) Å], and the coordinating aqua ligands occupy the two apical sites. The metal centres are separated at a distance of 11.1006 (7) Å by means of the double‐bridging tetrazolate anion, L⁻, forming a chain structure. The water ligands and tz fragments interact with one another, like a double hydrogen‐bond donor–acceptor synthon, leading to a hydrogen‐bonded three‐dimensional array.     

New supramolecular architectures based on hydrogen bonding

Heterocyclic compounds containing two and three adjacent hydrogen bond donor and acceptor sites in all possible arrangements were synthesized (see generalized structures shown below) to study and use their “base-pairing” capabilities. With two adjacent donor and acceptor groups there are three possible arrangements and these form two types of complexes (DA·AD and AA·DD). Three adjacent hydrogen bond donor and acceptor sites can be arranged in six different ways and these form three different complexes (ADA·DAD, AAD·DDA, and AAA·DDD).     

Study of supramolecular side‐chain and cross‐linking polymers by complexation of various H‐donor acids with H‐acceptor copolymers containing pendent carbazole and fluorescent pyridyl units

Two H‐bonded acceptor (H‐acceptor) homopolymers 14 and 17 were successfully prepared by polymerization of fluorescent pyridyl monomers PBT and PBOT ( 12 and 13 ), which were synthesized via Sonogashira coupling and Wittig‐Horner reactions. To increase the glass transition temperatures as well as reduce the π‐π stacking of the photoluminescent (PL) H‐acceptor copolymers and their H‐bonded polymer complexes, fluorescent monomers 12 and 13 were copolymerized with N‐vinylcarbazole monomer CAZ (23) to produce H‐acceptor copolymers 15–16 and 18–19 . Supramolecular side‐chain and crosslinking polymers (i.e., H‐bonded polymer complexes) obtained by complexation of light‐emitting H‐acceptor polymers 14–19 with various proton donor (H‐donor) acids 20–22 were further characterized by DSC, POM, FTIR, XRD, and PL measurements. The mesomorphic properties can be tuned from the nematic phase in H‐acceptor homopolymers ( 14 and 17 ) to the tilted smectic C phase in their H‐bonded polymer complexes ( 14/20–21 and 17/20–22 ) by the introduction of H‐donor acids (20–22). Moreover, the PL properties of light‐emitting H‐acceptor polymers can be adjusted not only by the central structures of the conjugated pyridyl cores but also by their surrounding nonfluorescent H‐donor acids. In general, redder shifts of PL emissions in H‐bonded polymer complexes occurred when the light‐emitting H‐acceptor polymers were complexed with H‐donors having smaller pKa values. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 2734–2753, 2009     

Native Mannose‐Dominant Extraction by Pyridine–Phenol Alternating Oligomers Having an Extremely Efficient Repeating Motif of Hydrogen‐Bonding Acceptors and Donors

Pyridine–phenol alternating oligomers in which pyridine and phenol moieties are alternatingly linked through acetylene bonds at the 2,6‐positions of the aromatic rings were designed and synthesized. The pyridine nitrogen atom and the neighboring phenolic hydroxyl group were oriented so that they do not form an intramolecular hydrogen bond but cooperatively act as hydrogen‐bonding acceptor and donor in a push–pull fashion for the hydroxyl group of saccharides. The longer oligomer strongly bound to lipophilic glycosides in 1,2‐dichloroethane, and association constants approached 10⁸ M ^?1. Moreover, the oligomer extracted native saccharides from a solid phase to apolar organic solvents up to the extent of an equal amount of the oligomer and showed mannose‐dominant extraction among naturally abundant hexoses. The oligomer bound to native saccharides even in 20 % DMSO‐containing 1,2‐dichloroethane and exhibited association constants of greater than 10 M ^?1 for D ‐mannose and D ‐glucose.     

Excited‐State Hydrogen Bonding Strengthening and Weakening with Intramolecular Charge Transfer in Resorufin‐Water Complexes: A TD‐DFT Study

The geometric structures, infrared spectra and hydrogen bond binding energies of the various hydrogen‐bonded Res^?‐water complexes in states S0 and S1 have been calculated using the density functional theory (DFT) and time‐dependent density functional theory (TD‐DFT) methods, respectively. Based on the changes of the hydrogen bond lengths and binding energies as well as the spectral shifts of the vibrational mode of the hydroxyl groups, it is demonstrated that hydrogen bonds HB‐II, HB‐III and HB‐IV are strengthened while hydrogen bond HB‐I is weakened in the four singly hydrogen‐bonded Res^?‐Water complexes upon photoexcitation. When the four hydrogen bonds are formed simultaneously between one resorufin anion and four water molecules in the Res^?‐4Water complex, all the hydrogen bonds are weakened in both the ground and excited states compared with those in the corresponding singly hydrogen‐bonded Res^?‐Water complexes. Furthermore, in complex Res^?‐4Water, hydrogen bonds HB‐II and HB‐IV are strengthened while hydrogen bonds HB‐I and HB‐III are weakened after the electronic excitation. The hydrogen bond strengthening and weakening in the various hydrogen‐bonded Res^?‐water complexes should be due to the redistribution of the charges among the four heteroatoms (O_1‐3 and N₁) within the resorufin molecule upon the optical excitation.     

Prediction of Boron–Boron Triple‐Bond Polymers Stabilized by Janus‐Type Bis(N‐heterocyclic) Carbenes

A class of polymeric compounds containing boron–boron triple bonds stabilized by N‐heterocyclic biscarbenes is proposed. Since a triply bonded B₂ is related to its third excited state, the predicted macromolecule would be composed by several units of an electronically excited first‐row homonuclear dimer. Moreover, it is shown that the replacement of biscarbene with N₂ or CO as spacers could change the bonding profile of the boron–boron units to a cumulene‐like structure. Based on these results, different types of diboryne polymers are proposed, which could lead to an unprecedented set of boron materials with distinct physical properties. The novel diboryne macromolecules could be synthesized by the reaction of Janus‐type biscarbenes with tetrabromodiborane, B₂Br₄, and sodium naphthalenide, [Na(C₁₀H₈)], similarly to Braunschweig’s work on the room temperature stable boron–boron triple bond compounds (Science, 2012 , 336, 1420).     

Computational Study on the Unconventional Hydrogen‐Bonded F–H···C Systems

The F–H···YZ₂ (Y = C, Si, BH, A1H;Z = H, PH₃) systems were examined using density functional theory calculations. The main focus of this work is to demonstrate that the chemistry of Y(PH₃)₂ exhibits a novel feature which is a central Y atom with unexpected high basicity. Further, the hydrogen bond strength can be adjusted by the substitution of H atoms of YH₂ by PH₃ groups. The FH···C(PH₃)₂ system has the strongest hydrogen bond interaction, which is larger than a conventional hydrogen bond. In addition to electrostatic interaction, donor‐acceptor interaction also plays an important role in determining the hydrogen bond strength. Therefore, a carbon atom can not only be the hydrogen bond acceptor but also can create an unusual stabilized hydrogen bond complex. Also, X₃B–YZ₂ (X = H, F; Y = C, Si, BH, A1H;Z = PH₃, NH₃) systems were examined, and it was found that the bond strength is controlled predominately by the HOMO‐LUMO gap (ΔIP). The smaller the ΔIP, the larger the bond dissociation energy of the B–Y bond. In addition, NH₃ is a better electron‐donating group than PH₃, and thus forms the strongest donor‐acceptor interaction between X₃B and Y(NH₃)₂.