NMR shielding constants in hydrogen molecule isotopomers

We analyze the NMR shielding constants in three isotopomers of the hydrogen molecule: H₂, HD and D₂. The results obtained within the Born?COppenheimer approximation using the coupled-cluster singles-and-doubles model are very close to the previous theoretical values. In particular, the isotope shifts computed using significantly larger basis sets agree with the earlier literature results, confirming the disagreement of these calculations with the available experimental data. To examine the accuracy of the computed isotope shifts, we analyze in addition the relativistic corrections and estimate the role of the adiabatic and nonadiabatic effects. The relativistic corrections appear to be negligible; on the other hand, the changes in the shielding constants due to the adiabatic and nonadiabatic effects may account for the discrepancies between the computed and experimental isotope shifts.     

Molecular-dynamics study of structure II hydrogen clathrates

Molecular-dynamics simulations are used to study the stability of structure II hydrogen clathrates with different H2 guest occupancies. Simulations are done at pressures of 2.5 kbars and 1.013 bars and for temperatures ranging from 100 to 250 K. For a structure II unit cell with 136 water molecules, H2 guest molecule occupancies of 0-64 are studied with uniform occupancies among each type of cage. The simulations show that at 100 K and 2.5 kbars, the most stable configurations have single occupancy in the small cages and quadruple occupancy in the large cages. The optimum occupancy for the large cages decreases as the temperature is raised. Double occupancy in the small cages increases the energy of the structures and causes tetragonal distortion in the unit cell. The spatial distribution of the hydrogen guest molecules in the cages is determined by studying the guest-water and guest-guest radial distribution functions at various temperatures.     

Molecular-dynamics simulations of binary structure II hydrogen and tetrahydrofurane clathrates

The binary structure II hydrogen and tetrahydrofurane (THF) clathrates are studied with molecular-dynamics simulations. Simulations are done at pressures of 120 and 1.013 bars for temperatures ranging from 100 to 273 K. For the small cages of the structure II unit cell, H2 guest molecule occupancies of 0, 16 (single occupancy), and 32 (double occupancy) are considered. THF occupancies of 0-8 in the large cages are studied. For cases in which THF does not occupy all large cages in a unit cell, the remaining large cages can be occupied with sets of four H2 guest molecules. The unit-cell volumes and configurational energies are compared in the different occupancy cases. Increasing the small cage occupancy leads to an increase in the unit-cell volume and thermal-expansion coefficient. Among simulations with the same small cage occupancy, those with the large cages containing 4H2 guests have the largest volumes. The THF guest molecules have a stabilizing effect on the clathrate and the configurational energy of the unit cell decreases linearly as the THF content increases. For binary THF + H2 clathrates, the substitution of the THF molecules in the large cages with sets of 4H2 molecules increases the configurational energy. For the binary clathrates, various combinations of THF and H2 occupancies have similar configurational energies.     

Orientation of guest benzene molecules in Hofmann-type and related clathrates by molecular mechanics calculation

Molecular mechanics calculations were carried out to interpret the observed orientational angle of the benzene molecule enclathrated in the Hofmann-type M(NH₃)₂Ni(CN)₄·2 C₆H₆ (M = Mn, Ni, Cu, and Cd), Hofmann-en-type Cd(en)Ni(CN)₄·2 C₆H₆ (en = NH₂CH₂CH₂NH₂), and Hofmannmea-type(2) Cd(mea)Ni(CN)₄·2 C₆H₆ (mea = NH₂CH₂CH₂OH) clathrates using the van der Waals potential functions in Molecular Mechanics Version 2. The angle is most influenced by the guest-to-guest contact in the interlayer space between the two-dimensionalcatena-[metal(II) tetra--cyanonickelate(II)] networks for the Hofmann-type series. The discrepancy between the calculated and the observed angles in each crystal structure was at largest 3.5°; the structures of Cd(NH₃)₂Ni(CN)₄·2 C₆H₆ and Cd(en)Ni(CN)₄·2 C₆H₆ have been revised using new data collected by counter-methods.     

Organic Reactions in the Solid State: The reactivity of guest molecules in tri-o-thymotide clathrates

Tri-o-thymotide (TOT) clathrates are enantiomorphous and enantioselective (chiral cages). It was shown that an external molecular reactant can diffuse into the TOT host crystal lattice and reacts with the included molecule (guest) in characteristic ways, differing from those occurring in liquid solutions. Several aspects of the action of hydrogen halides (HCl, HBr) on the chemical behavior of included oxiranes were investigated for solid-gas and solid-liquid (aqueous) systems. Under well established experimental conditions, these reactions gave regiospecifically one target product and were asymmetric. The included substrate underwent first an acid-catalyzed allylic isomerization that is cage-specific and mostly quantitative. In sheer contrast, strong basic conditions were required to promote, in reduced yield, the analogous transformation in solution. The regiospecificity and enantioselectivity of several intra-crystalline conversions allowed the accurate determination of the absolute configuration of several guest molecules. Kinetic measurements were achieved that disclosed some striking features of this new type of heterogeneous reactions. Tentative models for the cage stereoselective mechanisms are briefly discussed.     

Heterogeneous asymmetric ring-opening reactions of prochiral epoxides included as guest molecules in tri-o-thymotide clathrates.

Enantiomorphous tri-o-thymotide clathrates of prochiral oxiranes were submitted to the action of gaseous hydrogen halides. Ring-opening reactions ensued that differ from those reported in homogeneous phase, showing a considerable modification of the chemical reactivity of the external reagent in the host lattice. Chirality transfer from the host receptors to the guest products was also observed, but with a poor efficiency.     

The chiral recognition of guest molecules in trio-o-thymotide clathrates: A semi-empirical approach. Preliminary communication

The enantiomers of a chiral solvent can be enclathrated to a different extent in a crystal lattice consisting of tri-o-thymotide ( 1 ) molecules of a given handedness. This property affords a mean of studying the stereoselective interaction of a chiral environment with an enclosed chiral component. The general approach to account for the observed differences in stereoselectivity is based on the calculation and comparison of the minimum energies for the respective inclusion of enantiomeric guest molecules within a rigid cage of given chirality. An interpretation of the fair chiral recognition of 2-bromobutane as opposed to the unselective inclusion of 2-butanol is attempted.     

Ab initio study of the NMR shielding constants and spin-spin coupling constants in cyclopropene

Summary Ab initio calculations of parameters which characterize the NMR spectrum are presented for the cyclopropene molecule. The London orbitals CHF (or GIAO-CHF, Gauge-Independent Atomic Orbital Coupled Hartree-Fock) results for the shielding constants are in good agreement with the experimental data, accurately determined, and with otherab initio values. The calculations of the NMR spin-spin coupling constants have been performed using the Multiconfiguration Time-Dependent Hartree-Fock (MC TDHF) approach. Different basis sets and MC SCF wavefunctions were used to estimate the accuracy of the results. Good agreement is obtained with the coupling constants estimated using the available experimental data.Dedicated to Professor Werner Kutzelnigg on the occasion of his 60th birthday     

Calculations of the magnetic shielding constants of heavy nuclei in polyatomic molecules

Coupled Hartree-Fock perturbation theory has been applied to compute the nuclear magnetic shielding tensors for ¹⁷O, ¹⁴N, and ¹³C in the molecules of water, ammonia, and methane with four wave functions of increasing accuracy, expanded over basis sets of Gaussian functions. The agreement with the experimental data available for ammonia and methane is very good. Quantities necessary to evaluate the shilding for an arbitrary gauge are also given. The degree of gauge-invariance of the calculated properties is nt satisfactory in the ammonia, while better results are found for water.     

Xanthenol clathrates: structure, thermal stability, guest exchange and kinetics of desolvation

A series of clathrates comprising the xanthenol host, 9-(4-methoxyphenyl)-9H-xanthen-9-ol, with a variety of aromatic guests displays similar structures in the space group P(-1). We have elucidated the structures of the inclusion compounds H x 1/2G, where H is 9-(4-methoxyphenyl)-9H-xanthen-9-ol and G is benzene, o-, m- and p-xylene. The structures are isostructural with respect to the host and display consistent (Host)-OH...O-(Host) hydrogen bonding. The guests lie on a centre of inversion and with the exception of the symmetrical guests, benzene and p-xylene, are disordered. An interesting case arises with m-xylene, which is ordered at low temperature (113 K) with both the host and guest molecules in general positions. At a higher temperature (283 K) the inclusion compound with m-xylene fits the series. We have correlated the structures with their thermal stabilities, guest exchange and kinetics of desolvation.     

Ab initio study of interaction-induced NMR shielding constants in mixed rare gas dimers

The interaction-induced contribution to the NMR shielding constants in homonuclear A2 and heteronuclear AB (A,B=He,Ne,Ar) dimers is obtained ab initio by employing a coupled cluster singles and doubles with perturbative treatment of triples wave function model and extended correlation-consistent basis sets. The second virial coefficients entering the expansion of the property with the density are then computed in a fully quantum mechanical approach, for temperatures ranging from the limit of dissociation of the dimer to well above standard conditions. The results can be used to describe the density and temperature dependence of the shielding constants in binary mixtures of helium, neon, and argon. The predicted effects should be observable for the interaction of 21Ne with other rare gases.     

Self-assembled nanocages for hydrophilic guest molecules

Reverse polymeric micelles are obtained following the association of polymeric amphiphiles in apolar media. To this date, reports of pharmaceutical applications for such micelles have been scarce, mainly because these systems have been studied in solvents that are not suitable for medical use. Here, alkylated star-shaped poly(glycerol methacrylate) polymers have been proposed in the design of oil-soluble reverse polymeric micelles. Micellar behavior was studied in various apolar solvents, including ethyl oleate, a pharmaceutically acceptable vehicle. The polymers were shown to assemble into spherical nanostructures (<40 nm) as determined by cryogenic transmission electron microscopy and atomic force microscopy studies. Interestingly, the reverse micelles were able to encapsulate various peptides/proteins (vasopressin, myoglobin, and albumin) in substantial amounts and facilitate their solubilization in oil. The nature of both the polymer used in micelle formation and the guest molecules was found to influence the ability of the micelle to interact with hydrophilic compounds.     

Effect of perturbation of the atomic basis on nuclear magnetic shielding constants for small molecules

We have calculated the components of the paramagnetic part of the magnetic shielding tensor for nuclei in molecules of LiH, HF, and H₂O within the uncoupled variant of Hartree-Fock-Roothaan perturbation theory, taking into account the dependence of the original basis set of Slater-type AO's (STO's) on the perturbation parameter. We have shown that it is necessary to take into account such a dependence when calculating the components of the magnetic shielding tensor in minimal basis sets of STO's. We have carried out a comparative analysis of the data obtained with results of other approaches.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 24, No. 5, pp. 527–532, September–October, 1988     

Two Mn(II) chloride complexes containing guest molecules

Two phenanthroline-manganese inclusion complexes with [MnCl(H₂O)(phen)₂]⁺ core have been synthesized and characterized by single crystal X-ray diffraction, elemental analyses, IR spectra, thermogravimetric analyses. Uncoordinated 2-mercaptothiazole (tzdtH) and 2-mercaptobenzothiazole (bztzH) as guest molecules are included in the complexes with formulas [MnCl(H₂O)(phen)₂]Cl·tzdtH (1) and {[MnCl(H₂O)(phen)₂]Cl}₂·bztzH (2). X-ray structural analyses for complexes revealed that the complex 1 is triclinic, space group P1 with a=9.724(1) Å, b=11.858(1) Å, c=12.644(2) Å; β=89.056(2)°; Z=2, D _c=1.513 Mg m^?3, F(000)=638 and the complex 2 is triclinic, space group P1 with a=9.861(1) Å, b=11.476(1) Å; c=12.908(3) Å; β=84.991(2)°; Z=1, D _c=1.511 Mg m^?3, F(000)=600. Two complexes exhibit high stability up to 650°C. The molar specific heat capacities for the two complexes 1 and 2 can be estimated as being 96.175±0.332 and 72.505±0.364 J mol^?1 K^?1 at 298.15 K by RD496-III microcalorimeter, respectively.     

NMR shielding constants in PH3, absolute shielding scale, and the nuclear magnetic moment of 31P

Ab initio values of the absolute shielding constants of phosphorus and hydrogen in PH(3) were determined, and their accuracy is discussed. In particular, we analyzed the relativistic corrections to nuclear magnetic resonance (NMR) shielding constants, comparing the constants computed using the four-component Dirac-Hartree-Fock approach, the four-component density functional theory (DFT), and the Breit-Pauli perturbation theory (BPPT) with nonrelativistic Hartree-Fock or DFT reference functions. For the equilibrium geometry, we obtained σ(P) = 624.309 ppm and σ(H) = 29.761 ppm. Resonance frequencies of both nuclei were measured in gas-phase NMR experiments, and the results were extrapolated to zero density to provide the frequency ratio for an isolated PH(3) molecule. This ratio, together with the computed shielding constants, was used to determine a new value of the nuclear magnetic dipole moment of (31)P: μ(P) = 1.1309246(50) μ(N).