Synthesis and Pairing Properties of Oligodeoxynucleotides Containing N7‐(Purin‐2‐amine Deoxynucleosides)

A general synthesis of the four isomeric N⁷‐α‐D ‐, N⁷‐β‐D ‐, N⁹‐α‐D ‐, and N⁹‐β‐D ‐(purin‐2‐amine deoxynucleoside phosphoramidite) building blocks for DNA synthesis is described (Scheme). The syntheses start with methyl 3′,5′‐di‐O‐acetyl‐2′‐deoxy‐D ‐ribofuranoside ( 2 ) as the sugar component and the N²‐acetyl‐protected 6‐chloropurin‐2‐amine 1 as the base precursor. N⁷‐Selectivity was achieved by kinetic control, and N⁹‐selectivity by thermodynamic control of the nucleosidation reaction. The two N⁷‐(purin‐2‐amine deoxynucleosides) were introduced into the center of a decamer DNA duplex, and their pairing preferences were analyzed by UV‐melting curves. Both the N⁷‐α‐D ‐ and N⁷‐β‐D ‐(purin‐2‐amine nucleotide) units preferentially pair with a guanine base within the Watson‐Crick pairing regime, with ΔT_ms of −6.7 and −8.7 K, respectively, relative to a C⋅G base pair (Fig. 3 and Table 1). Molecular modeling suggests that, in the former base pair, the purinamine base is rotated into the syn‐arrangement and is able to form three H‐bonds with O(6), N(1), and NH₂ of guanine, whereas in the latter base pair, both bases are in the anti‐arrangement with two H‐bonds between the N(3) and NH₂ of guanine, and NH₂ and N(1) of the purin‐2‐amine base (Fig. 4).     

A Theoretical Study of 1‐D and 2‐D Helium Lattices

One‐ and two‐dimensional (1‐D and 2‐D) helium lattices have been studied using ab initio RHF/6–31G** computations. Structural, physical and thermochemical properties have been calculated and analyzed for the 1‐D and 2‐D He_N lattices respectively up to N = 50 and N = 36. Asymptotic properties of the 1‐D He_N lattices are obtained by extrapolating N‐dependence properties to large values of N. Analysis of the results show that the bulk per‐atom interaction (binding) energies increase while the optimized interatomic distances (bond lengths) slightly decrease with the increase in size of the 1‐D He_N lattices and both reach their asymptotic values of 0.352 cm^?1 and 3.18775 Å, respectively. Between the square and hexagonal (packed) structures of the 2‐D He_N lattices, the latter is more favored. Extrapolated values of the calculated properties, including lattice parameter, binding and zero point energies, heat capacity, and entropy have also been calculated for both 1‐D and 2‐D He_N lattices. The surface densities for monolayer films of helium atoms with square and hexagonal configurations have been calculated to be respectively 9.84 × 10¹⁸ and 1.04 × 10¹⁹ helium atoms/cm² which are comparable to the experimental value of 2.4 × 10¹⁹ helium atom/m² well within the typical large and directional error bars of the experiments. Surface effects have been investigated by comparing the packed He_N2‐D lattices with the same value of N but with different geometries (arrangements). This comparison showed that the He_N lattices prefer arrangements with the smallest surface area.     

Synthesis of 2′‐O‐[(Triisopropylsilyl)oxy]methyl (= tom)‐Protected Ribonucleoside Phosphoramidites Containing Various Nucleobase Analogues

The first results of a study aiming at an efficient preparation of a large variety of 2′‐O‐[(triisopropylsilyl)oxy]methyl(= tom)‐protected ribonucleoside phosphoramidite building blocks containing modified nucleobases are reported. All of the here presented nucleosides have already been incorporated into RNA sequences by several other groups, employing 2′‐O‐tbdms‐ or 2′‐O‐tom‐protected phosphoramidite building blocks (tbdms = (tert‐butyl)dimethylsilyl). We now optimized existing reactions, developed some new and shorter synthetic strategies, and sometimes introduced other nucleobase‐protecting groups. The 2′‐O‐tom, 5′‐O‐(dimethoxytrityl)‐protected ribonucleosides N²‐acetylisocytidine 5 , O²‐(diphenylcarbamoyl)‐N⁶‐isobutyrylisoguanosine 8 , N⁶‐isobutyryl‐N²‐(methoxyacetyl)purine‐2,6‐diamine ribonucleoside (= N⁸‐isobutyryl‐2‐[(methoxyacetyl)amino]adenosine) 11 , 5‐methyluridine 13 , and 5,6‐dihydrouridine 15 were prepared by first introducing the nucleobase protecting groups and the dimethoxytrityl group, respectively, followed by the 2′‐O‐tom group (Scheme 1). The other presented 2′‐O‐tom, 5′‐O‐(dimethoxytrityl)‐protected ribonucleosides inosine 17 , 1‐methylinosine 18 , N⁶‐isopent‐2‐enyladenosine 21 , N⁶‐methyladenosine 22 , N⁶,N⁶‐dimethyladenosine 23 , 1‐methylguanosine 25 , N²‐methylguanosine 27 , N²,N²‐dimethylguanosine 29 , N⁶‐(chloroacetyl)‐1‐methyladenosine 32 , N⁶‐{{{(1S,2R)‐2‐{[(tert‐butyl)dimethylsilyl]oxy}‐1‐{[2‐(4‐nitrophenyl)ethoxy]carbonyl}propyl}amino}carbonyl}}adenosine 34 (derived from L ‐threonine) and N⁴‐acetyl‐5‐methylcytidine 36 were prepared by nucleobase transformation reactions from standard, already 2′‐O‐tom‐protected ribonucleosides (Schemes 2–4). Finally, all these nucleosides were transformed into the corresponding phosphoramidites 37 – 52 (Scheme 5), which are fully compatible with the assembly and deprotection conditions for standard RNA synthesis based on 2′‐O‐tom‐protected monomeric building blocks.     

6‐Aza‐2′‐deoxy­uridine and N3‐anisoyl‐6‐aza‐2′‐deoxy­uridine

In 2‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐1,2,4‐triazine‐3,5(2H,4H)‐dione (6‐aza‐2′‐deoxy­uridine), C₈H₁₁N₃O₅, (I), the conformation of the glycosylic bond is between anti and high‐anti [χ = −94.0 (3)°], whereas the derivative 2‐(2‐deoxy‐β‐d ‐erythro‐pentofuranosyl)‐N⁴‐(2‐methoxy­benzoyl)‐1,2,4‐triazine‐3,5(2H,4H)‐dione (N³‐anisoyl‐6‐aza‐2′‐deoxy­uridine), C₁₆H₁₇N₃O₇, (II), displays a high‐anti conformation [χ = −86.4 (3)°]. The furanosyl moiety in (I) adopts the S‐type sugar pucker (²T₃), with P = 188.1 (2)° and τ_m = 40.3 (2)°, while the sugar pucker in (II) is N (³T₄), with P = 36.1 (3)° and τ_m = 33.5 (2)°. The crystal structures of (I) and (II) are stabilized by inter­molecular N—H⋯O and O—H⋯O inter­actions.     

Synthesis of Two‐dimensional Microporous Carbonaceous Polymer Nanosheets and Their Application as High‐performance CO2 Capture Sorbent

The synthesis of two‐dimensional (2D) polymer nanosheets with a well‐defined microporous structure remains challenging in materials science. Here, a new kind of 2D microporous carbonaceous polymer nanosheets was synthesized through polymerization of a very low concentration of 1,4‐dicyanobenzene in molten zinc chloride at 400–500 °C. This type of nanosheets has a thickness in the range of 3–20 nm, well‐defined microporosity, a high surface area (～537 m² g^?1), and a large micropore volume (～0.45 cm³ g^?1). The microporous carbonaceous polymer nanosheets exhibit superior CO₂ sorption capability (8.14 wt % at 298 K and 1 bar) and a relatively high CO₂ selectivity toward N₂ (25.6). Starting from different aromatic nitrile monomers, a variety of 2D carbonaceous polymer nanosheets can be obtained showing a certain universality of the ionothermal method reported herein.     

MnTaO2N: Polar LiNbO3‐type Oxynitride with a Helical Spin Order

The synthesis, structure, and magnetic properties of a polar and magnetic oxynitride MnTaO₂N are reported. High‐pressure synthesis at 6 GPa and 1400 °C allows for the stabilization of a high‐density structure containing middle‐to‐late transition metals. Synchrotron X‐ray and neutron diffraction studies revealed that MnTaO₂N adopts the LiNbO₃‐type structure, with a random distribution of O^2? and N^3? anions. MnTaO₂N with an “orbital‐inactive” Mn²⁺ ion (d⁵; S=5/2) exhibits a nontrivial helical spin order at 25 K with a propagation vector of [0,0,δ] (δ≈0.3), which is different from the conventional G‐type order observed in other orbital‐inactive perovskite oxides and LiNbO₃‐type oxides. This result suggests the presence of strong frustration because of the heavily tilted MnO₄N₂ octahedral network combined with the mixed O^2?/N^3? species that results in a distribution of (super)‐superexchange interactions.     

Preparation and Pb (II) adsorption in aqueous of 2D/2D g‐C3N4/MnO2 composite

A novel g‐C₃N₄/MnO₂ composite was prepared by in situ deposition of MnO₂ on graphitic carbon nitride (g‐C₃N₄) nanosheets, and its adsorption properties were evaluated for removal of Pb (II) in aqueous. Fourier transform‐infrared, spectrometer scanning electron microscopy and transmission electron microscopy characterization showed the g‐C₃N₄/MnO₂ composite had a two‐dimensional/two‐dimensional (2D/2D) structure with ample active sites. The Brunauer–Emmett–Teller specific surface area of g‐C₃N₄/MnO₂ composites (234.9 m²/g) was 13.5 times larger than that of g‐C₃N₄ (17.37 m²/g), providing better conditions for adsorption. The adsorption kinetic data were better fitted with the pseudo‐second‐order model. The Langmuir model was more suitable for describing the experimental equilibrium data of g‐C₃N₄/MnO₂, and the maximum adsorption capacity was 204.1 mg/g for Pb (II). The adsorption of g‐C₃N₄/MnO₂ composite for Pb (II) was an endothermic and spontaneous process, and reached adsorption equilibrium rapidly within initial 150 min. This composite was an excellent adsorbent because of its higher adsorption capacity and facile preparation progress.     

N,N,N‐Trimethyl‐5‐[(2,3,5,6‐tetrafluorophenoxy)carbonyl]pyridin‐2‐aminium trifluoromethanesulfonate a precursor for the synthesis of 2,3,5,6‐tetrafluorophenyl 6‐[18F]‐fluoronicotinate

The synthesis, recrystallization, and X‐ray deterimination of N,N,N‐trimethyl‐5‐[(2,3,5,6‐tetrafluorophenoxy)carbonyl]pyridin‐2‐aminium trifluoromethanesulfonate (PyTFP‐precursor), C₁₅H₁₃F₄N₂O₂⁺·CF₃SO₃⁻, is described. This triflate salt precursor is required for the synthesis of 2,3,5,6‐tetrafluorophenyl 6‐[¹⁸F]‐fluoronicotinate ([¹⁸F]FPyTFP), a prosthetic group used to radiolabel peptides for positron emission tomography (PET), as peptides are increasingly being used as PET‐imaging probes in nuclear medicine. Radiolabeling of peptides is typically done using a `prosthetic group', a small synthon to which the radioisotope is attached in the first step, followed by attachment to the peptide in the second step. During the synthesis of the PyTFP‐precursor, displacement of a Cl atom with trimethylamine gas and anion replacement with a triflate counter‐ion is critical, as incomplete replacement would hinder radioisotopic incorporation of nucleophilic fluorine‐18 and result in diminished radiochemical yields. The structural determination of the PyTFP‐precursor by X‐ray crystallography helped confirm the anion exchange of chloride with triflate.     

Synthesis,Base Pairing,and Fluorescence Properties of Oligonucleotides Containing 1H‐Pyrazolo[3,4‐d]pyrimidin‐6‐amine (8‐Aza‐7‐deazapurin‐2‐amine) as an Analogue of Purin‐2‐amine

The synthesis of the N⁹‐ and N⁸‐(β‐D ‐2′‐deoxyribonucleosides) 2 and 10 , respectively, of 8‐aza‐7‐deazapurin‐2‐amine (=1H‐pyrazolo[3,4‐d]pyrimidin‐6‐amine) is described. The fluorescence properties and the stability of the N‐glycosylic bond of 2 were determined and compared with those of the 2′‐deoxyribonucleosides 1 and 3 of purin‐2‐amine and 7‐deazapurin‐2‐amine respectively. From the nucleoside 2 , the phosphoramidite 14 was prepared, and oligonucleotides were synthesized. Duplexes containing compound 1 or 2 are slightly less stable than those containing 2′‐deoxyadenosine, while their CD spectra are rather different. The fluorescence of the nucleosides is strongly quenched (>95%) in single‐stranded as well as in duplex DNA. The residual fluorescence was used to determine the melting profiles, which gave T_m values similar to those determined from the UV melting curves.     

One‐Pot Four‐Component Synthesis of N2‐Alkyl‐N3‐[2‐(1,3,4‐oxadiazol‐2‐yl)aryl]benzofuran‐2,3‐diamines

A simple synthesis of N²‐alkyl‐N³‐[2‐(1,3,4‐oxadiazol‐2‐yl)aryl]benzofuran‐2,3‐diamines 5 via a one‐pot four‐component reaction is described (Scheme 1). A mixture of N‐(isocyanoimino)triphenylphosphorane ( 1 ), a 2‐aminobenzoic acid 2 , a 2‐hydroxybenzaldehyde 3 , and an isocyanide 4 in absolute EtOH at room temperature undergoes a smooth reaction to afford 5 in excellent yields (Table).     

Rare examples of base pairing via a protonated pyridine N atom in two salts of N2,N6‐bis(1,3‐dimethylimidazolin‐2‐ylidene)pyridine‐2,6‐diamine

The title compounds, namely 2,6‐bis[(1,3‐dimethylimidazolin‐2‐ylidene)amino]pyridinium perchlorate, C₁₅H₂₄N₇⁺·ClO₄⁻, (I), and bis{2,6‐bis[(1,3‐dimethylimidazolin‐2‐ylidene)amino]pyridinium} μ‐oxido‐bis[trichloridoiron(III)], (C₁₅H₂₄N₇)₂[Fe₂Cl₆O], (II), are structurally unusual examples of the organization of molecular units via base pairing. The cations in salts (I) and (II) are derived from the bisguanidine N²,N⁶‐bis(1,3‐dimethylimidazolin‐2‐ylidene)pyridine‐2,6‐diamine, which associates in centrosymmetric pairs via two N—H...N hydrogen‐bond interactions. N—H...N bridges are formed between the protonated pyridine N atom and one of the nonprotonated guanidine N atoms, with N...H distances of 2.01 (1)–2.10 (1) Å. Compound (I) contains two crystallographically independent cations and anions per asymmetric unit. One of the perchlorate anions is disordered, while the [Fe₂Cl₆O]²⁻ anion lies on an inversion centre.     

A Novel 1D Coordination Polymer [Pb(phen)(μ‐N3)(μ‐NO3)]n with the First Pb2‐(μ‐N3)2 Unit (phen = 1,10‐phenanthroline)

A novel 1D polymeric lead(II) complex containing the first Pb₂‐(μ‐N₃)₂ motif, [Pb(phen)(μ‐N₃)(μ‐NO₃)]_n (phen = 1,10‐phenanthroline), has been synthesized and characterized. The single‐crystal X‐ray data showed the coordination number of Pb²⁺ ions to be eight (PbN₄O₄) with the Pb²⁺ ions having “stereo‐chemically active” electron lone pairs; the coordination sphere is hemidirected. The chains interact with each other via π‐π interactions to create a 3D framework.     

Growth of High‐Quality,Thickness‐Reduced Zeolite Membranes towards N2/CH4 Separation Using High‐Aspect‐Ratio Seeds

Greatly improved zeolite membranes were prepared by using high‐aspect‐ratio zeolite seeds. Slice‐shaped seeds with a high aspect ratio (AR) facilitated growth of thinner continuous SAPO‐34 membranes of much higher quality. These membranes showed N₂ permeances as high as (2.87±0.15)×10^?7 mol m^?2 s^?1 Pa^?1 at 22 °C while maintaining a decent N₂/CH₄ selectivity (9–11.2 for equimolar mixture). On the basis of these thinner high‐quality SAPO‐34 membranes, fine‐tuning the local crystal structure by incorporating more silicon further increased the N₂ permeance by 1.4 times without sacrificing the N₂/CH₄ selectivity. We expect that application of large AR zeolite seeds might be a viable strategy to grow thin high‐quality zeolite membranes. In addition, fine‐tuning of the crystal structure by changing the crystal composition might be a feasible way for further improving the separating performance of high‐quality zeolite membranes.     

Growth of High‐Quality,Thickness‐Reduced Zeolite Membranes towards N2/CH4 Separation Using High‐Aspect‐Ratio Seeds

Greatly improved zeolite membranes were prepared by using high‐aspect‐ratio zeolite seeds. Slice‐shaped seeds with a high aspect ratio (AR) facilitated growth of thinner continuous SAPO‐34 membranes of much higher quality. These membranes showed N₂ permeances as high as (2.87±0.15)×10⁻⁷ mol m⁻² s⁻¹ Pa⁻¹ at 22 °C while maintaining a decent N₂/CH₄ selectivity (9–11.2 for equimolar mixture). On the basis of these thinner high‐quality SAPO‐34 membranes, fine‐tuning the local crystal structure by incorporating more silicon further increased the N₂ permeance by 1.4 times without sacrificing the N₂/CH₄ selectivity. We expect that application of large AR zeolite seeds might be a viable strategy to grow thin high‐quality zeolite membranes. In addition, fine‐tuning of the crystal structure by changing the crystal composition might be a feasible way for further improving the separating performance of high‐quality zeolite membranes.     

Potassium‐Ion‐Assisted Regeneration of Active Cyano Groups in Carbon Nitride Nanoribbons: Visible‐Light‐Driven Photocatalytic Nitrogen Reduction

As a metal‐free nitrogen reduction reaction (NRR) photocatalyst, g‐C₃N₄ is available from a scalable synthesis at low cost. Importantly, it can be readily functionalized to enhance photocatalytic activities. However, the use of g‐C₃N₄‐based photocatalysts for the NRR has been questioned because of the elusive mechanism and the involvement of N defects. This work reports the synthesis of a g‐C₃N₄ photocatalyst modified with cyano groups and intercalated K⁺ (mCNN), possessing extended visible‐light harvesting capacity and superior photocatalytic NRR activity (NH₃ yield: 3.42 mmol g^?1 h^?1). Experimental and theoretical studies suggest that the ‐C≡N in mCNN can be regenerated through a pathway analogous to Mars van Krevelen process with the aid of the intercalated K⁺. The results confirm that the regeneration of the cyano group not only enhances photocatalytic activity and sustains the catalytic cycle, but also stabilizes the photocatalyst.     

Efficient Access to Peptidyl‐RNA Conjugates for Picomolar Inhibition of Non‐ribosomal FemXWv Aminoacyl Transferase

Peptidyl–RNA conjugates have various applications in studying the ribosome and enzymes participating in tRNA‐dependent pathways such as Fem transferases in peptidoglycan synthesis. Herein a convergent synthesis of peptidyl–RNAs based on Huisgen–Sharpless cycloaddition for the final ligation step is developed. Azides and alkynes are introduced into tRNA and UDP‐MurNAc‐pentapeptide, respectively. Synthesis of 2′‐azido RNA helix starts from 2′‐azido‐2′‐deoxyadenosine that is coupled to deoxycytidine by phosphoramidite chemistry. The resulting dinucleotide is deprotected and ligated to a 22‐nt RNA helix mimicking the acceptor arm of Ala‐tRNA^Ala by T4 RNA ligase. For alkyne UDP‐MurNAc‐pentapeptide, meso‐cystine is enzymatically incorporated into the peptidoglycan precursor and reduced, and L ‐Cys is converted to dehydroalanine with O‐(mesitylenesulfonyl)hydroxylamine. Reaction of but‐3‐yne‐1‐thiol with dehydroalanine affords the alkyne‐containing UDP‐MurNAc‐pentapeptide. The Cu^I‐catalyzed azide alkyne cycloaddition reaction in the presence of tris[(1‐hydroxypropyl‐1H‐1,2,3‐triazol‐4‐yl)methyl]amine provided the peptidyl‐RNA conjugate, which was tested as an inhibitor of non‐ribosomal FemX_Wv aminoacyl transferase. The bi‐substrate analogue was found to inhibit FemX_Wv with an IC₅₀ of (89±9) pM , as both moieties of the peptidyl–RNA conjugate contribute to high‐affinity binding.     

Structural analysis of interpenetrated methyl‐modified MOF‐5 and its gas‐adsorption properties

The first example of an interpenetrated methyl‐modified MOF‐5 with the formula Zn₄O(DMBDC)₃(DMF)₂, where DMBDC^2? is 2,5‐dimethylbenzene‐1,4‐dicarboxylate and DMF is N,N‐dimethylformamide (henceforth denoted as Me₂MOF‐5‐int ), namely, poly[tris(μ₄‐2,5‐dimethylbenzene‐1,4‐dicarboxylato)bis(N,N‐dimethylformamide)‐μ₄‐oxido‐tetrazinc(II)], [Zn₄(C₁₀H₈O₄)₃O(C₃H₇NO)₂]_n, has been obtained from a solvothermal synthesis of 2,5‐dimethylbenzene‐1,4‐dicarboxylic acid and Zn(NO₃)₂·6H₂O in DMF. A systematic study revealed that the choice of solvent is of critical importance for the synthesis of phase‐pure Me₂MOF‐5‐int , which was thoroughly characterized by single‐crystal and powder X‐ray diffraction (PXRD), as well as by gas‐adsorption analyses. The Brunauer–Emmett–Teller surface area of Me₂MOF‐5‐int (660 m² g^?1), determined by N₂ adsorption, is much lower than that of nonpenetrated Me₂MOF‐5 (2420 m² g^?1). However, Me₂MOF‐5‐int displays an H₂ uptake capacity of 1.26 wt% at 77 K and 1.0 bar, which is comparable to that of non‐interpenetrated Me₂MOF‐5 (1.51 wt%).     

The 5‐Methylisocytosine β‐D‐Ribopyranosyl (4′ → 2′)‐Oligonucleotide

In the context of Eschenmoser's work on pyranosyl‐RNA (‘p‐RNA’), we investigated the synthesis and base‐pairing properties of the 5‐methylisocytidine derivative. The previously determined clear‐cut restrictions of base‐pairing modes of p‐RNA had led to the expectation that a 5‐methylisocytosine β‐D ‐ribopyranosyl (= D ‐pr(^MeisoC)) based (4′ → 2′)‐oligonucleotide would pair inter alia with D ‐pr(isoG) and L ‐pr(G) based oligonucleotides (D ‐pr and L ‐pr = pyranose form of D ‐ and L ‐ribose, resp.). Remarkably, we could not observe pairing with the D ‐pr(isoG) oligonucleotide but only with the L ‐pr(G) oligonucleotide. Our interpretation concludes that this – at first hand surprising – observation is caused by a change in the nucleosidic torsion angle specific for isoC.     

Electrocatalysis of N2 to NH3 by HKUST‐1 with High NH3 Yield

Electrolytic ammonia synthesis from nitrogen at ambient conditions is appearing as a promising alternative to the Haber‐Bosch process which is consuming high energy and emitting CO₂. Here, a typical MOF material, HKUST‐1 (Cu?BTC, BTC=benzene‐1,3,5‐tricarboxylate), was selected as an electrocatalyst for the reaction of converting N₂ to NH₃ under ambient conditions. At ?0.75 V vs. reversible hydrogen electrode, it achieves excellent catalytic performance in the electrochemical synthesis of ammonia with high NH₃ yield (46.63 μg h^?1 mg^?1 _cat. or 4.66 μg h^?1 cm^?2) and good Faraday efficiency (2.45%). It is indicated that the good performance of the HKUST‐1 catalyst may originate from the formation of Cu(I). In addition, the catalyst also has good selectivity for N₂ to NH₃.