Reactive sulfur species: kinetics and mechanisms of the oxidation of cysteine by hypohalous acid to give cysteine sulfenic acid

Cysteine sulfenic acid has been generated in alkaline aqueous solution by oxidation of cysteine with hypohalous acid (HOX, X = Cl or Br). The kinetics and mechanisms of the oxidation reaction and the subsequent reactions of cysteine sulfenic acid have been studied by stopped-flow spectrophotometry between pH 10 and 14. Two reaction pathways were observed: (1) below pH 12, the condensation of two sulfenic acids to give cysteine thiosulfinate ester followed by the nucleophilic attack of cysteinate on cysteine thiosulfinate ester and (2) above pH 10, a pH-dependent fast equilibrium protonation of cysteine sulfenate that is followed by rate-limiting comproportionation of cysteine sulfenic acid with cysteinate to give cystine. The observation of the first reaction suggests that the condensation of cysteine sulfenic acid to give cysteine thiosulfinate ester can be competitive with the reaction of cysteine sulfenic acid with cysteine.     

Theoretical study on the mechanism of the oxygen activation process in cysteine dioxygenase enzymes

Cysteine dioxygenase (CDO) is a vital enzyme for human health involved in the biodegradation of toxic cysteine and thereby regulation of the cysteine concentration in the body. The enzyme belongs to the group of nonheme iron dioxygenases and utilizes molecular oxygen to transfer two oxygen atoms to cysteinate to form cysteine sulfinic acid products. The mechanism for this reaction is currently disputed, with crystallographic studies implicating a persulfenate intermediate in the catalytic cycle. To resolve the dispute we have performed quantum mechanics/molecular mechanics (QM/MM) calculations on substrate activation by CDO enzymes using an enzyme monomer and a large QM active region. We find a stepwise mechanism, whereby the distal oxygen atom of the iron(II)-superoxo complex attacks the sulfur atom of cysteinate to form a ring structure, followed by dioxygen bond breaking and the formation of a sulfoxide bound to an iron(IV)-oxo complex. A sulfoxide rotation precedes the second oxygen atom transfer to the substrate to give cysteine sulfinic acid products. The reaction takes place on several low-lying spin-state surfaces via multistate reactivity patterns. It starts in the singlet ground state of the iron(II)-superoxo reactant and then proceeds mainly on the quintet and triplet surfaces. The initial and rate-determining attack of the superoxo group on the cysteinate sulfur atom involves a spin-state crossing from singlet to quintet. We have also investigated an alternative mechanism via a persulfenate intermediate, with a realignment of hydrogen bonding interactions in the substrate binding pocket. However, this alternative mechanism of proximal oxygen atom attack on the sulfur atom of cysteinate is computed to be a high-energy pathway, and therefore, the persulfenate intermediate is unlikely to participate in the catalytic cycle of CDO enzymes.     

Reactive sulfur species: kinetics and mechanism of the equilibrium between cysteine sulfenyl thiocyanate and cysteine thiosulfinate ester in acidic aqueous solution

The kinetics and mechanism of the hydrolysis of cysteine sulfenyl thiocyanate (CySSCN) to give cysteine thiosulfinate ester (CyS(=O)SCy) have been investigated between pH 0 and 4. The reaction is reversible. The hydrolysis of CySSCN is second-order in [CySSCN] and inverse first-order in [H+] and [SCN-]. The following mechanism is proposed for the hydrolysis of CySSCN (where the charge depends upon the pH): CySSCN0/+ + H2O <==>CySOH0/+ + SCN- + H+, CySOH0/+ + CySSCN0/+ --> CyS(=O)SCy0/+/2+ + SCN- + H+; k1 = 3.36 +/- 0.01 x 10-3 s-1, K1k2 = 0.13 +/- 0.05 Ms-1 (which yields k2/k-1 = 39 M). The observed rate law rules out alternative mechanisms for 1 0.4 M). The following mechanism is proposed: CyS(=O)SCy2+ + H+ <==> CyS(OH)=SCy3+, Ka; CyS(OH)SCy3+ + SCN- --> CySOH+ + CySSCN+, k-2 = 0.239 +/- 0.007 M-2s-1/Ka M-1. Since cysteine sulfenic acids are known to play an important function in many enzymes, and SCN- exists in abundance in physiologic fluids, we discuss the possible role of sulfenyl thiocyanates in vivo.     

Boron doped diamond and glassy carbon electrodes comparative study of the oxidation behaviour of cysteine and methionine

The electrochemical oxidation behaviour at boron doped diamond and glassy carbon electrodes of the sulphur-containing amino acids cysteine and methionine, using cyclic and differential pulse voltammetry over a wide pH range, was compared. The oxidation reactions of these amino acids are irreversible, diffusion-controlled pH dependent processes, and occur in a complex cascade mechanism. The amino acid cysteine undergoes similar three consecutive oxidation reactions at both electrodes. The first step involves the oxidation of the sulfhydryl group with radical formation, that undergoes nucleophilic attack by water to give an intermediate species that is oxidized in the second step to cysteic acid. The oxidation of the sulfhydryl group leads to a disulfide bridge between two similar cysteine moieties forming cysteine. The subsequent oxidation of cystine occurs at a higher potential, due to the strong disulfide bridge covalent bond. The electro-oxidation of methionine at a glassy carbon electrode occurs in two steps, corresponding to the formation of sulfoxide and sulfone, involving the adsorption and protonation/deprotonation of the thiol group, followed by electrochemical oxidation. Methionine undergoes a one-step oxidation reaction at boron doped diamond electrodes due to the negligible adsorption, and the oxidation also leads to the formation of methionine sulfone.     

Investigation of the formation of poly(ethylene terephthalate) with model molecules: Kinetics and mechanism of the catalytic esterification and alcoholysis reactions. I. Carboxylic acid catalysis (monofunctional reactants)

Monofunctional compounds (benzoic acid, heptyl alcohol, and 2-butoxy-ethanol) were used to investigate the kinetics of the esterification and the alcoholysis reactions. Carboxylic acids (benzoic acid) are the only catalysts present in the reaction medium. The factors which influence the kinetics of the esterification reaction were studied: the nature of the carboxylic acid (substituents on the benzene ring), the nature of the alcohol, the composition of the reaction medium (alcohol alone or with another solvent, ester, or water). The results point out for an acyl type (A_AC2) mechanism. The alcoholysis reaction needs the presence of carboxylic acid as a catalyst to occur significantly. A similar mechanism is proposed for both reactions: nucleophilic attack by the oxygen atom of the alcohol at the ion pair formed by protonation of the acid (esterification reaction) or by protonation of the ester (alcoholysis).     

Mechanism of activation of an immunosuppressive drug: azathioprine. Quantum chemical study on the reaction of azathioprine with cysteine.

Azathioprine is an important drug used in the therapy of autoimmune disorders and in preventing graft rejection. Its molecule is composed of two main moieties: mercaptopurine and imidazole derivative. It is an immunosuppressive agent whose biological activity results from its in vivo mercaptolysis mediated by a nucleophilic attack on the C(5i) atom of imidazole ring of the azathioprine molecule. Solvation model SM5.4 with the PM3 Hamiltonian have been applied to model the reaction of azathioprine with cysteine. The employed quantum mechanical method shed new light on the mechanism of the reaction of azathioprine with cysteine in aqueous solution. The obtained results indicated that the first step in the reaction most likely involves the nucleophilic attack of the COO(-) of cysteine on the C(5i) atom of the imidazole ring of azathioprine, followed by a subsequent intramolecular attack of the SH group of the cysteine residue. It was shown that biogenic thiols such as glutathione or cysteine facilitate the first and crucial step of azathioprine metabolism, due to the presence of COO(-), SH, and NH(3)(+) groups in their molecules.     

Enhancement effect of cysteine on anodic stripping voltammetry of copper

The anodic stripping behaviour of copper in the presence of compounds with a mercapto group, such as cysteine, was investigated. In the presence of cysteine, a copper stripping wave at ?0.12 V vs. SCE decreased, and instead a new sharp wave was observed at more positive potential. Its peak height increased with increasing concentration of cysteine, and at 1 × 10^?5M cysteine it became about seven times as large as that observed in the absence of cysteine. Then the method using this enhanced wave was studied for the determination of trace cupric ion. The results were that the relative standard deviation for five repetitive determinations was about 4% at 10^?8M Cu(II) and the detection limit was 6 × 10^?10M Cu(II). From the investigation by means of cyclic voltammetry, it was found that this enhanced wave was due to the transformation from a cupric—cysteinate complex to a mercuric—cysteinate complex.     

Kinetics and mechanism of the addition of nucleophiles to alpha,beta-unsaturated thiol esters

Compounds containing the UV-absorbing chromophores p-methoxycinnamate, p-methoxycinnamide, or anthranilate and an alpha,beta- or alpha,beta,gamma,delta-unsaturated thiol ester (crotonyl or sorboyl) have been prepared. These compounds are subject to nucleophilic attack at the C=C conjugated to the thiol ester carbonyl group. The kinetics of the reactions of these thiol esters with N-acetyl-l-cysteine (NAC), N-acetylcysteamine, and N(2)-acetyl-L-lysine (NAL) have been studied, and the thiol addition products have been identified. The reaction rates increased at higher pH, and the reaction of NAC thiolate with a crotonyl thiol ester in 1:1 (v/v) acetonitrile/aqueous HEPES exhibited buffer catalysis as a result of protonation of the enolate intermediate. At the same concentration, NAC underwent approximately 300-fold more reaction than NAL with a crotonyl thiol ester at pH 9.8. Additionally, a crotonyl thiol ester was found to be 7.9 times more reactive than a sorboyl thiol ester toward NAC addition. These unsaturated thiol esters may serve as a means of covalently binding UVA and UVB sunscreens to the outer layer of skin to provide long-lasting protection.     

Theoretical study of TBD-catalyzed carboxylation of propylene glycol with CO2

The mechanisms for the reaction of propylene glycol (PG) with CO₂ catalyzed by 1,5,7-triazabicyclo[4.4.0]dec-5-ene (TBD) were theoretically investigated by density functional theory (DFT) method at the B3LYP/6-311++G(d,p) level. Through analyzing the optimized structures and energy profiles along the reaction paths, the PG-activated route was identified as the most probable reaction path, in which the rate-determining step was the nucleophilic attack of one of the O atoms in CO₂ on the hydroxyl linked C atom in PG with energy barrier 56.96 kcal/mol. The catalytic role of TBD could be considered as a proton bridge activated by the synergistic action of its N atoms.     

Mechanism of water photooxidation reaction at atomically flat TiO2 (rutile) (110) and (100) surfaces: dependence on solution pH

The mechanism of water photooxidation reaction at atomically flat n-TiO(2) (rutile) surfaces was investigated in aqueous solutions of various pH values, using photoluminescence (PL) measurements. The PL bands, which peaked at around 810 and 840 nm for the (110) and (100) surfaces, respectively, were assigned to radiative transitions between conduction-band electrons and surface-trapped holes (STH), [Ti-O=Ti(2)](s)+, formed at triply coordinated (normal) O atoms at the surface lattice. The PL intensity (I(PL)) decreased stepwise with increasing solution pH, namely, it sharply decreased at around pH 4, near the point of zero charge of TiO(2) (about 5), and then rapidly decreased to zero near pH 13. The first sharp decrease around pH 4 is attributed to the increased rate of nucleophilic attack of a water molecule to a hole at a site of surface bridging oxygen (Ti-O-Ti), the density of which increases with increasing pH. The nucleophilic attack is regarded as the main initiating step of the water oxidation reaction in low and intermediate pH. The high PL intensity at low pH is ascribed to slow nucleophilic attack owing to a very low density of Ti-O-Ti by its protonation at the low pH. The second sharp decrease near pH 13 is attributed to formation of surface anionic species like Ti-O- which can be readily oxidized by photogenerated holes. Interrelations between reaction intermediates proposed in this work and those reported by time-resolved laser spectroscopy are discussed.     

Correlation of relative rates of PdCl(2) oxidation of functionalized acyclic alkenes versus alkene ionization potentials, HOMOs, and LUMOs.

Investigations of the title reaction, carried out by plotting logs of the relative reaction rates vs IPs, vs HOMOs, and vs LUMOs, reveal multiple nearly parallel lines of correlation with small negative slopes in each. Overall, the natural grouping into monosubstituted and disubstituted alkenes gives better correlations than that obtained by using all alkenes. Comparison with analogous plots for other reactions indicates that the mechanism for this reaction has similarities to that for hydroboration, the major difference being that the lines in the plots for hydroboration have positive slopes, indicating an electrophilic rate-determining step involving the pi electrons, while those for the title reaction have small negative slopes, indicating a nucleophilic rate-determining step. Of the two reaction mechanisms proposed for the title reaction, only one has a nucleophilic attack at the complexed alkene as the rate-determining step, and therefore, this work supports that reaction mechanism.     

Mechanism of N-to-S acyl transfer of N-(2-hydroxybenzyl) cysteine derivatives and origin of phenol acceleration effect

The mechanism of N-to-S acyl transfer of N-(2-hydroxybenzyl) cysteine derivatives and the origin of acceleration effect of phenol substitutes were investigated by DFT methods.     

Metalation of cyclic pseudopeptidic thiosulfinates with Ni(II) and Zn(II) after ring opening: a mechanistic investigation

Thiosulfinates are an emerging class of oxidized sulfur species that are frequently supposed to be involved in biochemical processes. Reaction of 12- and 10-membered ring pseudopeptidic thiosulfinates 1a (4,4,7,7-tetramethyl-1,3,4,7,8,10-hexahydro-5,6,1,10-benzodithiadiazacyclododecine-2,9-dione 5-oxide) and 1b (3,3,6,6-tetramethyl-1,8-dihydro-4,5,1,8-benzodithiadiazecine-2,7(3H,6H)-dione 4-oxide) with a Ni(II) salt leads after ring cleavage under alkaline conditions to the isolation of diamidato/thiolato/sulfinato complexes. These two thiolato/sulfinato complexes of nickel, which can also be prepared by dioxygen oxidation of the parent diamidato/dithiolato complexes, were characterized by X-ray crystallography. They show a square-planar geometry with a S-bonded sulfinato ligand. A similar reaction between 1b and a Zn(II) salt leads to a thiolato/sulfinato complex with an O-bonded sulfinate via the intermediate formation of a mixed thiolato/sulfinic ester. On the basis of 1H NMR, IR, and mass analyses, the sulfinic ester in the intermediate is proposed to be O-bonded to the zinc center. Then, an in-depth study of the cleavage of these thiosulfinates with the oxyanions RO- and HO- was performed. This led, after trapping of the open species with CH3I, to the identification of three polyfunctionalized products containing a methyl thioether, with either an isothiazolidin-3-one S-oxide, a methyl sulfone, or a methyl sulfinic ester. All of these products arise from a selective nucleophilic attack at the sulfinyl sulfur, promoted either directly by RO- or HO- or by an internal peptidic nitrogen of the thiosulfinate after deprotonation with RO- or HO-.     

Computational DFT investigation of vicinal amide group anchimeric assistance in ether cleavage

Density functional theory (DFT) computations in solvent have been used to investigate the mechanism of anchimeric assistance (by a vicinal amide group) in the acid-induced ether cleavage. The calculations were carried out at the B3LYP/6-31G* level of theory via full geometry optimizations within the IEF-PCM continuum solvent model. Two different mechanisms have been investigated here that were previously hypothesized for the rate-determining step of this process: the first (mechanism A1) involves a protonated amide and an ethereal oxygen as the nucleophile, while the second (mechanism A2) involves protonation of the ethereal oxygen followed by a nucleophilic attack of the amide. Computations clearly show that the second (involving protonation of the less basic site) is the most favorite route and leads to the formation of an oxazolidinic intermediate that triggers ether hydrolysis. Results are produced that are in excellent agreement with the experiments, and a rationale for them is provided, which represents a general interpretative basis for similar anchimerically assisted processes, such as the ones characterizing the glycosidic activity of two very important classes of enzymes: beta-hexosaminidases and O-GlcNAcases.     

General base and general acid catalyzed intramolecular aminolysis of esters. Cyclization of esters of 2-aminomethylbenzoic acid to phthalimidine

Plots of log k(0) vs pH for the cyclization of trifluoroethyl and phenyl 2-aminomethylbenzoate to phthalimidine at 30 degrees C in H(2)O are linear with slopes of 1.0 at pH >3. The values of the second-order rate constants k(OH) for apparent OH(-) catalysis in the cyclization reactions are 1.7 x 10(5) and 5.7 x 10(7) M(-)(1) s(-)(1), respectively. These rate constants are 10(5)- and 10(7)-fold greater than for alkaline hydrolysis of trifluoroethyl and phenyl benzoate. The k(OH) for cyclization of the methyl ester is 7.2 x 10(3) M(-)(1) s(-)(1). Bimolecular general base catalysis occurs in the intramolecular nucleophilic reactions of the neutral species. The value of the Bronsted coefficient beta for the trifluoroethyl ester is 0.7. The rate-limiting step in the general base catalyzed reaction involves proton transfer in concert with leaving group departure. The mechanism involving rate-determining proton transfer exemplified by the methyl ester in this series (beta = 1.0) can then be considered a limiting case of the concerted mechanism. General acid catalysis of the neutral species reaction or a kinetic equivalent also occurs when the leaving group is good (pK(a) 相似文献   

Kinetics and mechanistic study of the reaction of cyclic anhydrides with substituted phenols. Structure-reactivity relationships

[reaction: see text] The kinetic of the reactions of phthalic and maleic anhydrides with different substituted phenols (Z-PhOH with Z = H, m-CH(3), p-CH(3), m-Cl, p-Cl, and m-CN) were studied in aqueous solution. Two kinetic processes well separated in time were observed. The fast one is attributed to the formation of the aryl ester in equilibrium with the anhydride and allows the determination of the rate of nucleophilic attack of the phenol on the anhydride (k(-)(A)). From the slow kinetic process, the equilibrium constant for this reaction was determined. The Bronsted-type plots for the nucleophilic attack of substituted phenols on the anhydrides were linear with slopes beta(Nuc) of 0.45 and 0.56 for phthalic and maleic anhydride, respectively. The results are consistent with a mechanism involving rate-determining nucleophilic attack and also with a concerted mechanism. The calculated effective charge on the atoms involved in the reactions and the Bronsted beta values are consistent with a mechanism involving a concerted or enforced concerted mechanism where a tetrahedral intermediate with significant lifetime is not formed along the reaction coordinate. The latter mechanism is preferred over the stepwise process.     

Silicon-phosphorus analogies : Participation of external nucleophiles to activated processes of racemization and hydrolysis of chlorophosphono derivatives

Kinetic and stereochemical studies show nucleophilic assistance by dimethylformamide (DMF), dimethylacetainide (DMA), hexamethylphosphotriamide (HMPT) and N-methylimidazole (NMI) in racemization and solvolysis of menthylchloro(phenyl)phosphonate, 1a, and O-ethylchloro(phenyl)thiophosphonate, 2. Similar orders of nucleophilic reactivity (Nu = NMI?HMPT>DMF>DMA), and identical rate-laws (v_rac=k [M-Cl] [Nu]² and v_H2O = k' [M-Cl] [H₂O] [Nu]) are consistent with a common mechanism, governed by entropy (?60 u.e< ΔS^≠<?40u.e). Analogies between reaction mechanisms at silicon and phosphorus are clearly evidenced. A two-step process, involving rate-determining attack on a pentacoordinate complex is discussed.     

Reaction of thiols with N-bonded sulfenamide complexes of cobalt(III): steric effect and reaction pathway

The products and kinetics of the reaction of several thiols (RSH = 2-aminoethanethiol, cysteine, penicillamine, cysteine ethyl ester) with N-bonded sulfenamide complexes ([Co(en)(2)(NH(2)S(CH(2))(2)NH(2)](3+) (IA), [Co(en)(2)(NH(2)SCH(2)CH(CO(2)H)NH(2)](3+) (IC), [Co(en)(2)(NH(2)SC(CH(3))(2)CH(CO(2)H)NH(2)](3+) (IP)) have been studied. The reaction proceeds by nucleophilic attack at sulfur with cleavage of the N-S bond to form a disulfide and leave a coordinated NH(3) ligand. The kinetics (pH 4-10) reveal that the deprotonated thiol, RS(-), is the reactive nucleophile and that the N-deprotonated sulfenamide complex is unreactive. The reactions of IP are approximately 10(4) times slower than those of IA or IC, and the reasons and consequences of this large steric effect are discussed. It is concluded, on the basis of these and other observations from the literature, that there will be substantial steric retardation to nucleophilic attack at two-coordinate sulfur in a R-C(CH(3))(2)-S-X-R' unit because of the regiospecificity of the reaction. The acid dissociation constants of IP and the X-ray structure of its bromide salt also are reported.     

The amidoalkylation of aromatic hydrocarbons

The Nyberg procedure (the use of trifluoroacetic acid in chloroform) for the efficient amidoalkylation of aromatic hydrocarbons is limited to substrates more nucleophilic than benzene. The reaction involves protonation of the electrophile, cleavage to a carbonium ion and alkylation of the nucleophile by the carbonium ion. Either the cleavage step or the alkylation step may be rate-determining. The present work identifies some cases where a carbonium ion is formed but fails to alkylate the nucleophile (with benzene and nitro-substituted benzenes as nucleophiles) and other cases where the reaction conditions are not sufficient to permit cleavage of the protonated electrophile (the reactions of N-phthalimidomethylamides).