Exploiting the Hydrogen Bond Donor/Acceptor Properties of PN‐Heterocycles: Selective Anion Receptors for Hydrogen Sulfate

We describe two novel hybrid receptors combining a phosphorus‐/nitrogen‐containing (PN) phosphonamidate heterocycle with urea recognition units in an arylethynyl backbone. Structural, spectroscopic and computational studies reveal that the origin of superior binding for hydrogen sulfate (HSO₄^?) anion is correlated with the formation of strong hetero‐complementary hydrogen bonds with the phosphonamidate motif. We further demonstrate that the hybrid host system is capable of capturing/transporting the HSO₄^? anion from an aqueous, biphasic system.     

Vinylene‐Linked Covalent Organic Frameworks by Base‐Catalyzed Aldol Condensation

Two 2D covalent organic frameworks (COFs) linked by vinylene (?CH=CH?) groups (V‐COF‐1 and V‐COF‐2) are synthesized by exploiting the electron deficient nature of the aromatic s‐triazine unit of C₃‐symmetric 2,4,6‐trimethyl‐s‐triazine (TMT). The acidic terminal methyl hydrogens of TMT can easily be abstracted by a base, resulting in a stabilized carbanion, which further undergoes aldol condensation with multitopic aryl aldehydes to be reticulated into extended crystalline frameworks (V‐COFs). Both V‐COF‐1 (with terepthalaldehyde (TA)) and V‐COF‐2 (with 1,3,5‐tris(p‐formylphenyl)benzene (TFPB)) are polycrystalline and exhibit permanent porosity and BET surface areas of 1341 m² g^?1 and 627 m² g^?1, respectively. Owing to the close proximity (3.52 Å) of the pre‐organized vinylene linkages within adjacent 2D layers stacked in eclipsed fashion, [2+2] photo‐cycloadditon in V‐COF‐1 formed covalent crosslinks between the COF layers.     

Construction of Hetero‐Four‐Layered Tripalladium(II) Cyclophanes by Transannular π⋅⋅⋅π Interactions

A synthetic strategy for the generation of new molecular species utilizing a provision of nature is presented. Nano‐dimensional (23(2)×21(1)×16(1) ų) hetero‐four‐layered trimetallacyclophanes were constructed by proof‐of‐concept experiments that utilize a suitable combination of π???π interactions between the central aromatic rings, tailor‐made short/long spacer tridentate donors, and the combined helicity. The behavior of the unprecedented four‐layered metallacyclophane system offers a landmark in the development of new molecular systems.     

Effect of Intermolecular Interactions on Metal‐to‐Metal Charge Transfer: A Combined Experimental and Theoretical Investigation

Understanding the effects of intermolecular interactions on metal‐to‐metal charge transfer (MMCT) is crucial to develop molecular devices by grafting MMCT‐based molecular arrays. Herein, we report a series of solvent‐free {Fe₂Co₂} compounds sharing the same cationic tetranuclear {[Fe(PzTp)(CN)₃]₂[Co(dpq)₂]₂}²⁺ (PzTp^?=tetrakis(pyrazolyl)borate, dpq=dipyrido[3,2‐d:2′,3′‐f]quinoxaline) square units but having anions with different size, including BF₄^?, PF₆^?, OTf^?, and [Fe(PzTp)(CN)₃]^?. Intermolecular π???π interactions between dpq ligands, which coordinate to cobalt ions in the {[Fe(PzTp)(CN)₃]₂[Co(dpq)₂]₂}²⁺ units, can be modulated by introducing different counterions, regulating the distortion of the CoN₆ octahedron and ligand field around the cobalt ions. This change results in different MMCT behavior. Computational analyzes reveal the substantial role of the intermolecular interactions tuned by the presence of different counteranions on the MMCT behavior.     

Jumping Crystal of a Hydrogen‐Bonded Organic Framework Induced by the Collective Molecular Motion of a Twisted π System

There is a limited number of reports on mechanically responsive molecular crystals, including thermo‐responsive and light‐responsive crystals. Rigid ordered molecular crystals with a close‐packing structure are less able to accept distortion, which hampers the development of such molecular crystals. The thermosalient effect, or “crystal jumping”, refers to a thermo‐responsive system that converts heat into mechanical force by thermally induced phase transition. While they have recently attracted attention as potential highly efficient molecular actuators, less than two dozens of thermosalient molecular crystals have been reported to date, and the design of such molecules as well as how they assemble to express a thermosalient effect are unknown. Herein, we demonstrate how the cooperative molecular motion of twisted π units could serve to develop a thermo‐responsive jumping molecular crystal with a hydrogen‐bonded organic framework (HOF) of tetra[2,3]thienylene tetracarboxylic acid ( 1 ). The cooperative change in the molecular structure triggered by the desolvation of THF in the channel of the HOF structure induced not only a change in the structure of HOF but also mechanical force. Hydrogen bonding interactions contributed significant thermal stability to maintain the HOF assembly even with a dynamic structural change.     

Highly accurate benchmark calculations of the interaction energies in the complexes C6H6···C6X6 (X = F,Cl, Br,and I)

Different from the case of the benzene dimer, the differences between the interaction energies are always less than 0.50 kcal/mol for face‐to‐face eclipsed, face‐to‐face staggered, and parallel‐displaced configurations of all investigated complexes C₆H₆···C₆X₆ (X = F, Cl, Br, and I). Hence, it is a great challenge for quantum chemists to accurately calculate the interaction energies for the three configurations of the complexes C₆H₆···C₆X₆. This work demonstrates that results obtained with the PBE0 density functional combined with the D3 dispersion correction (PBE0‐D3) and the basis set def2‐TZVPP are in excellent agreement with the estimates of the coupled‐cluster singles, doubles, and perturbative triples [CCSD(T)] complete basis set (CBS) limit. The other finding in this study is that, in comparison with the gold‐standard CCSD(T)/CBS benchmark, the spin‐component scaled (SCS) zeroth‐order symmetry‐adapted perturbation theory (SAPT0), when paired with the basis set aug‐cc‐pVDZ, performs also very well, and its performance is even better than that of the PBE0‐D3/def2‐TZVPP method or the conventional SAPT/aug‐cc‐pVQZ method. The findings of this study are very significant because both PBE0‐D3/def2‐TZVPP and SCS‐SAPT0/aug‐cc‐pVDZ can deal with the systems with more than 200 atoms.     

Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii

Current interest in lone‐pair???π (lp???π) interactions is gaining momentum in biochemistry and (supramolecular) chemistry. However, the physicochemical origin of the exceptionally short (ca. 2.8 Å) oxygen‐to‐nucleobase plane distances observed in prototypical Z‐DNA CpG steps remains unclear. High‐level quantum mechanical calculations, including SAPT2+3 interaction energy decompositions, demonstrate that lp???π contacts do not result from n→π* orbital overlaps but from weak dispersion and electrostatic interactions combined with stereochemical effects imposed by the locally strained structural context. They also suggest that the carbon van der Waals (vdW) radii, originally derived for sp³ carbons, should not be used for smaller sp² carbons attached to electron‐withdrawing groups. Using a more adapted carbon vdW radius results in these lp???π contacts being no longer of the sub‐vdW type. These findings challenge the whole lp???π concept that refers to elusive orbital interactions that fail to explain short interatomic contact distances.     

Interplay between Metal⋅⋅⋅π Interactions and Hydrogen Bonds: Some Unusual Synergetic Effects of Coinage Metals and Substituents

The ternary systems of C₂H₄ (C₂H₂ or C₆H₆)‐MCN‐HF (M=Cu, Ag, Au) and the respective binary systems were investigated to study the interplay between metal???π interactions and hydrogen bonds. The metal???π interactions in C₂H₄‐MCN become stronger with the irregular order Ag<Cu<Au, while the hydrogen bonds in MCN‐HF become weaker following the same order. The metal???π interactions are weakened as the H atoms in the π system are replaced with electron‐withdrawing groups and enhanced by electron‐donating groups. Type 1 of these ternary systems, in which MCN acts as Lewis base and acid simultaneously, is more stable than type 2, in which C₂H₄ acts as a double Lewis base. Negative cooperativity is present in type 2 ternary systems with a weakening of the metal???π interactions and the hydrogen bonds. Positive cooperativity is found in type 1 ternary systems with an enhancement of the metal???π interactions and the hydrogen bonds, except for C₂(CN)₄‐AuCN‐HF‐1. The weaker metal???π interaction in C₆H₆‐AuCN has a greater enhancing effect on the hydrogen bond in AuCN‐HF than those in C₂H₄‐AuCN and C₂H₂‐AuCN. These synergetic effects were analyzed with the natural bond orbital and energy decomposition.     

An Ultra‐Robust and Crystalline Redeemable Hydrogen‐Bonded Organic Framework for Synergistic Chemo‐Photodynamic Therapy

The low structural stability of hydrogen‐bonded organic frameworks (HOFs) is a thorny issue retarding the development of HOFs. A rational design approach is now proposed for construction of a stable HOF. The resultant HOF (PFC‐1) exhibits high surface area of 2122 m² g⁻¹ and excellent chemical stability (intact in concentrated HCl for at least 117 days). A new method of acid‐assisted crystalline redemption is used to readily cure the thermal damage to PFC‐1. With periodic integration of photoactive pyrene in the robust framework, PFC‐1 can efficiently encapsulate Doxorubicin (Doxo) for synergistic chemo‐photodynamic therapy, showing comparable therapeutic efficacy with the commercial Doxo yet considerably lower cytotoxicity. This work demonstrates the notorious stability issue of HOFs can be properly addressed through rational design, paving a way to develop robust HOFs and offering promising application perspectives.     

Entropically Driven Self‐Assembly of Bolaamphiphilic Perylene Dyes in Water

The specific hydrophobic effect involved in the self‐assembly of a bolaamphiphilic perylene bisimide (PBI) dye bearing oligoethylene glycol (OEG) chains has been identified. In pure water, the self‐assembly is entropically driven and enthalpically disfavored, as explored by optical spectroscopy and isothermal titration calorimetry studies. Besides strong π–π interactions between the PBI units that are primarily of enthalpic nature, the major contribution to the self‐assembly is the gain of entropy by release of confined water molecules from the hydration shell of the hydrophilic OEG moieties. Both contributions favor self‐assembly, but their countervailing thermodynamic parameters are reflected in an uncommon temperature dependence, which can be inverted upon gradual addition of an organic cosolvent that makes the π–π interaction increasingly dominant.     

Observation of CH⋅⋅⋅π Interactions between Methyl and Carbonyl Groups in Proteins

Protein structure and function is dependent on myriad noncovalent interactions. Direct detection and characterization of these weak interactions in large biomolecules, such as proteins, is experimentally challenging. Herein, we report the first observation and measurement of long‐range “through‐space” scalar couplings between methyl and backbone carbonyl groups in proteins. These J couplings are indicative of the presence of noncovalent C−H⋅⋅⋅π hydrogen‐bond‐like interactions involving the amide π network. Experimentally detected scalar couplings were corroborated by a natural bond orbital analysis, which revealed the orbital nature of the interaction and the origins of the through‐space J couplings. The experimental observation of this type of CH⋅⋅⋅π interaction adds a new dimension to the study of protein structure, function, and dynamics by NMR spectroscopy.