Homolysis of N-alkoxyamines: a computational study.

During nitroxide-mediated polymerization (NMP) in the presence of a nitroxide R2(R1)NO*, the reversible formation of N-alkoxyamines [P-ON(R1)R2] reduces significantly the concentration of polymer radicals (P*) and their involvement in termination reactions. The control of the livingness and polydispersity of the resulting polymer depends strongly on the magnitude of the bond dissociation energy (BDE) of the C-ON(R1)R2 bond. In this study, theoretical BDEs of a large series of model N-alkoxyamines are calculated with the PM3 method. In order to provide a predictive tool, correlations between the calculated BDEs and the cleavage temperature (Tc), and the dissociation rate constant (k(d)), of the N-alkoxyamines are established. The homolytic cleavage of the N-OC bond is also investigated at the B3P86/6-311++G(d,p)//B3LYP/6-31G(d), level. Furthermore, a natural bond orbital analysis is carried out for some N-alkoxyamines with a O-C-ON(R1)R2 fragment, and the strengthening of their C-ON(R1)R2 bond is interpreted in terms of stabilizing anomeric interactions.     

Photochromic dihetarylethenes. 9. Dithienylperfluorocyclopentenes: a quantum-chemical study

MNDO calculations of the open and cyclic forms of the molecules of three photochromic 1,2-di(3-thienyl)perfluorocyclopentene derivatives were carried out. Structural parameters as well as electronic and thermodynamic characteristics of the compounds studied were analyzed. The optimized geometric parameters of the open forms of the three molecules under study are in satisfactory agreement with the results of X-ray diffraction studies. Analysis of the effect of substituents on the electronic characteristics of the central fragment and on the composition of the frontier MOs suggests that it is more appropriate to use cyclic rather than open forms of the molecules for correlation analysis and for prediction of photochromism of dithienylperfluorocyclopentenes.     

Cyanomethylidyne: a reactive carbyne radical.

The cyanomethylidyne radical (CCN) has been a long-standing subject of extensive structural and spectroscopic studies. However, its chemical reactivity has received rather little attention. Recently, we studied the reaction of CCN with the simplest alkane, CH4, which follows a mechanism of carbyne insertion-dissociation rather than that of direct H abstraction proposed by a recent experimental study. However, we are aware that alkanes like CH4 bear no electron lone pairs and thus are not ideal diagnostic molecules for distinguishing between the carbyne-insertion and H-abstraction mechanisms. Hence, we chose a series of sigma-bonded molecules HX (X=OH, NH2, and F) which bear electron lone pairs and are better diagnostics for carbyne-insertion behavior. The new results at the CCSD(T)/6-311+G(2df,p)//B3LYP/6-311G(d,p)+ZPVE, CCSD(T)/aug-cc-pVTZ//B3LYP/6-311G(d,p)+ZPVE, G2M(CC1), and MC-QCISD//B3LYP/6-31G(d)+ZPVE levels definitively confirm the carbyne-insertion behavior of the CCN radical towards HX. In addition, we make the first attempt to understand the reactivity of the CCN radical toward pi-bonded molecules, using the CCN+C2H2 model reaction. This reaction involves carbenoid addition to the C[triple chemical bond]C bond without a potential-energy barrier to form a C3 three-membered cyclic intermediate followed by H extrusion. Therefore, the reactions of CCN with both sigma- and pi-bonded molecules conclusively show that CCN is a reactive carbyne radical and may be more reactive than the well-known CN radical. Future experimental studies, especially on product characterization, are strongly desired to test our proposed carbyne mechanism. The studied reactions of CCN with CH4, NH3, H2O, and C2H2 could be of interest to combustion science and astrophysics, and they could provide efficient routes to form novel cyano-containing molecules in interstellar space.     

Botulism: a pyrolysis-gas-liquid chromatographic study.

Forty samples of dried Clostridia bacteria were subjected to pyrolysis-gas-liquid chromatography (PGLC). Examination of the key fingerprint peaks enabled the analyst to differentiate the samples into their respective antigenic groups. Peaks occurring at the high boiling end of profile could be used to distinguish proteolytic from non-proteolytic strains of C-botulinum. PGLC has proven to be a highly reproducible as well as a rapid specific method for differentiating and identifying samples of Clostridium botulinum.     

N.m.r. studies of a rate process in a bridged biphenyl: Resolution of a discrepancy between n.m.r. and polarimetric kinetic data

Total bandshape analysis of the temperature-dependent n.m.r. spectrum of the bridge methylene protons in 6,6-dicarbethoxy-1,2,3,4-dibenzcyclohepta-1,3-diene has been carried out to yield the following activation parameters: ΔG = 60.96 ± 0.17 kJmol^?1 (14.57 ± 0.04 kcal mol^?1), ΔH^? = 47.3 ± 0.8 kJ mol^?1 (11.3 ± 0.2 kcal mol^?1) and ΔS^? = ?45.6 ± 3.3 J mol^?1 K^?1 (?10.9 ± 0.8 cal mol^?1 K^?1). A value of ΔG^? in agreement with the above may be obtained from a bandshape analysis (at a suitable temperature) of the spectrum of the methylene protons in the carbethoxy groups. In our opinion, the rate process described by these activation parameters must be the configurational inversion of the biphenyl system, and thus the polarimetric data on this compound reported by Iffland and Siegel [J. Am. Chem. Soc. 80, 1947 (1958); half-life of 80 min at room temperature] are seriously called to question, as previously noted by Sutherland and Ramsay [Tetrahedron 21, 3401 (1965)]. We have attempted unsuccessfully to repeat the polarimetric work, and have been able to show by means of thin-layer chromatography in the cold, mass spectral analysis and polarimetry that an optically active impurity (as yet unidentified) is the most probable cause of the discrepancy.     

The excited-state chemistry of protochlorophyllide a: a time-resolved fluorescence study.

The excited-state processes of protochlorophyllide a, the precursor of chlorophyll a in chlorophyll biosynthesis, are studied using picosecond time-resolved fluorescence spectroscopy. Following excitation into the Soret band, two distinct fluorescence components, with emission maxima at 640 and 647 nm, are observed. The 640 nm emitting component appears within the time resolution of the experiment and then decays with a time constant of 27 ps. In contrast, the 647 nm emitting component is built up with a 3.5 ps rise time and undergoes a subsequent decay with a time constant of 3.5 ns. The 3.5 ps rise kinetics are attributed to relaxations in the electronically excited state preceding the nanosecond fluorescence, which is ascribed to emission out of the thermally equilibrated S(1) state. The 27 ps fluorescence, which appears within the experimental response of the streak camera, is suggested to originate from a second minimum on the excited-state potential-energy surface. The population of the secondary excited state is suggested to reflect a very fast motion out of the Franck-Condon region along a reaction coordinate different from the one connecting the Franck-Condon region with the S(1) potential-energy minimum. The 27 ps-component is an emissive intermediate on the reactive excited-state pathway, as its decay yields the intermediate photoproduct, which has been identified previously (J. Phys. Chem. B 2006, 110, 4399-4406). No emission of the photoproduct is observed. The results of the time-resolved fluorescence study allow a detailed spectral characterization of the emission of the excited states in protochlorophyllide a, and the refinement of the kinetic model deduced from ultrafast absorption measurements.     

History repeats itself: Progress in a.c. calorimetry

Periodic heating has been applied more than a century ago to study thermophysical properties of materials. The measurement of heat capacity using a.c. calorimetry was first performed by Corbino in 1910. In connection with the technological development and the progress in science and technology, new and sophisticated apparatus have been constructed in an a.c. calorimetric heat capacity measurements. In this measurement, the noise level of a.c. temperature can be reduced markedly as opposed to the other nonperiodic methods and, therefore, high precision determination can be attained. Furthermore, not only the amplitude but also the phase in a.c. temperature is a useful parameter in constructing much advanced apparatus.     

Mechanism of cysteine oxidation by a hydroxyl radical: a theoretical study.

Cysteine oxidation by HO(.) was studied at a high level of ab initio theory in both gas phase and aqueous solution. Potential energy surface scans in the gas phase performed for the model system methanethiol+HO(.) indicate that the reactants can form two intermediate states: a sulfur-oxygen adduct and a hydrogen bound reactant complex. However these states appear to play a minor role in the reaction mechanism as long as they are fast dissociating states. Thus the main reaction channel predicted at the QCISD(T)/6-311+G(2df,2pd) level of theory is the direct hydrogen atom abstraction. The reaction mechanism is not perturbed by solvation which was found to induce only small variations in the Gibbs free energy of different reactant configurations. The larger size reactant system cysteine+HO* was treated by the integrated molecular orbital+molecular orbital (IMOMO) hybrid method mixing the QCISD(T)/6-311+G(2df,2pd) and the UMP2/6-311+G(d,p) levels of theory. The calculated potential energy, enthalpy, and Gibbs free energy barriers are slightly different from those of methanethiol. The method gave a rate constant for cysteine oxidation in aqueous solution, k=2.4 x 10(9) mol(-1) dm(3) s(-1), which is in good agreement with the experimental rate constant. Further analysis showed that the reaction is not very sensitive to hydrogen bonding and electrical polarity of the molecular environment.     

Nomofungin: a new microfilament disrupting agent.

A new alkaloid, nomofungin, has been isolated from the fermentation broth of an unidentified endophytic fungus obtained from the bark of Ficus microcarpa L. The structure of nomofungin was determined by application of spectroscopic methods. The absolute stereochemistry of nomofungin was assigned by using the exciton chirality method. Nomofungin disrupts microfilaments in cultured mammalian cells and is moderately cytotoxic with minimum inhibitory concentrations (MICs) of 2 and 4.5 microg/mL against LoVo and KB cells, respectively. The ring system of nomofungin is unprecedented.     

Theory of a.c. voltammetry at a rotating disk electrode: Part II. Quasi-reversible and irreversible redox-electrode reactions

Alternating current response at a rotating disk electrode to a small a.c. potential wave superimposed on the slowly changing d.c. potential is theoretically treated for an quasireversible and an irreversible redox-electrode process. Expressions for alternating current-d.c. potential curves are given for three types of a.c. signals, i.e., sinusoidal, rectangular and triangular waves. It is shown that the effect of the coupling of the diffusion layers due to hydrodynamics and a.c. polarization can be expressed in terms of a parameter which is defined by the ratio of the frequency of a.c. wave to that of the rotation of the electrode and Schmidt number.     

Relaxation of a viscoelastic gel bar: I. theory

When a rod of gel is deflected in 3-point bending, two types of relaxation process occur: hydrodynamic relaxation caused by flow of liquid within the gel network, and viscoelastic relaxation of the network itself. The kinetics of load relaxation have previously been analyzed for the case of hydrodynamic relaxation within a perfectly elastic network. That analysis describes, for example, the behavior of silica gel in a nonreactive solvent, such as acetone. When the liquid can attack the gel network, then true viscoelastic relaxation is superimposed on hydrodynamic relaxation, and that situation is examined in the present paper. To a very good degree of approximation, the total relaxation is equal to the product of the hydrodynamic and viscoelastic relaxation functions. In Part II, it will be shown that the present analysis describes the behavior of silica gel in an aqueous solvent and in an alcohol/amine solution.