Theoretical mechanistic study on the radical-molecule reaction of CH2OH with NO2

The complex singlet potential energy surface for the reaction of CH2OH with NO2, including 14 minimum isomers and 28 transition states, is explored theoretically at the B3LYP/6-311G(d,p) and Gaussian-3 (single-point) levels. The initial association between CH2OH and NO2 is found to be the carbon-to-nitrogen approach forming an adduct HOCH2NO2 (1) with no barrier, followed by C-N bond rupture along with a concerted H-shift leading to product P1 (CH2O + trans-HONO), which is the most abundant. Much less competitively, 1 can undergo the C-O bond formation along with C-N bond rupture to isomer HOCH2ONO (2), which will take subsequent cis-trans conversion and dissociation to P2 (HOCHO + HNO), P3 (CH2O + HNO2), and P4 (CH2O + cis-HONO) with comparable yields. The obtained species CH2O in primary product P1 is in good agreement with kinetic detection in experiment. Because the intermediate and transition state involved in the most favorable pathway all lie blow the reactants, the CH2OH + NO2 reaction is expected to be rapid, as is confirmed by experiment. These calculations indicate that the title reaction proceeds mostly through singlet pathways; less go through triplet pathways. In addition, a mechanistic comparison is made with the reactions CH3 + NO2 and CH3O + NO2. The present results can lead us to deeply understand the mechanism of the title reaction and may be helpful for understanding NO2-combustion chemistry.     

Cis-trans isomerization of chemically activated 1-methylallyl radical and fate of the resulting 2-buten-1-peroxy radical

The cis-trans isomerization of chemically activated 1-methylallyl is investigated using RRKM/Master Equation methods for a range of pressures and temperatures. This system is a prototype for a large range of allylic radicals formed from highly exothermic (～35 kcal/mol) OH + alkene reactions. Energies, vibrational frequencies, anharmonic constants, and the torsional potential of the methyl group are computed with density functional theory for both isomers and the transition state connecting them. Chemically activated radicals are found to undergo rapid cis-trans isomerization leading to stabilization of significant amounts of both isomers. In addition, the thermal rate constant for trans → cis isomerization of 1-methylallyl is computed to be high enough to dominate reaction with O(2) in 10 atm of air at 700 K, so models of the chemistry of the (more abundant and more commonly studied) trans-alkenes may need to be modified to include the cis isomers of the corresponding allylic radicals. Addition of molecular oxygen to 1-methylallyl radical can form 2-butene-1-peroxy radical (CH(3)CH═CHCH(2)OO(?)), and quantum chemistry is used to thoroughly explore the possible unimolecular reactions of the cis and trans isomers of this radical. The cis isomer of the 2-butene-1-peroxy radical has the lowest barrier (via 1,6 H-shift) to further reaction, but this barrier appears to be too high to compete with loss of O(2).     

Overtone-induced dissociation and isomerization dynamics of the hydroxymethyl radical (CH2OH and CD2OH). I. A theoretical study

The dissociation of the hydroxymethyl radical, CH(2)OH, and its isotopolog, CD(2)OH, following the excitation of high OH stretch overtones is studied by quasi-classical molecular dynamics calculations using a global potential energy surface (PES) fitted to ab initio calculations. The PES includes CH(2)OH and CH(3)O minima, dissociation products, and all relevant barriers. Its analysis shows that the transition states for OH bond fission and isomerization are both very close in energy to the excited vibrational levels reached in recent experiments and involve significant geometry changes relative to the CH(2)OH equilibrium structure. The energies of key stationary points are refined using high-level electronic structure calculations. Vibrational energies and wavefunctions are computed by coupled anharmonic vibrational calculations. They show that high OH-stretch overtones are mixed with other modes. Consequently, trajectory calculations carried out at energies about ~3000 cm(-1) above the barriers reveal that despite initial excitation of the OH stretch, the direct OH bond fission is relatively slow (10 ps) and a considerable fraction of the radicals undergoes isomerization to the methoxy radical. The computed dissociation energies are: D(0)(CH(2)OH → CH(2)O + H) = 10,188 cm(-1), D(0)(CD(2)OH → CD(2)O + H) = 10,167 cm(-1), D(0)(CD(2)OH → CHDO + D) = 10,787 cm(-1). All are in excellent agreement with the experimental results. For CH(2)OH, the barriers for the direct OH bond fission and isomerization are: 14,205 and 13,839 cm(-1), respectively.     

The isomerization of methoxy radical: intramolecular hydrogen atom transfer mediated through acid catalysis

The catalytic ability of water, formic acid, and sulfuric acid to facilitate the isomerization of the CH(3)O radical to CH(2)OH has been studied. It is shown that the activation energies for isomerization are 30.2, 25.7, 4.2, and 2.3 kcal mol(-1), respectively, when the reaction is carried out in isolation and with water, formic acid, or sulfuric acid as a catalyst. The formation of a doubly hydrogen bonded transition state is central to lowering the activation energy and facilitating the intramolecular hydrogen atom transfer that is required for isomerization. The changes in the rate constant for the CH(3)O-to-CH(2)OH isomerization with acid catalysis have also been calculated at 298 K. The largest enhancement in the rate, by over 12 orders of magnitude, is with sulfuric acid. The results of the present study demonstrate the feasibility of acid catalysis of a gas-phase radical isomerization reaction that would otherwise be forbidden.     

Overtone-induced dissociation and isomerization dynamics of the hydroxymethyl radical (CH2OH and CD2OH). II. Velocity map imaging studies

The dissociation of the hydroxymethyl radical, CH(2)OH, and its isotopolog, CD(2)OH, following excitation in the 4ν(1) region (OH stretch overtone, near 13,600 cm(-1)) was studied using sliced velocity map imaging. A new vibrational band near 13,660 cm(-1) arising from interaction with the antisymmetric CH stretch was discovered for CH(2)OH. In CD(2)OH dissociation, D atom products (correlated with CHDO) were detected, providing the first experimental evidence of isomerization in the CH(2)OH ? CH(3)O (CD(2)OH ? CHD(2)O) system. Analysis of the H (D) fragment kinetic energy distributions shows that the rovibrational state distributions in the formaldehyde cofragments are different for the OH bond fission and isomerization pathways. Isomerization is responsible for 10%-30% of dissociation events in all studied cases, and its contribution depends on the excited vibrational level of the radical. Accurate dissociation energies were determined: D(0)(CH(2)OH → CH(2)O + H) = 10,160 ± 70 cm(-1), D(0)(CD(2)OH → CD(2)O + H) = 10,135 ± 70 cm(-1), D(0)(CD(2)OH → CHDO + D) = 10,760 ± 60 cm(-1).     

Generation and characterization of ionic and neutral P(OH) 2 +/. in the gas phase by tandem mass spectrometry and computational chemistry

The bicoordinated dihydroxyphosphenium ion P(OH)2+ (1+) was generated specifically by charge-exchange dissociative ionization of triethylphosphite and its connectivity was confirmed by collision induced dissociation and neutralization-reionization mass spectra. The major dissociation of 1+ forming PO+ ions at m/z 47 involved another isomer, O=P-OH2+ (2+), for which the optimized geometry showed a long P-OH2 bond. Dissociative 70-eV electron ionization of diethyl phosphite produced mostly 1+ together with a less stable isomer, HP(O)OH+ (3+). Ion 2+ is possibly co-formed with 1+ upon dissociative 70-eV electron ionization of methylphosphonic acid. Neutralization-reionization of 1+ confirmed that P(OH)2* (1) was a stable species. Dissociations of neutral 1, as identified by variable-time measurements, involved rate-determining isomerization to 2 followed by fast loss of water. A competitive loss of H occurs from long-lived excited states of 1 produced by vertical electron transfer. The A and B states undergo rate-determining internal conversion to vibrationally highly excited ground state that loses an H atom via two competing mechanisms. The first of these is the direct cleavage of one of the O-H bonds in 1. The other is an isomerization to 3 followed by cleavage of the P-H bond to form O=P-OH as a stable product. The relative, dissociation, and transition state energies for the ions and neutrals were studied by ab initio and density functional theory calculations up to the QCISD(T)/6-311+G(3df,2p) and CCSD(T)/aug-cc-pVTZ levels of theory. RRKM calculations were performed to investigate unimolecular dissociation kinetics of 1. Excited state geometries and energies were investigated by a combination of configuration interaction singles and time-dependent density functional theory calculations.     

N-甲硝胺异构化和分解反应机理和动力学的理论研究

The complex potential energy surface and reaction mechanisms for the unimolecular isomerization and decomposition of methyl-nitramine (CH3NHNO2) were theoretically probed at the QCISD(T)/6-311+G*//B3LYP/6-311+G* level of theory. The results demonstrated that there are four low-lying energy channels: (i) the NN bond fission pathway; (ii) a sequence of isomerization reactions via CH3NN(OH)O; (IS2a); (iii) the HONO elimination pathway; (iv) the isomerization and the dissociation reactions via CH3NHONO (IS3). The rate constants of each initial step (rate-determining step) for these channels were calculated using the canonical transition state theory. The Arrhenius expressions of the channels over the temperature range 298-2000 K are k6(T)=1014:8e-46:0=RT , k7(T)=1013:7e-42:1=RT , k8(T)=1013:6e-51:8=RT and k9(T)=1015:6e-54:3=RT s-1, respectively. The calculated overall rate constants is 6.9￡10-4 at 543 K, which is in good agreement with the experimental data. Based on the analysis of the rate constants, the dominant pathway is the isomerization reaction to form CH3NN(OH)O at low temperatures, while the NN bond fission and the isomerization reaction to produce CH3NHONO are expected to be competitive with the isomerization reaction to form CH3NN(OH)O at high temperatures.     

Theoretical study on the mechanism of the CH2F + NO2 reaction

Despite the importance of the Fluoromethyl radicals in combustion chemistry, very little experimental information on their reactions toward stable molecules is available in the literature. Motivated by recent laboratory characterization about the reaction kinetics of Chloromethyl radicals with NO2, we carried out a detailed potential energy survey on the CH2F + NO2 reaction at the B3LYP/6-311G(d,p) and MC-QCISD (single-point) levels as an attempt toward understanding the CH2F + NO2 reaction mechanism. It is shown that the CH2F radical can react with NO2 to barrierlessly generate adduct a (H2FCNO2), followed by isomerization to b1 (H2FCONO-trans) which can easily interconvert to b2 (H2FCONO-cis). Subsequently, Starting from b (b1, b2), the most feasible pathway is the C--F and N--O1 bonds cleavage along with N--F bond formation of b (b1, b2) leading to P1 (CH2O + FNO), or the direct N--O1 weak-bond fission of b (b1, b2) to give P2 (CH2FO + NO), or the 1,3-H-shift associated with N--O1 bond rupture of b1 to form P3 (CHFO + HNO), all of which may have comparable contribution to the reaction CH2F + NO2. Much less competitively, b2 either take the 1,4-H-shift and O1--N bond cleavage to form product P4 (CHFO + HON) or undergo a concerted H-shift to isomer c2 (HFCONOH), followed by dissociation to P4. Because the rate-determining transition state (TSab1) in the most competitive channels is only 0.3 kcal/mol higher than the reactants in energy, the CH2F + NO2 reaction is expected to be rapid, and may thus be expected to significantly contribute to elimination of nitrogen dioxide pollutants. The similarities and discrepancies among the CH2X + NO2 (X = H, F, and Cl) reactions are discussed in terms of the electronegativity of halogen atom. The present article may assist in future experimental identification of the product distributions for the title reaction, and may be helpful for understanding the halogenated methyl chemistry.     

The dissociation chemistry of ionized methyl carbamate and its isomers revisited: theory and experiment in concert

Early combined computational and experimental studies by J.K. Terlouw c.s. in Refs. 1-3 propose that low-energy methyl carbamate ions, NH(2)COOCH(3)(?+) (MC-1), rearrange into distonic ions NH(2)C(OH)OCH(2)(?+) and hydrogen-bridged radical cations [NH(2)C=O--H--OCH(2)](?+) (MC-5) en route to the observed losses of HCO(?) and CO. In this study, we report on the generation of ions MC-5 by decarbonylation of ionized methyl oxamate NH(2)COCOOCH(3)(?+). Theory and experiment agree that ion MC-5 is a key intermediate in the dissociation of low-energy ions MC-1. The subsequent HCO(?) loss, however, may not proceed via the route proposed in Ref. 2, but rather by an entirely different mechanism involving proton-transport catalysis (PTC) in ion MC-5. This view is further supported by the dissociation behaviour of the MC-5 isotopologue [ND(2)C=O--D--OCH(2)](?+), which is conveniently generated from the d(3)-labelled glycolamide ion DOCH(2)C(=O)ND(2)(?+).     

Hydrogen-atom tunneling in isomerization around the C-O bond of 2-chloro-6-fluorophenol in low-temperature argon matrixes

Infrared spectra of 2-chloro-6-fluorophenol in argon matrixes at 20 K revealed the presence of a "Cl-type" isomer, which has the OH···Cl hydrogen bond, but no "F-type" isomer with OH···F bonding, in striking contrast to the existence of both isomers in the gas and liquid phases at room temperature. This finding suggests that the F-type isomer changes to the more stable Cl-type one by hydrogen-atom tunneling in the matrixes. Similar experiments on the OD···X analog species were performed to confirm the tunneling isomerization, resulting in an O-D stretching band of the F-type isomer appearing as well as that of the Cl type, like the spectra reported in the gas and liquid phases. This implies that tunneling migration of the D atom is inhibited in the argon matrix. In addition, UV-induced photoreactions of 2-chloro-6-fluorophenol were studied by a joint use of matrix-isolation IR spectroscopy assisted by density functional theory calculations. It was found that 2-fluorocyclopentadienylidenemethanone and 4-chloro-2-fluorocyclohexadienone were produced from the Cl type; the former was by the Wolff rearrangement after dissociation of the H atom in the OH group and the Cl atom, and the latter was by intramolecular migration of the H and Cl atoms. As for the deuterated F-type isomer, however, 2-chlorocyclopentadienylidenemethanone was produced by the Wolff rearrangement after dissociation of the D atom in the OD group and the F atom, besides other photoproducts of the deuterated Cl-type isomer. It is thus concluded that the tunneling isomerization around the C-O bond occurs in the OH···X species but not in the OD···X species.     

Kinetics and mechanism of a catalytic chloride ion effect on the dissociation of model siderophore hydroxamate-iron(III) complexes

Proton-driven ligand dissociation kinetics in the presence of chloride, bromide, and nitrate ions have been investigated for model siderophore complexes of Fe(III) with the mono- and dihydroxamic acid ligands R(1)C(=O)N(OH)R(2) (R(1) = CH(3), R(2) = H; R(1) = CH(3), R(2) = CH(3); R(1) = C(6)H(5), R(2) = H; R(1) = C(6)H(5), R(2) = C(6)H(5)) and CH(3)N(OH)C(=O)[CH(2)](n)C(=O)N(OH)CH(3) (H(2)L(n); n = 2, 4, 6). Significant rate acceleration in the presence of chloride ion is observed for ligand dissociation from the bis(hydroxamate)- and mono(hydroxamate)-bound complexes. Rate acceleration was also observed in the presence of bromide and nitrate ions but to a lesser extent. A mechanism for chloride ion catalysis of ligand dissociation is proposed which involves chloride ion dependent parallel paths with transient Cl(-) coordination to Fe(III). The labilizing effect of Cl(-) results in an increase in microscopic rate constants on the order of 10(2)-10(3). Second-order rate constants for the proton driven dissociation of dinuclear Fe(III) complexes formed with H(2)L(n)() were found to vary with Fe-Fe distance. An analysis of these data permits us to propose a reactive intermediate of the structure (H(2)O)(4)Fe(L(n)())Fe(HL(n))(Cl)(OH(2))(2+) for the chloride ion dependent ligand dissociation path. Environmental and biological implications of chloride ion enhancement of Fe(III)-ligand dissociation reactions are presented.     

What ion is generated when ionizing acetonitrile?

It has long been assumed that ionizing neutral acetonitrile produces ions with the same atomic connectivity, CH(3)CN(+*). Recent calculations on the C(2)H(3)N(+*) potential energy surface have suggested that it may be difficult to generate pure CH(3)CN(+*) when ionizing acetonitrile. We have probed the interconversion of CH(3)CN(+*) and its lower energy isomer CH(2)CNH(+*) by calculation, collision-induced dissociation mass spectrometry and ion-molecule reaction. The latter ion, ionized ketenimine, is co-generated upon electron or chemical ionization of neutral acetonitrile in the ion source of a mass spectrometer. An estimate of the ratio of the two isomers can be obtained from their respective ion-molecule reactions with CO(2) or COS. CH(3)CN(+*) reacts by proton-transfer with CO(2) and charge transfer with COS, whereas CH(2)CNH(+*) is unreactive.     

Photodissociation and photoisomerization of alpha-fluorotoluene and 4-fluorotoluene in a molecular beam

The photodissociation of jet-cooled alpha-fluorotoluene and 4-fluorotoluene at 193 and 248 nm was studied using vacuum ultraviolet (vuv) photoionization/multimass ion imaging techniques as well as electron impact ionization/photofragment translational spectroscopy. Four dissociation channels were observed for alpha-fluorotoluene at both 193 and 248 nm, including two major channels C6H5CH2F-->C6H5CH2 (or C7H7)+F and C6H5CH2F-->C6H5CH (or C7H6)+HF and two minor channels C6H5CH2F-->C6H5CHF+H and C6H5CH2F-->C6H5+CH2F. The vuv wavelength dependence of the C7H7 fragment photoionization spectra indicates that at least part of the F atom elimination channel results from the isomerization of alpha-fluorotoluene to a seven-membered ring prior to dissociation. Dissociation channels of 4-fluorotoluene at 193 nm include two major channels C6H4FCH3-->C6H4FCH2+H and C6H4FCH3-->C6H4F+CH3 and two minor channels C6H4FCH3-->C6H5CH2 (or C7H7)+F and C6H4FCH3-->C6H5CH (or C7H6)+HF. The dissociation rates for alpha-fluorotoluene at 193 and 248 nm are 3.3 x 10(7) and 5.6 x 10(5) s(-1), respectively. The dissociation rate for 4-fluorotoluene at 193 nm is 1.0 x 10(6) s(-1). An ab initio calculation demonstrates that the barrier height for isomerization from alpha-fluorotoluene to a seven-membered ring isomer is much lower than that from 4-fluorotoluene to a seven-membered ring isomer. The experimental observed differences of dissociation rates and relative branching ratios between alpha-fluorotoluene and 4-fluorotoluene may be explained by the differences in the six-membered ring to seven-membered ring isomerization barrier heights, F atom elimination threshold, and HF elimination threshold between alpha-fluorotoluene and 4-fluorotoluene.     

Structural characterization and differentiation of modified isomeric tryptophans

Different mass spectrometry (MS) techniques have been applied to the study of modified tryptophan isomers obtained by photochemical reactions. The gas phase behavior of the molecular ions and the most abundant fragment ions produced under electron ionization has been selectively studied by MS/MS experiments. Both the fragmentation reactions occurring in the ion source, as well as those produced under collision-induced dissociation conditions have allowed to characterize and differentiate each isomer from the others. Investigation of a bisubstituted derivative has been useful in the rationalization of the gas phase behavior of this series of modified tryptophans. This study has allowed the evaluation of the role played by the substituents and their positions at the indolic ring on the gas phase decompositions that are distinctive and selective for each isomer. The occurrence of regiospecific reactions suggests that isomerization phenomena do not occur either in the molecular ions or in the main fragment ions in the gas phase.     

Ion/molecule reactions in the orifice-skimmer region of an atmospheric pressure Penning ionization mass spectrometer

Atmospheric pressure Penning ionization mass spectra of methanol were measured as functions of Ar or He gas pressure in the first vacuum chamber, the position of the skimmer, and the voltage applied between the orifice and the skimmer. When the orifice and the skimmer were coaxial with a distance of 4 mm, the distribution of CH3OH2+(CH3OH)n clusters was only weakly dependent on both Ar pressure (in the range of 19-220 Pa) and orifice-skimmer voltage (in the range of 1-45 V). The ion/molecule reaction CH3OH2+ + CH3OH --> CH3+(CH3OH) + H2O was observed in the free jet expansion, especially at high orifice-skimmer voltage values. When the orifice and the skimmer were off-centered and the distance between them was increased to 18 mm, the formation of large CH3OH2+(CH3OH)n clusters, as well as their dissociation, were seen. The endothermic proton transfer reaction, CH3+(CH3OH) + CH3OH --> CH3OH2+ + CH3OCH3, occurred at high orifice-skimmer voltage. The collision-induced dissociation of cluster ions by He gas in the first vacuum chamber was much more efficient than by Ar. These results demonstrated that the mass spectra are highly dependent on skimmer position and on orifice-skimmer voltage and that ions observed by mass spectrometry do not necessarily reflect the abundance of ions produced in the atmospheric pressure ion source.     

Dissociation of toluene cation: a new potential energy surface

The potential energy surface (PES) for the formation of tropylium and benzylium ions from toluene cation (1) has been explored theoretically. Quantum chemical calculations at the B3LYP/6-311++G and G3//B3LYP levels were performed. A pathway to form o-isotoluene (5-methylene-1,3-cyclohexadiene) cation (5) from 1 was found. The isomerization occurs by two consecutive 1,2-H shifts from CH(3) to the ortho position of the aromatic ring via a distonic benzenium cation (2), which is also an intermediate in the well-known isomerization of 1 to cycloheptatriene cation (4). Since the barrier for the formation of 2 is the highest in the two isomerization pathways, 1, 4, and 5 are interconvertible energetically prior to dissociation. The benzylium ion can be produced via 5 as well as from 1 and the tropylium ion via 4. Rice-Ramsperger-Kassel-Marcus model calculations were carried out based on the obtained PES. The result agrees with previous experimental observations. From a theoretical analysis of kinetics of the isomerizations and dissociations, we suggest that 5 plays an important role in the formation of C(7)H(7)(+) from 1.     

Nature of Cp*MoO2+ in water and intramolecular proton-transfer mechanism by stopped-flow kinetics and density functional theory calculations

A stopped-flow study of the Cp*MoO3- protonation at low pH (down to zero) in a mixed H2O-MeOH (80:20) solvent at 25 degrees C allows the simultaneous determination of the first acid dissociation constant of the oxo-dihydroxo complex, [Cp*MoO(OH)2]+ (pKa1 = -0.56), and the rate constant of its isomerization to the more stable dioxo-aqua complex, [Cp*MoO2(H2O)]+ (k-2 = 28 s-1). Variable-temperature (5-25 degrees C) and variable-pressure (10-130 MPa) kinetics studies have yielded the activation parameters for the combined protonation/isomerization process (k-2/Ka1) from Cp*MoO2(OH) to [Cp*MoO2(H2O)]+, viz., DeltaH++= 5.1 +/- 0.1 kcal mol-1, DeltaS++ = -37 +/- 1 cal mol-1 K-1, and DeltaV++ = -9.1 +/- 0.2 cm3 mol-1. Computational analysis of the two isomers, as well as the [Cp*MoO2]+ complex resulting from the dissociation of water, reveals a crucial solvent effect on both the isomerization and the water dissociation energetics. Introducing a solvent model by the conductor-like polarizable continuum model and especially by explicitly inclusion of up to three water molecules in the calculations led to the stabilization of the dioxo-aqua species relative to the oxo-dihydroxo isomer and to the substantial decrease of the energy cost for the water dissociation process. The presence of a water dissociation equilibrium is invoked to account for the unusually low effective acidity (pKa1' = 4.19) of the [Cp*MoO2(H2O)]+ ion. In addition, the computational study reveals the positive role of external water molecules as simultaneous proton donors and acceptors, having the effect of dramatically lowering the isomerization energy barrier.     

The cysteine radical cation: structures and fragmentation pathways

A theoretical study on the structures, relative energies, isomerization reactions and fragmentation pathways of the cysteine radical cation, [NH(2)CH(CH(2)SH)COOH].+, is reported. Hybrid density functional theory (B3LYP) has been used in conjunction with the 6-311++G(d,p) basis set. The isomer at the global minimum, Captodative-1, has the structure NH(2)C.(CH(2)SH)C(OH)(2)+; the stability of this ion is attributed to the captodative effect in which the NH(2) functions as a powerful pi-electron donor and C(OH)(2)+ as a powerful pi-electron acceptor. Ion Distonic-S-1, H(3)N(+)CH(CH(2)S.)COOH, in which the radical is formally situated on the S atom, is higher in enthalpy (DeltaH degrees (0)) than Captodative-1 by 6.1 kcal mol(-1), but is lower in enthalpy than another isomer Distonic-C-1, H(3)N(+)C.(CH(2)SH)COOH, by 8.2 kcal mol(-1). Isomerization of the canonical radical cation of cysteine, [H(2)NCH(CH(2)SH)COOH].+, (Canonical-1), to Captodative-1 has an enthalpy of activation of 25.8 kcal mol(-1), while the barrier against isomerization of Canonical-1 to Distonic-S-1 is only 9.6 kcal mol(-1). Two additional transient tautomers, one with the radical located at C(alpha) and the charge on SH(2), and the other a carboxy radical with the charge on NH(3), are reported. Plausible fragmentation pathways (losses of small molecules, CO(2), CH(2)S, H(2)S and NH(3), and neutral radicals COOH. , HSCH(2). and NH(2).) from Canonical-1 are examined.     

Sites of reaction of pilocarpine

Analysis of the sites of reaction of a biologically important compound, pilocarpine, a molecule with imidazole and butyrolactone rings connected by a methylene bridge, has been accomplished in a quadrupole ion trap with the aim of characterizing its structure/reactivity relationships. Ion-molecule reactions of pilocarpine with chemical ionizing agents, dimethyl ether (DME), 2-methoxyethanol, and trimethyl borate (TMB), along with collision-activated dissociation elucidated the reaction sites of pilocarpine and made possible the comparison of structural features that affect sites of reaction. Based on MS/MS experiments, methylation occurs on the imidazole ring upon reactions with CH3OCH2+ or (CH3OCH2CH2OH)H+ ions but methylation occurs on the lactone ring for reactions with (CH3O)2B+ ions. Bracketing experiments with two model compounds, alpha-methyl-gamma-butyrolactone and N-methyl imidazole, show the imidazole ring to have a greater gas-phase basicity and methyl cation affinity than the lactone ring. The contrast of methylation by TMB ions on the lactone ring is explained by initial addition of the dimethoxyborinium ion, (CH3O)2B+, on the imidazole ring with subsequent collisional activation promoting an intramolecular transfer of a methyl group to the lactone ring with concurrent loss of CH3OBO. Semiempirical molecular orbital calculations are undertaken to further address the favored reaction sites.     

Insight into selected reactions in low-temperature dimethyl ether combustion from Born-Oppenheimer molecular dynamics

Dimethyl ether is under consideration as an alternative diesel fuel. Its combustion chemistry is as yet ill-characterized. Here we use Born-Oppenheimer molecular dynamics (BOMD) based on DFT-B3LYP forces to investigate the short-time dynamics of selected features of the low-temperature dimethyl ether (DME) oxidation potential energy surface. Along the chain propagation pathway, we run BOMD simulations from the transition state involving the decomposition of (*)CH(2)OCH(2)OOH to two CH(2)=O and an (*)OH radical. We predict that formaldehyde C-O stretch overtones are excited, consistent with laser photolysis experiments. We also predict that O-H overtones are excited for the (*)OH formed from (*)CH(2)OCH(2)OOH dissociation. We also investigate short-time dynamics involved in chain branching. First, we examine the isomerization transition state of (*)OOCH(2)OCH(2)OOH --> HOOCH(2)OCHOOH. The latter species is predicted to be a short-lived metastable radical that decomposes within 500 fs to hydroperoxymethyl formate (HPMF; HOOCH(2)OC(=O)H) and the first (*)OH of chain branching. The dissociation of HOOCH(2)OCHOOH exhibits non-RRKM behavior in its lifetime profile, which may be due to conformational constraints or slow intramolecular vibrational energy transfer (IVR) from the nascent H-O bond to the opposite end of the radical, where O-O scission occurs to form HPMF and (*)OH. In a few trajectories, we see HOOCH(2)OCHOOH recross back to (*)OOCH(2)OCH(2)OOH because the isomerization is endothermic, with only an 8 kcal/mol barrier to recrossing. Therefore, some inhibition of chain-branching may be due to recrossing. Second, trajectories run from the transition state leading to the direct decomposition of HPMF (an important source of the second (*)OH radical in chain branching) to HCO, (*)OH, and HC(=O)OH show that these products can recombine to form many other possible products. These products include CH(2)OO + HC(=O)OH, H(2)O + CO + HC(=O)OH, HC(=O)OH + HC(=O)OH, and HC(=O)C(=O)H + H(2)O, which (save CH(2)OO + HC(=O)OH) are all more thermodynamically stable than the original HCO + (*)OH + HC(=O)OH products. Moreover, the multitude of extra products suggest that standard statistical rate theories cannot completely describe the reaction kinetics of significantly oxygenated compounds such as HPMF. These secondary products consume the second (*)OH required for explosive combustion, suggesting an inhibition of DME fuel combustion is likely.