Conformational Dynamics of Poly(acrylic acid)-Bovine Serum Albumin Polycomplexes at Different pH Conditions

This work presents the real time surface plasmon resonance (SPR) and fluorescence spectroscopy observation of cooperative interactions between aggregate-forming bovine serum albumin (BSA) and oppositely charged linear macromolecule poly(acrylic) acid (PAA). Interactions between protein and polymer result in formation of polyelectrolyte-protein polycomplexes, which exhibit expressed conformational transformations, especially at low pH. The rate constants of observed kinetic transformations were calculated and found to vary in the range from 0.8 × 10⁻³ to 6.7 × 10⁻³ for different pH values. The processes of aggregation, sedimentation and conformation of BSA-PAA complex are discussed.     

Effects of solute-matrix interaction on monitoring the conformational changes of immobilized proteins by surface plasmon resonance sensor

A real-time and labeling-free surface plasmon resonance (SPR) sensor was used to monitor the conformational changes of immobilized globule proteins (RNase A and lysozyme) in chemical unfolding and refolding. The effects of chemical denaturants on the protein structures were investigated. The methodology in protein conformational study on the solid surface is refined through the theoretic calculations and the conformational information of native/denatured proteins in solution. Additionally, our observation illustrates that the ambient buffer solution is merit to influence the refractive index of immobilized protein films and directly be observed from the SPR resonance angle shifts.     

Polymer surfactant kinetics using surface plasmon resonance spectroscopy dodecyltrimethylammonium chloride/polyacrylic acid system

Kinetics of polymer surfactant interactions and the effect of surfactant binding on the conformational dynamics of the polymer were explored in this work using surface plasmon resonance spectroscopy. Polyacrylic acid was modified with thiol to varying degrees so as to force the polymer to form different loop sizes upon adsorption on the gold SPR sensor surface. Dodecyltrimethylammonium chloride in solution was flowed over the polymer-coated sensor surface and the binding was followed in real time. It was found that control of the loop size of the polymer on the solid surface enabled in turn the control of surfactant binding, with the largest loop allowing the maximum amount of surfactant to bind and vice versa. The kinetic plot of the binding showed three distinct segments. The first segment followed convective-diffusive kinetics. The second and third segments followed first-order kinetics with the second rate being significantly faster than the first one. Careful analysis of the second segment showed that it is possible to divide it into two different segments, each following a first-order kinetics, with the second rate being slightly slower than the first one suggesting a gradual slow down of the reaction due to convolution from the polymer conformational changes. Mechanistically, the sudden increase in the rate for the third segment of surfactant binding implies that the polymer matrix is opening up so as to incorporate more surfactant molecules. This was attributed to the formation of charged double surfactant species the repulsive interaction of which prevented the polymer network from imploding. Studies using unmodified polymers suggested the possibility of sudden conformational rearrangement in the polymer network, with progress in surfactant binding. Furthermore, the reflectance of the SPR spectrum was found to increase upon surfactant binding, implying that there is a decreased efficiency of coupling of the incident radiation into the surface plasmon mode of the metal, which suggests that the surfactant actually penetrated the polymer matrix.     

Surface plasmon resonance as a time-resolved probe of structural changes in molecular films: considerations for correlating resonance shifts with adsorbate layer parameters

Surface plasmon resonance (SPR) spectroscopy is an efficient probe of transient structural changes in molecular films. To analyze kinetic SPR data for such systems, generally it is necessary to adapt an adequate theoretical framework that would allow one to express the measured optical quantities (time-dependent shifts of the resonance angle or wavelength) in terms of the structural parameters (layer thickness, mass density, or surface coverage) of the sample molecules. We present here theoretical calculations and illustrative experimental results to address certain essential elements of this type of data analysis for transient SPR systems. The phenomenological framework we consider here is based on multilayer reflectivity calculations, and can be applied to a broad class of systems involving ordered molecular layers on supporting gold films. A typical application of these calculations is demonstrated through the analysis of specific SPR experiments designed to probe the kinetics of pH-induced structural changes in a molecular film of 11-mercaptoundecanoic acid (MUA) on a thin gold film.     

基于表面等离子体子共振的白蛋白免疫传感器的研究

采用自行组装的全波长表面等离子体子共振(SPR)传感装置,以对金和蛋白抗体均有较强吸附作用的A蛋白作为基底膜,测试了A蛋白在金膜表面结合的动力学常数,其结果为2.3×10⁵L/(mol·s).研究了在A蛋白基底膜上白蛋白抗体的定向自组装程度和速率.观测了白蛋白抗体与抗原之间免疫反应的动力学过程,并优化了实验条件.结果表明,白蛋白抗原的浓度在0.02～10mg/mL范围内与信号的响应值呈良好的线性关系.将此SPR传感器用于糖尿病肾病患者尿蛋白的检测,结果较好.     

Reversible pH-driven conformational switching of tethered superoxide dismutase with gold nanoparticle enhanced surface plasmon resonance spectroscopy

A new class of surface-immobilized protein nanomachines can be reversibly actuated by cycling the solution pH between 2.5 and 12.3, which induces a conformational change, thereby modulating the thickness of superoxide dismutase (SOD1) tethered to the Au thin film. By placing Au nanoparticles (AuNP) atop the immobilized SOD1 by means of a gold-thiol assembly, the nanoscale motion of SOD1 at the interface produces mechanical work to lift and then lower the AuNP from the Au substrate by a distance of ca. 3 nm and transduces this motion into an easily measurable reflectivity change in the surface plasmon resonance (SPR) spectrum. As-made supported conjugate consisting of SOD1 and AuNP is quite robust and stable, and its operation in response to pH variations, which mirrors the conformational changes of responsive SOD1 at the interface, is found to be highly reversible and reproducible. This is the first demonstration of the development of novel solid-state sensors and/or switching devices based on substrate-bound protein conformational changes and AuNP enhanced SPR spectroscopy.     

A general method to determine ionization constants of responsive polymer thin films

A general method has been developed to determine the ionization constants of polymer thin films based on the stimuli-responsiveness of the polymer. Robust polymer films were fabricated on silicon wafers and gold slides using perfluorophenyl azide (PFPA) as the coupling agent. The ionization constants were measured by a number of techniques including ellipsometry, dynamic contact angle goniometry, and surface plasmon resonance imaging (SPRi). Using poly(4-vinylpyridine) (P4VP) as the model system, P4VP thin films were fabricated and the ionization constants of the films were measured taking advantage of the pH responsive property of the polymer. The pK(a) determined by ellipsometry, ~4.0, reflects the swelling of the polymer film in response to pH. The pK(a) value calculated from the dynamic contact angle measurements, ~5.0, relies on the change in hydrophilicity/hydrophobicity of the films as the polymer undergoes protonation/deprotonation. The pK(a) value measured by SPRi, ~4.9, monitors in situ the change of refractive index of the polymer thin film as it swells upon protonation. This was the first example where SPRi was used to measure the ionization constants of polymers.     

Surface Plasmon Resonance Coupled with Potential‐step Chronoamperometry: Theory and Applications for Quantitative Measurements of Electrodeposited Thin Films

Cyclic voltammetry (CV) has been combined with surface plasmon resonance (SPR) for probing electrochemical deposition and redox‐initiated film reorganization and conformational changes. However, the varying potential during CV scans leads to unwanted SPR background changes and complicates interpretation of SPR signals. In this work, we show that, when SPR is coupled with CV, the background correction for underpotential deposition of copper and electropolymerization of aniline is either inaccurate or difficult to perform. For accurate thickness measurements of electrodeposited films, potential‐step (PS) chronoamperometry is a method of choice to combine with SPR. The theory that interprets double‐layer charging is used to explain the advantage of PS chronoamperometry over CV in quantifying the thickness of electrodeposited thin films. The influence of the double‐layer charging on the potential‐induced SPR signal change was analyzed, and the results were used to optimize experimental parameters for PS‐SPR. Overall, PS‐SPR is easier to operate, simpler in data interpretation, and more accurate for the film thickness measurement.     

Conformational behavior of grafted weak polyelectrolyte chains: effects of counterion condensation and nonelectrostatic anion adsorption

Poly[(2-dimethylamino)ethyl methacrylate] (PDEM) is completely charged, partially charged, and uncharged at pH 4, 7, and 10, respectively. We have investigated the salt effects on the conformational change of PDEM chains grafted on a surface at different pH by using quartz crystal microbalance with dissipation (QCM-D) and surface plasmon resonance (SPR). The changes in frequency (Δf) and dissipation (ΔD) in QCM-D measurements demonstrate that the conformational behavior is governed by counterion condensation at pH 4 and 7 but by nonelectrostatic anion adsorption at pH 10. The addition of Na(2)SO(4) induces more collapse of the grafted layer than that of NaClO(3) at pH 4 and 7. However, they have a similar effect at pH 10. The shift of resonance unit (ΔRU) in SPR measurements reflects the changes of layer thickness and layer refractive index. At pH 4, ΔRU decreases with ionic strength in the presence of Na(2)SO(4), indicating the decrease of layer thickness or the chain collapse. However, ΔRU exhibits a minimum as the ionic strength increases in the case of NaClO(3). This is because the effects of the layer thickness and refractive index are dominant in the low and high ionic strength regimes, respectively. At pH 7, ΔRU slightly varies with ionic strength in the case of either Na(2)SO(4) or NaClO(3), indicating that the effects of the layer thickness and refractive index are comparable during the layer collapse. At pH 10, the shift in ΔRU suggests that the nonelectrostatic anion adsorption governs the conformational behavior of the PDEM chains.     

Fiber-optic surface plasmon resonance for vapor phase analyses

Fiber-optic sensors based on surface plasmon resonance (SPR) for direct refractive index (RI) measurements of samples with the RI between 1.00 and 1.30 are described. Most applications of SPR sensors are designed to function near the refractive index of water (1.3330 RI). The RI changes of aqueous solution (RI, ca. 1.34) can easily be monitored by silica-fiber (RI, 1.4601 at 550 nm) based SPR sensor. With regard to gas species detection, the fiber-optic SPR sensor must be modified for sensitivity to changes in refractive index near 1.0008 (i.e., RI of air). However, the silica waveguide has a prohibitively high RI for unmodified monitoring of the RI changes of gas. The silica-fiber based SPR probe design presented here is based upon the modification of the probe geometry to the ability to tune the SPR coupling wavelength/angle pair. In this study, the tapered silica-based fiber SPR sensors are shown to directly determine the RI changes of gas species and the density change of dry air.     

Quantifying protein adsorption and function at nanostructured materials: enzymatic activity of glucose oxidase at GLAD structured electrodes

Nanostructured materials strongly modulate the behavior of adsorbed proteins; however, the characterization of such interactions is challenging. Here we present a novel method combining protein adsorption studies at nanostructured quartz crystal microbalance sensor surfaces (QCM-D) with optical (surface plasmon resonance SPR) and electrochemical methods (cyclic voltammetry CV) allowing quantification of both bound protein amount and activity. The redox enzyme glucose oxidase is studied as a model system to explore alterations in protein functional behavior caused by adsorption onto flat and nanostructured surfaces. This enzyme and such materials interactions are relevant for biosensor applications. Novel nanostructured gold electrode surfaces with controlled curvature were fabricated using colloidal lithography and glancing angle deposition (GLAD). The adsorption of enzyme to nanostructured interfaces was found to be significantly larger compared to flat interfaces even after normalization for the increased surface area, and no substantial desorption was observed within 24 h. A decreased enzymatic activity was observed over the same period of time, which indicates a slow conformational change of the adsorbed enzyme induced by the materials interface. Additionally, we make use of inherent localized surface plasmon resonances in these nanostructured materials to directly quantify the protein binding. We hereby demonstrate a QCM-D-based methodology to quantify protein binding at complex nanostructured materials. Our approach allows label free quantification of protein binding at nanostructured interfaces.     

The characterization of biomolecular secondary structures by surface plasmon resonance

Recently there has been considerable interest in using surface plasmon resonance (SPR) for the measurement of conformational changes of immobilized biomolecules that are induced by an exogenous analyte. While a number of studies have shown the analytical utility of such measurements, there has been no report which characterizes the specific secondary structure that actuates the change in SPR signal. The use of SPR to indicate the type of secondary structure present in two immobilized polypeptides, poly-L-lysine (PL) and poly-L-glutamic acid (PGA), and a globular protein, concanavalin A (Con A) is described in this report. The PL, PGA and Con A were modified with N-succinimidyl 3-(2-pyridyldithiol) propionate (SPDP) to introduce disulfide groups to facilitate the attachment onto gold-coated surfaces via self-assembly. Ethanol and 2,2,2-trifluoroethanol (TFE) were used to induce changes in the secondary structure of the immobilized polypeptides and the protein respectively. Using both circular dichroism (CD) and Fourier transform infrared (FTIR) spectroscopies, it has been demonstrated that it is possible to correlate the signal changes observed in SPR to the secondary conformation of the biomolecule. Both CD and FTIR showed that a decrease in SPR signal corresponded to a high content of beta, turn or unordered structures while an increase corresponded to a high alpha-helical content. The sensitivity of the SPR technique is comparable to that obtained in solution with CD and FTIR spectroscopies. These results are the first demonstration that SPR can be used to characterize secondary structures. There is potential, therefore, for SPR to be used as a technique to study secondary conformational changes of immobilized polypeptides and proteins.     

Conformation of glycomimetics in the free and protein-bound state: structural and binding features of the C-glycosyl analogue of the core trisaccharide alpha-D-Man-(1 --> 3)-[alpha-D-Man-(1 --> 6)]-D-Man

The conformational properties of the C-glycosyl analogue of the core trisaccharide alpha-D-Man-(1 --> 3)-[alpha-D-Man-(1 --> 6)]-D-Man in solution have been carefully analyzed by a combination of NMR spectroscopy and time-averaged restrained molecular dynamics. It has been found that both the alpha-1,3- and the alpha-1,6-glycosidic linkages show a major conformational averaging. Unusual Phi ca. 60 degrees orientations for both Phi torsion angles are found. Moreover, a major conformational distinction between the natural compound and the glycomimetic affects to the behavior of the omega(16) torsion angle around the alpha-1 --> 6-linkage. Despite this increased flexibility, the C-glycosyl analogue is recognized by three mannose binding lectins, as shown by NMR (line broadening, TR-NOE, and STD) and surface plasmon resonance (SPR) methods. Moreover, a process of conformational selection takes place, so that these lectins probably bind the glycomimetic similarly to the way they recognize the natural analogue. Depending upon the architecture and extension of the binding site of the lectin, loss or gain of binding affinity with respect to the natural analogue is found.     

Adsorption of hydrophobically modified poly(acrylamide)-co-(acrylic acid) on an amino-functionalized surface and its response to the external solvent environment

The adsorption of hydrophobically modified poly(acrylamide)-co-(acrylic acid), designated as PAM-C14-AA (x%) (x = 5, 10, 20, representing the mole percent of acrylic acid units), at an amino-functionalized silicon surface was studied. The effect of polymer charge density was determined by varying the acrylic acid content of the copolymer. Characteristics of the adsorbed layer were evaluated by atomic force microscopy, water contact angle measurements, and X-ray photoelectron spectroscopy. The results showed that the adsorption behavior of PAM-C14-AA (x%) is influenced by the balance among the electrostatic, hydrogen-bonding, and hydrophobic interactions. Adjusting the solution pH and polymer charge density significantly affects the morphology and thickness of the adsorbed film. Furthermore, it was found that the adsorbed PAM-C14-AA undergoes conformational rearrangements when the surface is wetted by selected organic solvents. The resultant morphology and wettability of the films indicated that the different affinities of the solvents for different segments of PAM-C14-AA (x%) can be considered to be the possible cause of the conformational rearrangements of adsorbed polymer.     

Bimodal swelling responses in microgel thin films

A series of studies on microgel thin films is described, wherein quartz crystal microgravimetry (QCM), surface plasmon resonance (SPR), and atomic force microscopy (AFM) have been used to probe the properties of microstructured polymer thin films as a function of film architecture and solution pH. Thin films composed of pNIPAm-co-AAc microgels were constructed by using spin-coating layer-by-layer (scLbL) assembly with poly(allylamine hydrochloride) (PAH) as a polycationic "glue". Our findings suggest that the interaction between the negatively charged microgels and the positively charged PAH has a significant impact on the pH responsivity of the film. These effects are observable in both the optical and mechanical behaviors of the films. The most significant changes in behavior are observed when the motional resistance of a quartz oscillator is monitored via QCM experiments. Slight changes to the film architecture and alternating the pH of the environment significantly changes the QCM and SPR responses, suggesting a pH-dependent swelling that is dependent on both particle swelling and polyelectrolyte de-complexation. Together, these studies allow for a deeper understanding of the morphological changes that take place in environmentally responsive microgel-based thin films.     

Preparation and characterization of thin films of SiO(x) on gold substrates for surface plasmon resonance studies

We report here on the fabrication and characterization of stable thin films of amorphous silica (SiO(x)) deposited on glass slides coated with a 5 nm adhesion layer of titanium and 50 nm of gold, using the plasma-enhanced chemical vapor deposition (PECVD) technique. The resulting surfaces were characterized using atomic force microscopy (AFM), ellipsometry, contact angle measurements, and surface plasmon resonance (SPR). AFM analysis indicates that homogeneous films of silica with low roughness were formed on the gold surface. The deposited silica films showed excellent stability in different solvents and in piranha solution. There was no significant variation in the thickness or in the SPR signal after these harsh treatments. The Au/SiO(x) interfaces were investigated for their potential applications as new surface plasmon resonance sensor chips. Silica films with thicknesses up to 40 nm allowed visualization of the surface plasmon effect, while thicker films resulted in the loss of the SPR characteristics. SPR allowed further the determination of the silica thickness and was compared to ellipsometric results. Chemical treatment of the SiO(x) film with piranha solution led to the generation of silanol surface groups that have been coupled with a trichlorosilane.     

Temperature‐Induced Swelling and De‐swelling of Thin Poly(N‐Isopropylacrylamide) Gels in Water: Combined Acoustic and Optical Measurements

The temperature‐induced swelling and deswelling of thin layers of poly(N‐isopropylacrylamide) gels in water was measured as a function of cross‐link density and thickness. The collapse behavior was probed via an in situ combination of a quartz‐crystal microbalance (QCM) and a surface plasmon resonance (SPR) spectrometer. The shifts in the SPR coupling angle are explained in terms of decrease of the refractive index inside the film. The evanescent optical wave mostly probes the film's interior properties. The acoustic shear wave emanating from the quartz resonator, on the other hand, propagates to the outer surface of the film, unless the film is very dilute. The acoustic data are dominated by the changes in thickness, rather than in its viscosity. The combination of acoustic and optical measurements, therefore, provides complementary information on the film that can be exploited for sensing applications.     

波长检测型表面等离子体子共振生物传感器测定β-环糊精与血清白蛋白的相互作用

采用自行组装的表面等离子体子共振(SPR)传感装置, 固定入射角, 以波长为变量, 以电荷耦合器件(CCD)为检测系统, 用对金和蛋白质均有较强作用的巯基丙酸作为基底膜, 分别监测了β-环糊精(CD)与人血清白蛋白(HSA)、牛血清白蛋白(BSA)反应的动力学过程, 并分别计算了它们的动力学常数、热力学常数及键合百分率. 此外, 对传感器的再生性也进行了研究. 结果表明, β-CD与HSA, BSA相互作用的平衡常数分别是7.79和51.00 μmol/L, 且键合百分率都很高, 分别是98.77%和94.25%. 这些结果有力地说明了β-CD作为药物载体, 可以提高生物利用度, 延长药物半衰期.     

表面等离子体共振光谱技术与电化学方法联用及其应用

表面等离子体共振（Surface Plasmon Resonance,SPR）技术是利用金属薄膜光学耦合产生的物理光学现象建立的一种非常灵敏的光学分析手段. 近年发展的电化学表面等离子体共振（Electrochemical Surface Plasmon Resonance,EC-SPR）是将时间分辨表面等离子体共振光谱技术与电化学方法联用的一种新技术. 本文介绍了SPR和EC-SPR的基本原理,并重点阐述了时间分辨SPR光谱技术与电化学方法联用及应用,该技术已广泛地应用于反应动态过程研究、生物化学传感器、电极/溶液界面的表征、动力学常数的测定以及生物分子相互作用等领域.