Dependence of Photochemical Reactivity of the All-trans Retinal Protonated Schiff Base on the Solvent and the Excitation Wavelength

An all-optical experimental technique aimed at measuring photoisomerization quantum yield (ϕ) of the all-trans protonated Schiff base of retinal in solution has been implemented. Upon the increase in the excitation wavelength from 400 to 540 nm a slight increase in ϕ from 0.16 ± 0.03 to 0.20 ± 0.02 is observed in the chromophore dissolved in methanol, whereas the ϕ value of the one dissolved in acetonitrile varies only from 0.22 ± 0.03 (400 nm) to 0.23 ± 0.04 (540 nm). The results suggest that dissipation of the excited-state vibrational energy excess, along with environment-induced modifications of the potential energy surfaces are necessary for an efficient retinal photoisomerization in both solvent and protein environment.     

Photoisomerization and Emission Properties of trans‐ and cis‐Poly(dimethylsilylenephenylenevinylene)s

The photoirradiation of trans‐ and cis‐poly(dimethylsilylenephenylenevinylene)s gave cis‐rich mixtures at equilibrium states. The degree of the photoisomerization could be exactly evaluated by comparing the UV spectra of the photoirradiated solutions with those of the trans and cis polymers. The geometric configuration of the trans and cis polymers was thermally stable and hardly changed even though they were heated. The trans and cis polymers exhibited different emission properties; e.g., trans polymer: λ_max = 400 nm, quantum yield = 3.4×10^–3; cis polymer: λ_max = 380 nm, quantum yield = 1.5×10^–3.     

Photochemistry of visual pigment chromophore models by ab initio molecular dynamics

Ab initio excited-state molecular dynamics calculations have been performed to study the effect of methyl substitution and chromophore distortion on the photoreaction of different four-double-bond retinal model chromophores. Randomly distributed starting geometries were generated by zero-point energy sampling; after Franck-Condon excitation the reaction was followed on the S1 surface. For determining the photoproduct and its configuration, a simplified approach--torsion angle following--is discussed and applied. We find that chromophore distortion significantly affects the outcome of the photoreaction: with dihedral angles taken from the rhodopsin-embedded 11-cis-retinal chromophore, the reaction rate of the model chromophore is increased by a factor of 3 compared to that of the relaxed chromophore. Also, the reaction proceeds in a completely stereoselective manner involving only the cis double bond and with a minimum quantum yield of 72%. Bond torsion is more effective than methyl substitution for fast and selective photochemistry, which is in agreement with photophysical measurements on rhodopsin analogues. We conclude that apart from the geometric distortions caused by the protein pocket it is not necessary to postulate other specific interactions between the protein and the chromophore to effect the selective and ultrafast photoreaction in rhodopsin.     

How Does the Trans–Cis Photoisomerization of Azobenzene Take Place in Organic Solvents?

The trans–cis photoisomerization of azobenzene‐containing materials is key to a number of photomechanical applications, but the actual conversion mechanism in condensed phases is still largely unknown. Herein, we study the ${{\rm{n}}{\rm{,{\rm \pi} ^\ast }}}$ isomerization in a vacuum and in various solvents via a modified molecular dynamics simulation adopting an ab initio torsion–inversion force field in the ground and excited states, while allowing for electronic transitions and a stochastic decay to the fundamental state. We determine the trans–cis photoisomerization quantum yield and decay times in various solvents (n‐hexane, anisole, toluene, ethanol, and ethylene glycol), and obtain results comparable with experimental ones where available. A profound difference between the isomerization mechanism in vacuum and in solution is found, with the often neglected mixed torsional–inversion pathway being the most important in solvents.     

Excited‐State Intramolecular Proton Transfer in a Blue Fluorescence Chromophore Induces Dual Emission

Compared with green fluorescence protein (GFP) chromophores, the recently synthesized blue fluorescence protein (BFP) chromophore variant presents intriguing photochemical properties, for example, dual fluorescence emission, enhanced fluorescence quantum yield, and ultra‐slow excited‐state intramolecular proton transfer (ESIPT; J. Phys. Chem. Lett., 2014 , 5, 92); however, its photochemical mechanism is still elusive. Herein we have employed the CASSCF and CASPT2 methods to study the mechanistic photochemistry of a truncated BFP chromophore variant in the S₀ and S₁ states. Based on the optimized minima, conical intersections, and minimum‐energy paths (ESIPT, photoisomerization, and deactivation), we have found that the system has two competitive S₁ relaxation pathways from the Franck–Condon point of the BFP chromophore variant. One is the ESIPT path to generate an S₁ tautomer that exhibits a large Stokes shift in experiments. The generated S₁ tautomer can further evolve toward the nearby S₁/S₀ conical intersection and then jumps down to the S₀ state. The other is the photoisomerization path along the rotation of the central double bond. Along this path, the S₁ system runs into an S₁/S₀ conical intersection region and eventually hops to the S₀ state. The two energetically allowed S₁ excited‐state deactivation pathways are responsible for the in‐part loss of fluorescence quantum yield. The considerable S₁ ESIPT barrier and the sizable barriers that separate the S₁ tautomers from the S₁/S₀ conical intersections make these two tautomers establish a kinetic equilibrium in the S₁ state, which thus results in dual fluorescence emission.     

Steric Hindrance between Chromophore Substituents as the Driving Force of Rhodopsin Photoisomerization: 10-Methyl-13-Demethyl Retinal Containing Rhodopsin

Abstract— A visual chromophore analogue, 10-methyl-13-demethyl (dm) retinal, was synthesized and reconstituted with bleached bovine rhodopsin to form a visual pigment derivative with absorbance maximum at 505 nm. The investigations with this new compound were stimulated from recent results using 13-dm retinal as a chromophore that revealed a remarkable loss in quantum efficiency (φ of 13-dm retinal-containing rhodopsin: 0.30, Ternieden and Gartner, J. Photochem. Photobiol. B Biol. 33, 83–86, 1996). The quantum efficiency of the new pigment was determined as 0.59 by quantitative bleaching using reconstituted rhodopsin as a reference. The very similar quantum efficiencies of rhodopsin and the new pigment give experimental support for the recently presented hypothesis that a steric hindrance between the substituents at positions 10 and 13 in 11- cis -retinal is elevated during the photoisomerization and thus facilitates the rapid photoisomerization of the visual chromophore (Peteanu et al., Proc. Natl. Acad. Sci. USA 90, 11762–11766, 1993). Such steric hindrance is removed from the molecule by the elimination of the methyl group from position 13 and can be re-established via a rearrangement of the substitution pattern by introducing a methyl group at position 10 of 13-dm retinal.     

Time‐Resolved Energetics of Photoprocesses in Prokaryotic Phytochrome‐Related Photoreceptors

Time‐resolved photoacoustics (PA) is uniquely able to explore the energy landscape of photoactive proteins and concomitantly detects light‐induced volumetric changes (ΔV) accompanying the formation and decay of transient species in a time window between ca. 20 ns and 5 μs. Here, we report PA measurements on diverse photochromic bilin‐binding photoreceptors of prokaryotic origin: (1) the chromophore‐binding GAF3 domain of the red (R)/green (G) switching cyanobacteriochrome 1393 (Slr1393g3) from Synechocystis; (2) the red/far red (R/FR) Synechocystis Cph1 phytochrome; (3) full‐length and truncated constructs of Xanthomonas campestris bacteriophytochrome (XccBphP), absorbing up to the NIR spectral region. In almost all cases, photoisomerization results in a large fraction of energy dissipated as heat (up to 90%) on the sub‐ns scale, reflecting the low photoisomerization quantum yield (<0.2). This “prompt” step is accompanied by a positive ΔV₁ = 5–12.5 mL mol^?1. Formation of the first intermediate is the sole process accessible to PA, with the notable exception of Slr1393g3‐G for which ΔV₁ = +4.5 mL mol^?1 is followed by a time‐resolved, energy‐conserving contraction ΔV₂ = ?11.4 mL mol^?1, τ₂ = 180 ns at 2.4°C. This peculiarity is possibly due to a larger solvent occupancy of the chromophore cavity for Slr1393g3‐G.     

Steric Effects Govern the Photoactivation of Phytochromes

Phytochromes constitute a superfamily of photoreceptor proteins existing in two forms that absorb red (Pr) and far‐red (Pfr) light. Although it is well‐known that the conversion of Pr into Pfr (the biologically active form) is triggered by a Z→E photoisomerization of the linear tetrapyrrole chromophore, direct evidence is scarce as to why this reaction always occurs at the methine bridge between pyrrole rings C and D. Here, we present hybrid quantum mechanics/molecular mechanics calculations based on a high‐resolution Pr crystal structure of Deinococcus radiodurans bacteriophytochrome to investigate the competition between all possible photoisomerizations at the three different (AB, BC and CD) methine bridges. The results demonstrate that steric interactions with the protein are a key discriminator between the different reaction channels. In particular, it is found that such interactions render photoisomerizations at the AB and BC bridges much less probable than photoisomerization at the CD bridge.     

Photoisomerization of trans‐2‐[4′‐(Dimethylamino)styryl]benzothiazole

Photoreaction of trans‐2‐[4′‐(dimethylamino)styryl]benzothiazole (t‐DMASBT) under direct irradiation has been investigated in dioxane, chloroform, methanol and glycerol to understand the mechanism of photoisomerization. Contrary to an earlier report, isomerization takes place in all these solvents including glycerol. The results show that restriction on photoisomerization leads to the increase in fluorescence quantum yield in glycerol. The results are consistent with the theoretically simulated potential energy surface reported earlier using time‐dependent density functional theory (TDDFT) calculations. DFT calculations on cis isomers under isolated condition have suggested that cis‐B conformer is more stable than cis‐A conformer due to hydrogen‐bonding interaction. In the ground state, cis‐DMASBT is predominantly present as cis‐B. The fluorescence spectra of the irradiated t‐DMASBT suggested that photoisomerization follows not the adiabatic path as proposed by Saha et al., but the nonadiabatic path.     

Synthesis and Photoisomerization of Substituted Dibenzofulvene Molecular Rotors

The synthesis, spectral and structural characterization, and photoisomerization of a family of 2‐substituted dibenzofulvene molecular actuators based on (2,2,2‐triphenylethylidene)fluorene (TEF) are reported. The 2‐substituted species investigated are nitro (NTEF), cyano (CTEF), and iodo (ITEF). X‐ray structures of these three compounds and three intermediates were determined to assign alkene configuration and investigate the effects of the 2‐substituents on steric gearing. The addition–elimination reaction of Z‐ 9 with trityl anion to form Z‐ 10 proceeded with complete retention of configuration. Rates of photoisomerization were measured at irradiation wavelengths between 266–355 nm in acetonitrile/dioxane solutions at room temperature. Photoisomerization quantum yields (φ) were calculated by means of a mathematical model that accounts for a certain degree of photodecomposition in the cases of CTEF and ITEF. Quantum yields vary significantly with substituent, having maximum values of φ=0.26 for NTEF, 0.39 for CTEF, and 0.50 for ITEF. NTEF is photochemically robust and has a large quantum yield for photoisomerization in the near‐UV, making it a particularly promising drive rotor moiety for light‐powered molecular devices.     

Tuning the Protein‐Induced Absorption Shifts of Retinal in Engineered Rhodopsin Mimics

Rational design of light‐capturing properties requires understanding the molecular and electronic structure of chromophores in their native chemical or biological environment. We employ here large‐scale quantum chemical calculations to study the light‐capturing properties of retinal in recently designed human cellular retinol binding protein II (hCRBPII) variants (Wang et al. Science, 2012 , 338, 1340–1343). Our calculations show that these proteins absorb across a large part of the visible spectrum by combined polarization and electrostatic effects. These effects stabilize the ground or excited state energy levels of the retinal by perturbing the Schiff‐base or β‐ionone moieties of the chromophore, which in turn modulates the amount of charge transfer within the molecule. Based on the predicted tuning principles, we design putative in silico mutations that further shift the absorption properties of retinal in hCRBPII towards the ultraviolet and infrared regions of the spectrum.     

Photochemistry and Photophysics of the 3‐Styrylidenebenz[e]indanes

The photochemical and photophysical properties of the extended conformers of trans ‐ and cis ‐1‐(2‐naphthyl)‐2‐phenylethenes (t ‐ and c‐ NPE_B ) are strikingly different than those of their rigid analogues, trans ‐ and cis‐ 3‐styrylidenebenz[e]indane (t ‐ and c‐ BPE ). The fluorescence quantum yield and lifetime at 25°C in methylcyclohexane drop from 0.76 and 22.2 ns in t ‐NPE_B to 0.0051 and 0.25 ns in t‐ BPE , and there are complementary changes in the photoisomerization quantum yields. In both cases, photoisomerization occurs in S₂, a stilbenic excited state. The differences in behavior are traced to the diminished S₁/S₂ energy gap on the alkyl substitution afforded by the five‐membered ring in BPE . The effect of viscosity on the torsional relaxation of t ‐BPE , evaluated in glycerol/methanol mixtures at 25°C and in 95/5 and 99.9/0.1 glycerol/methanol (% v/v) as a function of T , is well accounted for by the medium‐enhanced barrier model. Absorption and fluorescence spectra of t ‐BPE in pure glycerol reveal aggregate formation. Quenching of t ‐BPE fluorescence in methylcyclohexane by tri‐n ‐butylamine (TBA ) leads to exciplex fluorescence. Comparison with analogous results for t ‐NPE_B suggests that charge transfer involves primarily the naphthalenic S₁ state in t ‐NPE_B and the stilbenic S₂ state in t ‐BPE .     

Tuning the Photoisomerization of a N^C‐Chelate Organoboron Compound with a Metal?Acetylide Unit

To examine the impact of metal moieties that have different triplet energies on the photoisomerization of B(ppy)Mes₂ compounds (ppy=2‐phenyl pyridine, Mes=mesityl), three metal‐functionalized B(ppy)Mes₂ compounds, Re‐B , Au‐B , and Pt‐B , have been synthesized and fully characterized. The metal moieties in these three compounds are Re(CO)₃(tert‐Bu₂bpy)(C?C), Au(PPh₃)(C?C), and trans‐Pt(PPh₃)₂(C?C)₂, respectively, which are connected to the ppy chelate through the alkyne linker. Our investigation has established that the Re^I unit completely quenches the photoisomerization of the boron unit because of a low‐lying intraligand charge transfer/MLCT triplet state. The Au^I unit, albeit with a triplet energy that is much higher than that of B(ppy)Mes₂, upon conjugation with the ppy chelate unit, substantially increases the contribution of the π→π* transition, localized on the conjugated chelate backbone in the lowest triplet state, thereby leading to a decrease in the photoisomerization quantum efficiency (QE) of the boron chromophore when excited at 365 nm. At higher excitation energies, the photoisomerization QE of Au‐B is comparable to that of the silyl–alkyne‐functionalized B(ppy)Mes₂ ( TIPS‐B ), which was attributable to a triplet‐state‐sensitization effect by the Au^I unit. The Pt^II unit links two B(ppy)Mes₂ together in Pt‐B , thereby extending the π‐conjugation through both chelate backbones and leading to a very low QE of the photoisomerization. In addition, only one boron unit in Pt‐B undergoes photoisomerization. The isomerization of the second boron unit is quenched by an intramolecular energy transfer of the excitation energy to the low‐energy absorption band of the isomerized boron unit. TD‐DFT computations and spectroscopic studies of the three metal‐containing boron compounds confirm that the photoisomerization of the B(ppy)Mes₂ chromophore proceeds through a triplet photoactive state and that metal units with suitable triplet energies can be used to tune this system.     

Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore

Isomerizations of the retinal chromophore were investigated using the IMS‐IMS technique. Four different structural features of the chromophore were observed, isolated, excited collisionally, and the resulting isomer and fragment distributions were measured. By establishing the threshold activation voltages for isomerization for each of the reaction pathways, and by measuring the threshold activation voltage for fragmentation, the relative energies of the isomers as well as the energy barriers for isomerization were determined. The energy barrier for a single cis–trans isomerization is (0.64±0.05) eV, which is significantly lower than that observed for the reaction within opsin proteins.     

Complete-active-space self-consistent-field/Amber parameterization of the Lys296–retinal–Glu113 rhodopsin chromophore-counterion system

A special hybrid quantum mechanics/molecular mechanics forcefield is defined, parameterized and validated for studying the photoisomerization path of the retinal chromophore in the rhodopsin protein. It couples a multireference ab initio Hamiltonian (CASSCF and second-order multireference many-body perturbation theory using a CASSCF reference) to describe the chromophore while the rest of the protein is approximated with the Amber forcefield. The frontier has been carefully parameterized in order to reproduce full quantum mechanics torsional energy profiles, for both the ground state and the first excited state. It is also shown that replacing the chromophore counterion with point charges is a valid approximation. This result is interpreted in terms of a cancellation effect for which a possible explanation is given.     

CIS-TRANS PHOTOISOMERIZATION OF ABSCISIC ACID

Abstract— An important regulator of numerous physiological processes in higher plants is abscisic acid (ABA), which is photoisomerized from the more biologically active cis isomer to the nearly inactive trans isomer by natural sunlight. It is possible that this photoisomerization is a UV control mechanism in functions regulated by ABA.
The quantum yields of both the cis to trans and trans to cis photoisomerizations were measured by an initial velocities method under various conditions of pH and oxygen concentration at room temperature. The yield for photoisomerization of cis-ABA ranged from 0.25 at pH 3.0 to 0.11 at pH 7.0. Oxygen partially quenched the process. The quantum yield varies only slightly with wavelength.
The quantum yield of photolysis of cis-ABA is reported for pH 3.0 as 0.06. This yield also varies slightly with wavelength and is relatively insensitive to oxygen. This relatively high yield explains the loss of potency of ABA during UV irradiation.
Phosphorescence of cis - and trans-ABA is observed in methanol at 77 K. Onset of the emission is at 350 nm. The emission spectra is the same for both isomers.
From these results a mechanism of UV action on plants based on the photoisomerization of the inactive trans-ABA to the biologically active cis isomer is proposed.     

RPE65 and the Accumulation of Retinyl Esters in Mouse Retinal Pigment Epithelium

The RPE65 protein of the retinal pigment epithelium (RPE) enables the conversion of retinyl esters to the visual pigment chromophore 11‐cis retinal. Fresh 11‐cis retinal is generated from retinyl esters following photoisomerization of the visual pigment chromophore to all‐trans during light detection. Large amounts of esters accumulate in Rpe65^?/? mice, indicating their continuous formation when 11‐cis retinal generation is blocked. We hypothesized that absence of light, by limiting the conversion of esters to 11‐cis retinal, would also result in the build‐up of retinyl esters in the RPE of wild‐type mice. We used HPLC to quantify ester levels in organic extracts of the RPE from wild‐type and Rpe65^?/? mice. Retinyl ester levels in Sv/129 wild‐type mice that were dark adapted for various intervals over a 4‐week period were similar to those in mice raised in cyclic light. In C57BL/6 mice however, which contain less Rpe65 protein, dark adaptation was accompanied by an increase in ester levels compared to cyclic light controls. Retinyl ester levels were much higher in Rpe65^?/? mice compared to wild type and kept increasing with age. The results suggest that the RPE65 role in retinyl ester homeostasis extends beyond enabling the formation of 11‐cis retinal.     

The photoisomerization of retinal

Abstract— –Quantum efficiencies have been measured for the photoisomerization of four stereoisomers of retinal (all-trans, 13-cis, 11 cis, and 9-cis) in two solvents at different wavelengths of irradiation and at various temperatures. In heane at 25°C the quantum efficiencies for isomerization at 365 nm are: 9-cis to trans, 0.5; 13-cis to trans, 0.4; 11-cis to trans, 0.2; all-trans to monocis isomers, 0.2-0.06, depending upon assumptions made regarding the stereo-isomeric composition of the product. These values vary somewhat with the wavelength of the irradiating light. The quantum efficiency for the photoisomerization of all-trans retinal in hexane decreases by a factor of 30 when the temperature is lowered from 25° to – 65°C; the activation energy for this photoisomerization is about 5 kcal/mole. The quantum efficiencies for the isomerization of the monocis isomers to all-trans retinal in hexane are virtually independent of temperature. In ethanol the rates of photoisomerization from trans to cis or cis to trans depend only slightly on the temperature between 25° and – 65°C. The photosensitivities of the stereoisomers of retinal are of the same order of magnitude as those of the retinylidene chromophores of rhodopsin (11 -cis), metarhodopsin I (all-trans), and isorhodopsin (9-cis); but it is not yet possible to derive the photochemistry of rhodopsin uniquely and quantitatively from that of retinal.     

Substituent-controlled photoisomerization in retinal chromophore models: Fluorinated and methoxy-substituted protonated Schiff bases

The effect of substitution on the intrinsic (i.e. in vacuo) photoisomerization ability of retinal chromophore models has been explored using CASPT2//CASSCF minimum energy path computations to map the S₁ photoisomerization paths of two substituted minimal models of the retinal chromophore: the 2-cis-penta-2,4-dieniminium and the all-trans-epta-2,4,6-trieniminium cations, which have been modified using fluorine or methoxyl substituents as representative examples of electron-withdrawing and electron-releasing groups, respectively. A systematic analysis has been performed involving substitutions in all the possible positions along the chain. It is shown that the photochemical reactivity and photoisomerization efficiency of these systems may be tuned or indeed changed, although this effect strongly depends on the position of the substituent. In particular, we have shown that (i) most of the systems preserves qualitatively the reactivity of the parent (i.e. unsubstituted) compound; (ii) substitution at positions C4 or C6 leads to a different relaxed excited state structure of the chromophore and in general to a very flat photoisomerization path (or to a tiny S₁ energy barrier in some cases); (iii) the nature of the TICT state (i.e. the S₁ → S₀ decay funnel) may be turned from a conical intersection into an excited state minimum; (iv) for the C4 methoxy-substituted system the isomerization path as well as the S₁/S₀ decay funnel involve an unusual torsional angle. Thus, substitution turns out to be a good tool not only to tune the optical properties (i.e. the absorption and emission features) of the chromophore (as we have already shown in a previous work: I. Conti, F. Bernardi, G. Orlandi, M. Garavelli, Mol. Phys. 104 (2006) 915–924), but it may also play a crucial role in tuning and controlling photoisomerization selectivity and efficiency, affecting excited state lifetime and reaction rate. A rationale for these effects is presented, which provides a basis for understanding reactivity properties and the intrinsic photochemical behavior of substituted retinal chromophores.     

Synthesis of methyl‐substituted azobenzene–carbazole conjugated copolymers with photoinduced structural changes

Azobenzene switches its structure instantaneously by reversible trans‐to‐cis and cis‐to‐trans photoisomerization with light irradiations. Dynamic change in polymer structure is expected via introducing an azobenzene unit into the main chain. In this study, a set of methyl‐substituted azobenzene–carbazole conjugated copolymers is synthesized by the Suzuki–Miyaura coupling method. Introduction of methyl substituents to the azobenzene unit of the monomer, and polymerization in a high‐boiling solvent improve the molecular weight of the polymer. Decrease of effective conjugation length due to the twisted structure of the main chain allows progress of photoisomerization. The microstructure of the polymer was determined with grazing incidence X‐ray diffraction (GIXD) measurements using synchrotron radiation. © 2019 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2019, 57, 1756–1764