激光剥蚀-电感耦合等离子体质谱:双外标结合基体归一定量校准策略

定量校准策略是激光剥蚀电感耦合等离子体质谱(AICP-MS)分析技术的重要组成部分,直接影响分析数据的质量.本研究评估了现有玻璃标准物质定值不确定度的相对大小,并探究了NIST、MPI-DING和USGS系列玻璃标准物质之间的基体效应.结果表明,NIST610的定值不确定度优于其它玻璃标准物质,在本实验条件下,NIST、MPI-DING和USGS系列玻璃标准物质之间的基体效应可忽略不计.在此基础上提出了双外标结合基体归一定量校准策略,外标分别为NIST610和StHs6/80-G.此策略克服了由于NIST610主量成分与地质样品差别大而造成的主量元素准确度差以及StHs6/80-G中某些微量元素含量低、定值不确定度较大等缺点.对比采用3种定量校准策略(单外标NSIT610基体归一法、单外标StHs6/80G基体归一法和双外标基体归一法)校准的ML3B-G数据可知,双外标基体归一法有效避免了单外标基体归一法的不足,并提高了分析数据的准确度.采用双外标结合基体归一定量校准策略校准了BCR-2G、CGSG-2和KL-2G中的主量元素和微量元素.结果表明,绝大多数分析数据在定值不确定度范围内,验证了此校准策略的实用性.同时,本研究得到的主量微量元素数据进一步补充了BCR-2G、CGSG-2和KL-2G的定值数据库.     

An Improved Synthesis of A Chemiluminescent Cyclic Hydrazide: N-(7-Aminobutyl)-N-Ethyl-Naphthalene-1,2-Dicarboxylic Hydrazide

A simple method has been developed to synthesize the title compound in 5 steps, with excellent yield.     

A Novel Reagent for Radioiodine Labeling of New Chemical Entities (NCEs) and Biomolecules

Radioiodine labeling of peptides and proteins is routinely performed by using various oxidizing agents such as Chloramine T, Iodobeads, and Iodogen reagent and radioactive iodide (I⁻), although some other oxidizing agents were also investigated. The main objective of the present study was to develop and test a novel reagent, inorganic monochloramine (NH₂Cl), for radioiodine labeling of new chemical entities and biomolecules which is cost-effective, easy to make and handle, and is selective to label amino acids, peptides, and proteins. The data presented in this report demonstrate that the yields of the non-radioactive iodine labeling reactions using monochloramine are >70% for an amino acid (tyrosine) and a cyclic peptide (cyclo Arg-Gly-Asp-d-Tyr-Lys, cRGDyK). No evidence of the formation of N-chloro derivatives in cRGDyK was observed, suggesting that the reagent is selective in iodinating the tyrosine residue in the biomolecules. The method was successfully translated into radioiodine labeling of amino acid, a peptide, and a protein, Bovine Serum Albumin (BSA).     

A Nickel(II)-Mediated Thiocarbonylation Strategy for Carbon Isotope Labeling of Aliphatic Carboxamides

A series of pharmaceutically relevant small molecules and biopharmaceuticals bearing aliphatic carboxamides have been successfully labeled with carbon-13. Key to the success of this novel carbon isotope labeling technique is the observation that ¹³C-labeled Ni^II-acyl complexes, formed from a ¹³CO insertion step with Ni^II-alkyl intermediates, rapidly react in less than one minute with 2,2’-dipyridyl disulfide to quantitatively form the corresponding 2-pyridyl thioesters. Either the use of ¹³C-SilaCOgen or ¹³C-COgen allows for the stoichiometric addition of isotopically labeled carbon monoxide. Subsequent one-pot acylation of a series of structurally diverse amines provides the desired ¹³C-labeled carboxamides in good yields. A single electron transfer pathway is proposed between the Ni^II-acyl complexes and the disulfide providing a reactive Ni^III-acyl sulfide intermediate, which rapidly undergoes reductive elimination to the desired thioester. By further optimization of the reaction parameters, reaction times down to only 11 min were identified, opening up the possibility of exploring this chemistry for carbon-11 isotope labeling. Finally, this isotope labeling strategy could be adapted to the synthesis of ¹³C-labeled liraglutide and insulin degludec, representing two antidiabetic drugs.     

Iolite Based Bulk Normalization as 100% (m/m) Quantification Strategy for Reduction of Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry Transient Signal

Iolite package draw more attention in laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) community in recent years due to its powerful data-handling capacity, excellent signal visualization and open source of calculation codes. In this study, the application of Iolite package was investigated for LA-ICP-MS elemental quantification, and a calculation code for the bulk normalization as 100% (m/m) strategy was compiled. We found that the spline interpolation approach was better than that of linear one for the correction of time-dependent instrument drift. BCR-2G as the quality material was used to assess the proposed code, and the results revealed that the code was practical and reliable. The analytical accuracy was influenced by the used calibration materials. TiO₂, MgO, K₂O and rare earth elements in BCR-2G were slightly off (5%–10%) when NIST SRM 610 as the calibrator. Cr and Mo were higher (10%–30%) than the recommended values when StHs6/80-G was used as the calibrator. The phenomena would be attributed to the matrix effect or the inaccurate values of corresponding calibrators. Three main sources for the LA-ICP-MS combined uncertainty were recognized, including the uncertainty of recommended values of analytes in calibration material, the uncertainty of measured intensity ratios in sample and the error in bulk normalization as 100% (m/m) strategy. A total of 50 elements in CGSG glass reference materials were quantified based on the proposed Iolite code. Major elements (except MnO, CaO and P₂O₅) matched well with the recommended values with a discrepancy of 5%, and the trace elements (except Cr, Ni, Zn, Ga, Mo and Sb) were agreement with the recommended values in 10%. The dataset reported in this study was helpful for the value certification of CGSG reference materials. Overall, the proposed Iolite code broadened the application of Iolite package in the reduction of LA-ICP-MS transient signal for the elemental determination.     

Synthesis of Copper(I) Complexes with Ketimide and Hydrazide Ligands

Copper(I) chloride reacted with lithium ketimides to form tetrameric homoleptic copper(I) ketimide complexes, [Cu(N=CR₂)]₄, where R = t-Bu or Ph. Mesityl copper reacted with excess 1-trimethylsilylmethyl-2,2,-dimethylhydrazine to give the mixed ligand complex (2,4,6-C₆Me₃H₂)Cu₄[N(SiMe₃)NMe₂]₃. Single-crystal X-ray crystallographic studies revealed that the three complexes have eight-member ring structures in which the ring has a hinged or butterfly shape. Although an eight-member ring structure is common for copper(I) amido, alkyl, and aryl clusters, the structure of [Cu(N=C-t-Bu₂)]₄ is unusual because the hinge angle is significantly smaller than is common, resulting in short Cu···Cu contacts compared to related complexes.     

A Novel Strategy for 2,6-Dideoxy-L-Hexoses: An Application to 3-Amino-2,3,6-Trideoxy-L-Lyxo-Hexopyranose (L-Daunosamine)

Abstract

A synthetic strategy wherein C-l/6 of D-glucose are transformed into C-6/1 of L-daunosamine, circumventing the critical step of epimerisation of the C-5 center is described.     

A Novel IMFET Biosensor Strategy for Interleukin-10 Quantification for Early Screening Heart Failure Disease in Saliva

We propose a salivary Interleukin-10 detection strategy as part of an easily integrable Lab-on-Chip and Point-of-Care IMFET for multi-detection Heart Failure (HF) biomarkers. Our developed IMFET showed good linearity between increasing IL-10 concentration and the charge transfer resistance in both standard solutions and real saliva samples with a LOD of 0.02 pg mL⁻¹. Moreover, the cross-selectivity study showed that the developed IMFET was highly selective towards IL-10 against other HF biomarkers. The precision of our IMFET was also evaluated, and the difference between the determined IL-10 concentration using the standard addition method and its expected one is<20 %.     

SugarDrawer: A Web-Based Database Search Tool with Editing Glycan Structures

In life science fields, database integration is progressing and contributing to collaboration between different research fields, including the glycosciences. The integration of glycan databases has greatly progressed collaboration worldwide with the development of the international glycan structure repository, GlyTouCan. This trend has increased the need for a tool by which researchers in various fields can easily search glycan structures from integrated databases. We have developed a web-based glycan structure search tool, SugarDrawer, which supports the depiction of glycans including ambiguity, such as glycan fragments which contain underdetermined linkages, and a database search for glycans drawn on the canvas. This tool provides an easy editing feature for various glycan structures in just a few steps using template structures and pop-up windows which allow users to select specific information for each structure element. This tool has a unique feature for selecting possible attachment sites, which is defined in the Symbol Nomenclature for Glycans (SNFG). In addition, this tool can input and output glycans in WURCS and GlycoCT formats, which are the most commonly-used text formats for glycan structures.     

Copper(II) Complex Containing 4-Fluorophenoxyacetic Acid Hydrazide and 1,10-Phenanthroline: A Prostate Cancer Cell-Selective and Low-Toxic Copper(II) Compound

Prostate Cancer (PCa) is the second leading cause of cancer-related deaths among men worldwide. The treatment of advanced cases is based on chemotherapy, which lacks specificity and efficacy, due to severe side effects and resistance to the traditional drugs. Copper complexes have shown antitumoral efficacy and low toxicity, being considered a promising class of metal-based drugs for the treatment of malignant neoplasms. Thus, the present study aimed to evaluate the cellular effects of a copper(II) complex with 4-fluorophenoxyacetic acid hydrazide and 1,10-phenanthroline (1) on PCa cell lines, as well as the mutagenic/recombinogenic and anticarcinogenic potential of 1 in Drosophila melanogaster. PNT-2 (non-tumorigenic), LNCaP (hormone-responsive PCa) and PC-3 (androgen-independent PCa) cells were cultured, and cytotoxicity was assessed using the MTT assay. The expression levels of the proliferation markers Ki-67 and Cyclin D1 were analyzed by flow cytometry. Furthermore, the Somatic Mutation and Recombination Test (SMART) and the Epithelial Tumor Test (ETT) were performed. Complex 1 was selective to LNCaP cells, significantly reducing Ki-67 and Cyclin D1 expression levels. Sub-toxic concentrations of complex 1 were defined by the toxicity test in D. melanogaster, and no mutagenic/recombinogenic/carcinogenic effects were observed. Anticarcinogenic potential was observed in D. melanogaster, suggesting modulating activity of the complex 1 against Doxorubicin, a drug used as control by its carcinogenic properties. Therefore, complex 1 is a possible starting point for the development of new antitumor agents for the treatment of PCa.     

改进的~(18)O同位素标记法标记蛋白质多肽

针对18O同位素标记反应两个重要影响因素——肽段分散度和胰酶灭活方法,进行了标记条件的改进和灭活方法的优化。在H218O中加入RapigestTM SF助溶剂并微波辅助加热,使α-酪蛋白胰酶酶切肽段的标记效率得到明显改进(18O/16O峰面积比值>99%)。标记后,对胰酶进行还原烷基化化学修饰彻底灭活,使标记后的肽段稳定性显著提高,放置6d不发生回交反应。对标准蛋白质甲状腺球蛋白酶切肽段混合物标记后的质谱实验结果表明:优化的标记方法能快速稳定地标记蛋白质酶切多肽。     

Molecular Isotopic Distribution Analysis (MIDAs) with Adjustable Mass Accuracy

In this paper, we present Molecular Isotopic Distribution Analysis (MIDAs), a new software tool designed to compute molecular isotopic distributions with adjustable accuracies. MIDAs offers two algorithms, one polynomial-based and one Fourier-transform-based, both of which compute molecular isotopic distributions accurately and efficiently. The polynomial-based algorithm contains few novel aspects, whereas the Fourier-transform-based algorithm consists mainly of improvements to other existing Fourier-transform-based algorithms. We have benchmarked the performance of the two algorithms implemented in MIDAs with that of eight software packages (BRAIN, Emass, Mercury, Mercury5, NeutronCluster, Qmass, JFC, IC) using a consensus set of benchmark molecules. Under the proposed evaluation criteria, MIDAs’s algorithms, JFC, and Emass compute with comparable accuracy the coarse-grained (low-resolution) isotopic distributions and are more accurate than the other software packages. For fine-grained isotopic distributions, we compared IC, MIDAs’s polynomial algorithm, and MIDAs’s Fourier transform algorithm. Among the three, IC and MIDAs’s polynomial algorithm compute isotopic distributions that better resemble their corresponding exact fine-grained (high-resolution) isotopic distributions. MIDAs can be accessed freely through a user-friendly web-interface at http://www.ncbi.nlm.nih.gov/CBBresearch/Yu/midas/index.html .

New Copper(II) Complexes Containing 2-Furoic Hydrazide and 5-Nitro-2-Furoic Hydrazide Ligands: Synthesis,Thermal, Magnetic and Spectroscopic Characterization

Two new copper(II) complexes, [Cu₂(L¹)₄(H₂O)₂](SO₄)₄· 2H₂O and [Cu(L²)₂(H₂O)₂]SO₄, were isolated containing 2-furoic hydrazide and 5-nitro-2-furoic hydrazide ligands, respectively. The complexes were characterized by thermal, magnetic and spectroscopic techniques, showing a distorted tetragonal environment around the metal ion. Compound (1), containing 2-furoic hydrazide as the ligand, appears to be dimeric in the solid state, with substituted hydrazine acting as a bidentate bridging ligand. On the contrary, a monomeric species was observed with the 5-nitro-2-furoic hydrazide ligand, probably in the cis configuration, for compound (2). Magnetic measurements for the binuclear copper(II) complex (1) were carried out at low temperatures, in the 2–300 K range, and a magnetic field of 500 G, indicating that besides an intramolecular ferromagnetic interaction between the two Cu(II) centers, for which J/k = 1.07 K, further weak antiferromagnetic interactions between adjacent dimers, with Jz/k =–0.95 K, should be taken into account. However, in MeOH/H₂O solution, evidence of equilibria involving the dimer (1) and the corresponding mononuclear cis and trans species was obtained from e.p.r. spectra.     

Novel Lanthanide(III) Ternary Complexes with Naphthoyltrifluoroacetone: A Synthetic and Spectroscopic Study

A series of lanthanide complexes with general formula [Ln(NTA)₃X] were prapared [Ln = Y ( a ), Er ( b ), Eu ( c ), NTA = naphthoyltrifluoroacetone, X = H₂O ( 1 ), phen = phenanthroline ( 2 ), bpyO1 = 2, 2′‐bipyridine N‐oxide ( 3 ), and bpyO2 = 2, 2′‐bipyridine‐N,N′‐dioxide ( 4 )]. The crystal structures of [Eu(NTA)₃bpyO2] ( 4b ), [Er(NTA)₃bpyO1] ( 3c ), and [Er(NTA)₃phen] ( 2c ) were determined. X‐ray crystallographic analysis reveals that the complexes are of mononuclear structure with three NTA and one ancillary ligand. The photoluminescence spectra of 3c and 4b exhibit strong characteristic emissions arising from Eu³⁺ central ion due to the efficient sensitization of bpyO1 and bpyO2, respectively.     

Late-Stage Halogenation of Peptides,Drugs and (Hetero)aromatic Compounds with a Nucleophilic Hydrazide Catalyst

Unlike its other halogen atom siblings, chlorination of a bioactive compound can change its physiological characteristics, improve its pharmacological profile, and function as a point of diversification through cross-coupling reactions. As a result, it has been a crucial strategy for drug discovery and development. However, functional groups such as amines, amides, hydroxy groups, or carboxylic acids trap the Cl⁺, severely limiting the reactivity and making direct chlorination far too difficult to be practical. Herein, we introduce a nucleophilic sulfonohydrazide catalyst for late-stage halogenation of peptides and drugs. This direct, mild and metal-free protocol shows high functional-group tolerance and is compatible with a range of structurally diverse peptides, drugs and aromatic compounds. Furthermore, DFT studies indicate that the reaction most likely proceeds via a cationic transition state. The gram-scale synthesis, high stability and efficiency of the catalyst provide a facile route for late-stage functionalization and intermediates for further derivatization.     

Identification of Histone deacetylase (HDAC)-Associated Proteins with DNA-Programmed Affinity Labeling

Histone deacetylase (HDAC) is a major class of deacetylation enzymes. Many HDACs exist in large protein complexes in cells and their functions strongly depend on the complex composition. The identification of HDAC-associated proteins is highly important in understanding their molecular mechanisms. Although affinity probes have been developed to study HDACs, they were mostly targeting the direct binder HDAC, while other proteins in the complex remain underexplored. We report a DNA-based affinity labeling method capable of presenting different probe configurations without the need for preparing multiple probes. Using one binding probe, 9 probe configurations were created to profile HDAC complexes. Notably, this method identified indirect HDAC binders that may be inaccessible to traditional affinity probes, and it also revealed new biological implications for HDAC-associated proteins. This study provided a simple and broadly applicable method for characterizing protein-protein interactions.