The molecular structure of cis- and trans-bicyclo [4.2.0]-octane in the gas phase as studied by electron diffraction and molecular mechanics

The molecular structure of Cis- and trans-bicyclo[4.2.0]octane in the gas phase was studied. Molecular mechanics calculations applying Boyd's force Held were used for constraining differences between structural parameters during least squares analysis and for calculating vibrational amplitudes. The cyclohexane ring was found to have a distorted chair conformation, the ring in the cis isomer being flattened along the junction and more twisted in the other part. For the trans compound the reverse is true. The following structural parameters were obtained (r_a-structure):cis: r(C-C)_av. = 1.535 Å. Cyclohexane ring: average bond angle 112.9°; average torsional angle 48°. Cyclobutane ring: average bond angle 88.9°; puckering 157°. The dihedral angle between the bisecting planes of the C(2)-C(1)-C(6)-C(5) and C(8)-C(1)-C(6)-C(7) torsional angles, is 119° - the “connection angle” of the two rings.trans: r(C-C)_av.= 1.532 Å. Cyclohexane ring: average bond angle 110.4° ; average torsional angle 57°. Cyclobutane ring: average bond angle 87.3°; puckering 145°. The “connection angle” is 180° (C₂ symmetry).Comparison is made with structures of related compounds.     

The molecular structures of cis-3-hexene and trans-3-hexene in the gas phase by electron diffraction and molecular mechanical calculations

The molecular structures of cis-3-hexene and of trans-3-hexene in the gas phase have been determined by electron diffraction combined with molecular mechanical calculations. For cis-3-hexene the data indicate the presence of the (+ac, +ac) and the (?ac, +ac) forms. In trans-3 -hexene three rotamers were observed, with an energy sequence E(+ac, +ac) ≈ E(?ac, +ac) < E(ac, sp). The refined r_α⁰-structural parameters are: cis-3-hexene: C-H = 1.073 Å, CC = 1.330 Å, C(sp²)-C(sp³) = 1.505 Å, ∠CCH(in CH₂) = 111.1°, ∠CCC = 111.4°, ∠(CC-C) = 129.1° trans-3-hexene: C-H = 1.078 Å, CC = 1.342 Å, C(sp²)-C(sp³) = 1.506 Å, ∠CCH(in CH₂) = 109.3°, ∠CCC = 112.8, ∠CC—C = 124.1°The agreement between calculated and experimental geometries and vibrational amplitudes is good.     

Molecular structure and conformation of cis-1,3- dichloro-1-propene as determined by gas phase electron diffraction

The molecular structure and conformation of cis-1,3-dichloro-1-propene have been determined by gas phase electron diffraction at a nozzle temperature of 90°C. The molecule exists in a form in which the chlorine atom of the methyl group and the carbon-carbon double bond are gauche to one another. The results for the distance (r_g) and angle (∠_α) parameters are: r(C-H) = 1.078(10)Å, r(CC) = 1.340(5)Å, r(C-C) = 1.508(7)Å, r( =C-Cl) = 1.762(3)Å, r(C-Cl) = 1.806(3)Å, ∠Cl-C-C = 111.7°(1.8), ∠(CC-C) = 125.5°(1.5), ∠Cl-CC = 124.6°(1.6) and ∠H-C-Cl = 111°(5). The torsion-sensitive distances close to the gauche form can be approximated using a dynamic model with a quartic double minimum potential function of the form V(Φ) = V₀[1 + ($\text{Φ}\text{Φ}{}_0$⁴ - 2($\text{Φ}\text{Φ}{}_0$)²], where V_o = 1.1(8) kcal mol^?1 and Φ₀ = 56°(5) (Φ = 0 corresponds to the anti form).     

The molecular structure of 1,1,1-trimethoxyethane in the gas phase as determined by electron diffraction,molecular mechanics calculations and vibratio

The structure of 1,1,1-trimethoxyethane has been studied by electron diffraction in the gas phase. Although this technique cannot discriminate between a GGG (point symmetry C₃) and a TGG (C₁) conformation, vibrational spectra indicate that in the gas phase the C₁ conformer is predominant. Constraints necessary for a satisfactory leastsquares refinement were obtained from molecular mechanics calculations. The molecular geometry as obtained from r_α-refinements is as follows (r_g distances, r_α angles; standard deviations in parentheses): r(C-O central = 1.398 (6) Å, r(C-O)_terminal = 1.431(6)Å, r(C-C) = 1.527 (6) Å, r(C-H) = 1.114 (1) Å, ∠(C-O-C) = 114.0 (4)°, ∠(O-C-H) = 110.7 (4)°; the C-C-O and O-C-0 angles around the central carbon range between 106.6° and 113.1°.     

The structure of trimethoxymethane in the gas phase,an electron diffraction,ab initio and molecular mechanics study

The structure of trimethoxymethane in the gas phase was studied by electron diffraction, ab initio molecular orbital calculations and molecular mechanics. The molecule was found to exist almost exclusively as an asymmetric all-staggered TGG conformer. The electron diffraction structural parameters (r_g distances, r_α angles) as obtained from geometrically consistent r_α-refinements are: r(C-O) central 1.382(6) Å, r(C-O) terminal 1.418(6) Å, r(C-H) 1.112(1) Å, ∠(O-C-O) in the gauche—gauche chain 115.0(1.0)°, in the gauche-anti chains 109.2(0.6)° ∠(C-O-C) 114.3(0.6)°, ∠(O-C-H)_Me 109.9(0.3)°, methyl torsion 68(6)°. The structure is adequately reproduced by molecular mechanics calculations applying Allinger's force field. The structures of methoxymethanes can be explained in terms of the anomeric effect. This is confirmed by ab initio calculations.     

The gas phase molecular structure of silyl formate,determined by electron diffraction

The structure of silyi formate, HCOOSiH₃, in the gas phase is determined by electron diffraction. The principal bond lengths and angles (r_a) are r(Si-O) = 169.5 ± 0.3 pm, r(C-O) = 135.1 ± 0.6 pm, r(C  O) = 120.9 ± 0.7 pm, ∠(C-O-Si) = 116.8 ± 0.5°, ∠(OC-O) = 123.5 ± 0.5°. The silyi group is twisted by 21° away from the planar cis conformation but there is nevertheless a very short (286.5 ±1.0 pm) non-bonded Si ·O contact.     

Molecular structure and conformation of diisopropylamine studied by gas electron diffraction combined with vibrational spectroscopy and molecular mechanics

The molecular structure and conformation of diisopropylamine have been determined by gas electron diffraction with the aid of vibrational spectroscopy and molecular mechanics calculations.Only one conformer with the skeletal geometry of C₂ symmetry has been detected. The dihedral angle, CNCH, has been determined to be 52(4)°. The difference between the NCC angles at the gauche and trans positions with respect to the opposite NC bond is 2.4°. The CNC bond angle, 120.1(10)°, and the CN bond length, 1.470(4) Å, are 8.3° and 0.014 Å larger than the corresponding values of dimethylamine respectively     

The molecular structure of tetramethoxysilane in the gas phase,an electron diffraction study

The molecular structure of tetramethoxysilane was determined in the gas phase by electron diffraction. The molecule has S₄ symmetry, slightly flattened along the axis. The SiO bonds are shorter than in methylsilylether, demonstrating the effect of electronegative substituents on the Si atom. The geometrical parameters (r_a structure) are: Si-O bond 1.613 Å; C-O bond 1.414 Å; C-H bond 1.12 Å; O-Si-O angle bisected by S₄ axis 115.5°; Si-O-C angle 122.3°; O-C-H angle 111°; methoxyl torsional angle 64°; methyl torsional angle 60°.     

The molecular structure and conformation of dichlorotetramethyldisiloxane as determined by gas phase electron diffraction

Dichlorotetramethyldisiloxane is studied by gas-phase electron diffraction at room temperature. The least-squares values of the bond distances (r_g) and bond angles () are: r(C---H)=1.084(5) Å, r(Si---O) = 1.624(2) Å, r(Si---C) = 1.852(2) Å, r(Si---Cl) = 2.067(2) Å, SiOSi = 154.0° (1.5), ClSiO = 110.2° (0.8), ClSiC = 109.6°(0.7), HCSi = 111.7°(1.5), OSiC = 110.0°(0.8), τ₁ (zero corresponds to the Si---Cl bond trans to the Si---O---Si linkage) = 78°(6) and τ₂ = 141°(19). A two-conformer model cannot be ruled out.     

Short diastereoselective synthesis of cis- and trans-hexahydropyrido[2,1-a]isoindole derivatives

A new and highly stereoselective access to 4,10b-trans or 4,10b-cis hexahydropyrido[2,1-a]isoindole derivatives is reported, both requiring an intramolecular Mannich-type reaction as key step. The cis diastereoisomer is obtained in three steps from a 2-alkyl benzaldehyde through the stereoselective formation of a 2,6-cis-disubstituted piperidine, while the trans stereomer is efficiently obtained, in a single step, if a 2-formyl benzoic acid is involved in the Mannich cyclization process.     

An investigation of the molecular structure of cycloheptanone by gas phase electron diffraction

The electron diffraction data of cycloheptanone, collected at 371 K, can be explained using a model of partial pseudorotation, with the symmetrical twist—chair as the mean structure. Ther_g, r_α-structure is characterized by r(C-C) = 1.536 Å, r(C=O) = 1.219 Å, r(C-H) = 1.124 Å, xxxCC(sp²)C = 117.3°, xxx(CCC = 115.5° and xxx(HCH = 103.2°. Approximate values for the constants of the pseudorotation potential are included.     

Stereoselective multigram-scale synthesis of cis- and trans-β-phenylproline derivatives

Efficient routes for the gram-scale preparation of the proline analogues that bear a phenyl substituent attached to the pyrrolidine β carbon (cis- and trans-β-phenylproline) have been developed. The cis derivative was synthesized from N-Boc-β-alanine in six steps and 78% overall yield. The generation of a vinyl triflate with full regiochemical control together with a high-yielding cross-coupling reaction and a completely stereoselective hydrogenation are at the basis of the high efficiency of the procedure. Epimerization of the cis β-phenylproline derivative with lithium bis(trimethylsilyl)amide provided access to the trans isomer.     

Characterization of the photoisomers from cis- and trans-chlordanes, trans-nonachlor and heptachlor epoxide

Irradiation of acetone solutions of trans-chlordane (4a) and trans-nonachlor (4b) with UV light produces new half-cage photoisomers (5a or 6a and 5b or 6b, respectively) with bridging that differs from that of the photoisomers (2 and 8a) obtained from cis-chlordane (1b) and heptachlor epoxide (7). A new photoisomer (10) obtained from heptachlor epoxide is transformed into photoisomer 8a on further irradiation. Detailed PMR and ¹³C-NMR studies establish the structures of the new photoisomers and permit a decision between alternative formulations for the structures of the half-cage photoisomers of heptachlor epoxide and cis-chlordane,     

The molecular structure of selenium oxychloride as studied by electron diffraction

The molecular geometry of selenium oxychloride has been studied by electron diffraction. The internuclear distances (in terms of r_a) are: r(Se-O) 1.612 ± 0.005 Å, r(Se-Cl) 2.204 ± 0.005 Å, r(Cl β O) 3.064 ± 0.012 Å, r(Cl β Cl) 3.295 ± 0.016 Å. The bond angles are ∠Cl-Se-O 105.8 ± 0.7° and ∠ Cl-Se-Cl 96.8 ± 0.7°. The structural parameters of three simple selenium-oxygen compounds are compared with those of their sulphur analogs in terms of the valence shell electron pair repulsion model.     

The molecular structure and conformational composition of epichlorohydrin as determined by gas phase electron diffraction

The molecular structure of gaseous epichlorohydrin has been investigated using electron diffraction data obtained at 67°C. The conformational composition at this temperature is such that the molecules exist predominantly in a gauche-2 conformer (where the C---Cl bond is 160° away from the C---O) bond). Refinements showed that 33% (σ = 4) of the molecule exist in the gauche-1 form. The important distances (r_g) and angle () with the associated uncertainties are r(C---H) = 1.095(5) Å, r(C---O) = 1.442(3) Å, r(C---C) = 1.475(8) Å, r(C---C_M) = 1.523(7) Å, r(C---Cl) = 1.788(2) Å, CCO = 114° (1), CCC_M = 119°(1), ClCC = 108.9° (7), and Tau(ClCCO) = −150°(10) (gauche-2) and Tau(ClCCO) = 78° (10) (gauche-1).     

The molecular structure of diethyl(silyl)amine in the gas phase,determined by electron diffraction

The molecular structure of N(C₂H₅)₂(SiH₃) in the gas phase has been determined by electron diffraction. The SiNC₂ skeleton is a shallow pyramid, with angles CNC 114.5(12)° and SiNC 120.9(5)°, and the methyl groups lie so that one CC bond lies close to the CNC plane, but the other is almost perpendicular to it. Other important parameters (r_a) are: r(SiN) 171.5(3), r(CN) 145.6(4), r(CC) 154.3(8) pm, and ∠NCC 113.6(6)°.     

The molecular structure of tetramethoxymethane in the gas phase: an electron diffraction study

The electron diffraction study of tetramethoxymethane showed that in the gas phase the molecule has S₄ symmetry, flattened along the S₄ axis. Central and peripheral C-O bond lengths are different, consistent with considerations based on the anomeric effect. Comparison is made with ab initio calculations on methanediol. The geometrical parameters (r_g(1) structure) are: central C-O bond 1.395 Å; peripheral C-O bond 1.422 Å; C-H bond 1.11 Å; O-C-O angle bisected by the S₄. axis 114.7°; C-O-C angle 114.0°; O-C-H angle 111.9°; methoxy torsional angle 63.1°; methyl torsional angle 48.5°.     

The formal total synthesis of dragmacidin B, trans-dragmacidin C, and cis- and trans-dihydrohamacanthins A

A facile formal total synthesis of dragmacidin B, trans-dragmacidin C, and cis- and trans-dihydrohamacanthins A is presented. Our approach to these bis(indole) alkaloids involves a one-pot, four-step cross-coupling/deprotection sequence where complete halogen selectivity is observed. A related approach to access the dihydrohamacanthins is also described.