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1.
The microbial transfer of electrons to extracellularly located solid compounds, termed extracellular electron transport (EET), is critical for microbial electrode catalysis. Although the components of the EET pathway in the outer membrane (OM) have been identified, the role of electron/cation coupling in EET kinetics is poorly understood. We studied the dynamics of proton transport associated with EET in an OM flavocytochrome complex in Shewanella oneidensis MR-1. Using a whole-cell electrochemical assay, a significant kinetic isotope effect (KIE) was observed following the addition of deuterated water (D2O). The removal of a flavin cofactor or key components of the OM flavocytochrome complex significantly increased the KIE in the presence of D2O to values that were significantly larger than those reported for proton channels and ATP synthase, thus indicating that proton transport by OM flavocytochrome complexes limits the rate of EET.  相似文献   

2.
3.
Soluble methane monooxygenase (sMMO) is an enzyme that converts alkanes to alcohols using a di(μ‐oxo)diiron(IV) intermediate Q at the active site. Very large kinetic isotope effects (KIEs) indicative of significant tunneling are observed for the hydrogen transfer (H‐transfer) of CH4 and CH3CN; however, a relatively small KIE is observed for CH3NO2. The detailed mechanism of the enzymatic H‐transfer responsible for the diverse range of KIEs is not yet fully understood. In this study, variational transition‐state theory including the multidimensional tunneling approximation is used to calculate rate constants to predict KIEs based on the quantum‐mechanically generated intrinsic reaction coordinates of the H‐transfer by the di(μ‐oxo)diiron(IV) complex. The results of our study reveal that the role of the di(μ‐oxo)diiron(IV) core and the H‐transfer mechanism are dependent on the substrate. For CH4, substrate binding induces an electron transfer from the oxygen to one FeIV center, which in turn makes the μ‐O ligand more electrophilic and assists the H‐transfer by abstracting an electron from the C?H σ orbital. For CH3CN, the reduction of FeIV to FeIII occurs gradually with substrate binding and H‐transfer. The charge density and electrophilicity of the μ‐O ligand hardly change upon substrate binding; however, for CH3NO2, there seems to be no electron movement from μ‐O to FeIV during the H‐transfer. Thus, the μ‐O ligand appears to abstract a proton without an electron from the C?H σ orbital. The calculated KIEs for CH4, CH3CN, and CH3NO2 are 24.4, 49.0, and 8.27, respectively, at 293 K, in remarkably good agreement with the experimental values. This study reveals that diverse KIE values originate mainly from tunneling to the same di(μ‐oxo)diiron(IV) core for all substrates, and demonstrate that the reaction dynamics are essential for reproducing experimental results and understanding the role of the diiron core for methane oxidation in sMMO.  相似文献   

4.
The effects of charged species on proton‐coupled electron‐transfer (PCET) reaction should be of significance for understanding/application of important chemical and biological PCET systems. Such species can be found in proximity of activated complex in a PCET reaction, although they are not involved in the charge transfer process. Reported here is the first study of the above‐mentioned effects. Here, the effects of Na+, K+, Li+, Ca2+, Mg2+, and Me4N+ observed in PCET reaction of ascorbate monoanions with hexacyanoferrate(III) ions in H2O reveal that, in presence of ions, this over‐the‐barrier reaction entered into tunneling regime. The observations are: a) dependence of the rate constant on the cation concentration, where the rate constant is 71 (at I = 0.0023), and 821 (at 0.5M K+), 847 (at 1.0M Na+), and 438 M ?1 s?1 (at 0.011M Ca2+); b) changes of kinetic isotope effect (KIE) in the presence of ions, where kH/kD=4.6 (at I = 0.0023), and 3.4 (in the presence of 0.5M K+), 3.3 (at 1.0M Na+), 3.9 (at 0.001M Ca2+), and 3.9 (at 0.001M Mg2+), respectively; c) the isotope effects on Arrhenius pre‐factor where AH/AD=0.97 (0.15) in absence of ions, and 2.29 (0.60) (at 0.5M Na+), 1.77 (0.29) (at 1.0M Na+), 1.61 (0.25) (at 0.5M K+), 0.42 (0.16) (at 0.001M Ca2+) and 0.16 (0.19) (at 0.001M Mg2+); d) isotope differences in the enthalpies of activation in H2O and in D2O, where ΔΔH?(D,H)=3.9 (0.4) kJ mol?1 in the absence of cations, 1.3 (0.6) at 0.5M Na+, 1.8 (0.4) at 0.5M K+, 1.5 (0.4) at 1.0M Na+, 5.5 (0.9) (at 0.001M Ca2+), and 7.9 (2.8) (at 0.001M Mg2+) kJ mol?1; e) nonlinear proton inventory in reaction. In the H2O/dioxane 1 : 1, the observed KIE is 7.8 and 4.4 in the absence and in the presence of 0.1M K+, respectively, and AH/AD=0.14 (0.03). The changes when cations are present in the reaction are explained in terms of termolecular encounter complex consisting of redox partners, and the cation where the cation can be found in a near proximity of the reaction‐activated complex thus influencing the proton/electron double tunneling event in the PCET process. A molecule of H2O is involved in the transition state. The resulting ‘configuration’ is more ‘rigid’ and more appropriate for efficient tunneling with Na+ or K+ (extensive tunneling observed), i.e., there is more precise organized H transfer coordinate than in the case of Ca2+ and Mg2+ (moderate tunneling observed) in the reaction.  相似文献   

5.
Recently, it was shown that μ‐oxo‐μ‐peroxodiiron(III) is converted to high‐spin μ‐oxodioxodiiron(IV) through O?O bond scission. Herein, the formation and high reactivity of the anti‐dioxo form of high‐spin μ‐oxodioxodiiron(IV) as the active oxidant are demonstrated on the basis of resonance Raman and electronic‐absorption spectral changes, detailed kinetic studies, DFT calculations, activation parameters, kinetic isotope effects (KIE), and catalytic oxidation of alkanes. Decay of μ‐oxodioxodiiron(IV) was greatly accelerated on addition of substrate. The reactivity order of substrates is toluene<ethylbenzene≈cumene<trans‐β‐methylstyrene. The rate constants increased proportionally to the substrate concentration at low substrate concentration. At high substrate concentration, however, the rate constants converge to the same value regardless of the kind of substrate. This is explained by a two‐step mechanism in which anti‐μ‐oxodioxodiiron(IV) is formed by syn‐to‐anti transformation of the syn‐dioxo form and reacts with substrates as the oxidant. The anti‐dioxo form is 620 times more reactive in the C?H bond cleavage of ethylbenzene than the most reactive diiron system reported so far. The KIE for the reaction with toluene/[D8]toluene is 95 at ?30 °C, which the largest in diiron systems reported so far. The present diiron complex efficiently catalyzes the oxidation of various alkanes with H2O2.  相似文献   

6.
The UV‐dissipative mechanisms of the eumelanin building block 5,6‐dihydroxyindole‐2‐carboxylic acid (DHICA) and the 4,7‐dideutero derivative (DHICA‐d2) in buffered H2O or D2O have been characterized by using ultrafast time‐resolved fluorescence spectroscopy. Excitation of the carboxylate anion form, the dominating state at neutral pH, leads to dual fluorescence. The band peaking at λ=378 nm is caused by emission from the excited initial geometry. The second band around λ=450 nm is owed to a complex formed between the mono‐anion and specific buffer components. In the absence of complex formation, the mono‐anion solely decays non‐radiatively or by emission with a lifetime of about 2.1 ns. Excitation of the neutral carboxylic acid state, which dominates at acidic pH, leads to a weak emission around λ=427 nm with a short lifetime of 240 ps. This emission originates from the zwitterionic state, formed upon excitation of the neutral state by sub‐ps excited‐state intramolecular proton transfer (ESIPT) between the carboxylic acid group and the indole nitrogen. Future studies will unravel whether this also occurs in larger building blocks and ESIPT is a built‐in photoprotective mechanism in epidermal eumelanin.  相似文献   

7.
Hydroxylation of mesitylene by a nonheme manganese(IV)–oxo complex, [(N4Py)MnIV(O)]2+ ( 1 ), proceeds via one‐step hydrogen‐atom transfer (HAT) with a large deuterium kinetic isotope effect (KIE) of 3.2(3) at 293 K. In contrast, the same reaction with a triflic acid‐bound manganese(IV)‐oxo complex, [(N4Py)MnIV(O)]2+‐(HOTf)2 ( 2 ), proceeds via electron transfer (ET) with no KIE at 293 K. Interestingly, when the reaction temperature is lowered to less than 263 K in the reaction of 2 , however, the mechanism changes again from ET to HAT with a large KIE of 2.9(3). Such a switchover of the reaction mechanism from ET to HAT is shown to occur by changing only temperature in the boundary region between ET and HAT pathways when the driving force of ET from toluene derivatives to 2 is around ?0.5 eV. The present results provide a valuable and general guide to predict a switchover of the reaction mechanism from ET to the others, including HAT.  相似文献   

8.
Graphite electrodes modified with redox‐polymer‐entrapped yeast cells were investigated with respect to possible electron‐transfer pathways between cytosolic redox enzymes and the electrode surface. Either wild‐type or genetically modified Hansenula polymorpha yeast cells over‐expressing flavocytochrome b2 (FC b2) were integrated into Os‐complex modified electrodeposition polymers. Upon increasing the L ‐lactate concentration, an increase in the current was only detected in the case of the genetically modified cells. The overexpression of FC b2 and the related amplification of the FC b2/L ‐lactate reaction cycle was found to be necessary to provide sufficient charge to the electron‐exchange network in order to facilitate sufficient electrochemical coupling between the cells, via the redox polymer, to the electrode. The close contact of the Os‐complex modified polymer to the cell wall appeared to be a prerequisite for electrically wiring the cytosolic FC b2/L ‐lactate redox activity and suggests the critical involvement of a plasma membrane redox system. Insights in the functioning of whole‐cell‐based bioelectrochemical systems have to be considered for the successful design of whole‐cell biosensors or microbial biofuel cells.  相似文献   

9.
The hydrogen bonding interactions between cysteine (Cys) and formaldehyde (FA) were studied with density functional theory regarding their geometries, energies, vibrational frequencies, and topological features of the electron density. The quantum theory of atoms in molecules and natural bond orbital analyses were employed to elucidate the interaction characteristics in the Cys‐FA complexes. The intramolecular hydrogen bonds (H‐bonds) formed between the hydroxyl and the N atom of cysteine moiety in some Cys‐FA complexes were strengthened because of the cooperativity. Most of intermolecular H‐bonds involve the O atom of cysteine/FA moiety as proton acceptors, while the strongest H‐bond involves the O atom of FA moiety as proton acceptor, which indicates that FA would rather accept proton than providing one. The H‐bonds formed between the CH group of FA and the S atom of cysteine in some complexes are so weak that no hydrogen bonding interactions exist among them. In most of complexes, the orbital interaction of H‐bond is predominant during the formation of complex. The electron density (ρb) and its Laplace (?2ρb) at the bond critical point significantly correlate with the H‐bond parameter δR, while a linearly relationship between the second‐perturbation energy E(2) and ρb has been found as well. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012  相似文献   

10.
Neutral hydroxymethylene HCOH is an important intermediate in several chemical reactions; however, it is difficult to observe due to its high reactivity. In this work, neutral hydroxymethylene and formaldehyde were generated by charge exchange neutralization of their respective ionic counterparts and then were reionized and detected as positive‐ion recovery signals in neutralization–reionization mass spectrometry in a magnetic sector instrument of BEE geometry. The reionized species were characterized by their subsequent collision‐induced dissociation mass spectra. The transient hydroxymethylene neutral was observed to isomerize to formaldehyde with an experimental time span exceeding 13.9 µs. The vertical neutralization energy of the HCOH+? ion has also been assayed using charge transfer reactions between the fast ions and stationary target gases of differing ionization energy. The measured values match the result of ab initio calculations at the QCISD/6‐311 + G(d,p) and CCSD(T)/6‐311 + + G(3df,2p) levels of theory. Neutral hydroxymethylene was also produced by proton transfer from CH2OH+ to a strong base such as pyridine, confirmed by appropriate isotopic labeling. There is a kinetic isotope effect (KIE) for H+ versus D+ transfer from the C atom of the hydroxymethyl cation of ~3, consistent with a primary KIE of a nearly thermoneutral reaction. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

11.
The catalytic activity of Pt nanoparticles (PtNPs) with different sizes and shapes was investigated in a photocatalytic hydrogen‐evolution system composed of the 9‐mesityl‐10‐methylacridinium ion (Acr+–Mes: photocatalyst) and dihydronicotinamide adenine dinucleotide (NADH: electron donor), based on rates of hydrogen evolution and electron transfer from one‐electron‐reduced species of Acr+–Mes (Acr.–Mes) to PtNPs. Cubic PtNPs with a diameter of (6.3±0.6) nm exhibited the maximum catalytic activity. The observed hydrogen‐evolution rate was virtually the same as the rate of electron transfer from Acr.–Mes to PtNPs. The rate constant of electron transfer (ket) increased linearly with increasing proton concentration. When H+ was replaced by D+, the inverse kinetic isotope effect was observed for the electron‐transfer rate constant (ket(H)/ket(D)=0.47). The linear dependence of ket on proton concentration together with the observed inverse kinetic isotope effect suggests that proton‐coupled electron transfer from Acr.–Mes to PtNPs to form the Pt? H bond is the rate‐determining step for catalytic hydrogen evolution. When FeNPs were used instead of PtNPs, hydrogen evolution was also observed, although the hydrogen‐evolution efficiency was significantly lower than that of PtNPs because of the much slower electron transfer from Acr.–Mes to FeNPs.  相似文献   

12.
13.
We report the electron‐transport behaviors of a number of molecular junctions composed of π‐conjugated molecular wires. From calculations performed by using density functional theory (DFT) combined with the non‐equilibrium Green’s function (NEGF) method, we found that the length–conductivity relations are diverse, depending on the particular molecular structures. The results reveal that the conductance–length dependence follows an exponential law for many conjugated molecules with a single channel, such as oligothiophene, oligopyrrole and oligophenylene. Therefore, a quantitative relation between the energy gap (Eg) of the molecular wire and the attenuation factor β can be defined. However, when the molecular wires have multichannels, the decay of conductance does not follow the exponential relation. For example, the conductance of porphyrin‐based oligomers and fused thiophene decays almost linearly. The diversity of electron‐transport behaviors of molecular junctions is directly dominated by the electron‐transport pathway.  相似文献   

14.
Poly(9,9‐di‐n‐octylfluorene‐alt‐benzothiadiazole) [F8BT], displays very different charge‐transport properties for holes versus electrons when comparing annealed and pristine thin films and transport parallel (intrachain) and perpendicular (interchain) to the polymer axes. The present theoretical contribution focuses on the electron‐transport properties of F8BT chains and compares the efficiency of intrachain versus interchain transport in the hopping regime. The theoretical results rationalize significantly lowered electron mobility in annealed F8BT thin films and the smaller mobility anisotropy (μ/μ) measured for electrons in aligned films (i.e. 5–7 compared to 10–15 for holes).  相似文献   

15.
The rate constants for the gas‐phase reactions of three deuterated toluenes with hydroxyl radicals were measured using the relative rate technique over the temperature range 298–353 K at about 1 atm total pressure. The OH radicals were generated by photolysis of H2O2, and helium was used as the diluent gas. The disappearance of reactants was followed by online mass spectrometry, which resulted in high time resolution, allowing for a large amount of data to be collected and used in the determination of the Arrhenius parameters. The following Arrhenius expressions have been determined for these reactions (in units of cm3 molecule?1 s?1): k=(6.42?0.99+1.17)×10?13exp [(661±54)/T] for toluene‐d3, k=(2.11?0.69+1.03)×10?12exp [(287±128)/T]for toluene‐d5, and k=(1.40+0.44?0.33)×10?12exp [(404±88)/T]for toluene‐d8. The kinetic isotope effects (KIEs, kH/kD) of these reactions were 1.003 ± 0.042 for all three compounds at 298 K. The KIE for toluene‐d3 was temperature dependent; at 350 K, its KIE was 1.122+0.048?0.046. The KIE of toluene‐d5 and toluene‐d8 did not vary significantly with temperature. These KIE results suggest that methyl H‐atom abstraction is more important than aromatic OH addition at higher temperatures. © 2012 Wiley Periodicals, Inc. Int J Chem Kinet 44: 821–827, 2012  相似文献   

16.
The pharmacokinetics of pharmaceutical drugs can be improved by replacing C−H bonds with the more stable C−D bonds at the α-position to heteroatoms, which is a typical metabolic site for cytochrome P450 enzymes. However, the application of deuterated synthons is limited. Herein, we established a novel concept for preparing deuterated reagents for the successful synthesis of complex drug skeletons with deuterium atoms at the α-position to heteroatoms. (dn-Alkyl)diphenylsulfonium salts prepared from the corresponding nondeuterated forms using inexpensive and abundant D2O as the deuterium source with a base, were used as electrophilic alkylating reagents. Additionally, these deuterated sulfonium salts were efficiently transformed into dn-alkyl halides and a dn-alkyl azide as coupling reagents and a dn-alkyl amine as a nucleophile. Furthermore, liver microsomal metabolism studies revealed deuterium kinetic isotope effects (KIE) in 7-(d2-ethoxy)flavone. The present concept for the synthesis of deuterated reagents and the first demonstration of a KIE in a d2-ethoxy group will contribute to drug discovery research based on deuterium chemistry.  相似文献   

17.
The tautomerism of the synthesized 3‐arylpyrimido[4,5‐c]pyridazine‐5,7(6H,8H)‐diones ( 1a–d ) and 3‐aryl‐7‐thioxo‐7,8‐dihydro‐6H‐pyrimido[4,5‐c]pyridazine‐5‐ones ( 2a–d ) was studied in dimethyl sulfoxide (DMSO)‐d6. 1H NMR spectra of 1a–d showed a clustered water molecule in the structure backbone that is attached by strong intermolecular H bonding. The relation between the temperature and H bonding of the clustered water molecule with 1a was also studied as representative. The relation between the electronegativity (χ) of the substituent on phenyl ring and the chemical shifts of clustered water protons in 1a–d was also studied. All of 1a–d and also 2d compounds existed in lactam ( I ) form, whereas 2a–c compounds have two distinguished tautomers in DMSO‐d6 [lactam ( I ) and lactim ( II ) forms]. The solvent‐substrate proton exchange was examined in compounds 1a–d and 2a–d by adding one drop of D2O. All compounds (except 1d ) showed proton/deuterium exchange of the clustered water protons in DMSO by adding one drop of D2O. Some compounds (but not all of them) that are easily soluble in DMSO‐d6 containing D2O showed isotopic splitting (β‐isotope effect) in their 13C NMR spectra. Among them, compound 1a was the best evidence to help the spectral assignments and structure determination of predominant tautomer by carbon‐13 splitting (β‐isotope effect). Copyright © 2010 John Wiley & Sons, Ltd.  相似文献   

18.
The purpose of the study was to determine the distribution of the photosensitizer toluidine blue O (TBO) within Porphyromonas gingivalis and the possible mechanism(s) involved in the lethal photosensitization of this organism. The distribution of TBO was determined by incubating P. gingivalis with tritiated TBO (3H-TBO) and fractionating the cells into outer membrane (OM), plasma membrane (PM), cytoplasmic proteins, other cytoplasmic constituents and DNA. The percentage of TBO in each of the fractions was found to be, 86.7, 5.4, 1.9, 5.7 and 0.3%, respectively. The involvement of cytotoxic species in the lethal photosensitization induced by light from a helium-neon (HeNe) laser and TBO was investigated by using deuterium oxide (D2O), which prolongs the lifetime of singlet oxygen, and the free radical and singlet oxygen scavenger L-tryptophan. There were 9.0 log10 and 2 log10 reductions in the presence of D2O and H2O (saline solutions), respectively, at a light dose of 0.44 J (energy density = 0.22 J/cm2), suggesting the involvement of singlet oxygen. Decreased kills were attained in the presence of increasing concentrations of L-tryptophan. The effect of lethal photosensitization on whole cell proteins was determined by measuring tryptophan fluorescence, which decreased by 30% using 4.3 J (energy density = 4.3 J/ cm2) of light. Effects on the OM and PM proteins were determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis. There was evidence of change in the molecular masses of several PM proteins and OM proteins compared to controls. There was evidence of damage to the DNA obtained from irradiated cells. Scanning electron microscopic studies showed that there was coaggre-gation of P. gingivalis cells when sensitized and then exposed to laser light. These results suggest that lethal photosensitization of P. gingivalis may involve changes in OM and/or PM proteins and DNA damage mediated by singlet oxygen.  相似文献   

19.
Metal‐superoxo species are involved in a variety of enzymatic oxidation reactions, and multi‐electron oxidation of substrates is frequently observed in those enzymatic reactions. A CrIII‐superoxo complex, [CrIII(O2)(TMC)(Cl)]+ ( 1 ; TMC=1,4,8,11‐tetramethyl‐1,4,8,11‐tetraazacyclotetradecane), is described that acts as a novel three‐electron oxidant in the oxidation of dihydronicotinamide adenine dinucleotide (NADH) analogues. In the reactions of 1 with NADH analogues, a CrIV‐oxo complex, [CrIV(O)(TMC)(Cl)]+ ( 2 ), is formed by a heterolytic O−O bond cleavage of a putative CrII‐hydroperoxo complex, [CrII(OOH)(TMC)(Cl)], which is generated by hydride transfer from NADH analogues to 1 . The comparison of the reactivity of NADH analogues with 1 and p ‐chloranil (Cl4Q) indicates that oxidation of NADH analogues by 1 proceeds by proton‐coupled electron transfer with a very large tunneling effect (for example, with a kinetic isotope effect of 470 at 233 K), followed by rapid electron transfer.  相似文献   

20.
Pyrazolo[3,4‐b]quinoline derivatives are reported to be highly efficient organic fluorescent materials suitable for applications in light‐emitting devices. Although their fluorescence remains stable in organic solvents or in aqueous solution even in the presence of H2O, halide salts (LiCl), alkali (NaOH) and weak acid (acetic acid), it suffers an efficient quenching process in the presence of protic acid (HCl) in aqueous or ethanolic solution. This quenching process is accompanied by a change in the UV spectrum, but it is reversible and can be fully recovered. Both steady‐state and transient fluorescence spectra of 1‐phenyl‐3,4‐dimethyl‐1H‐pyrazolo‐[3,4‐b]quinoline (PAQ5) during quenching are measured and analyzed. It is found that a combined dynamic and static quenching mechanism is responsible for the quenching processes. The ground‐state proton‐transfer complex [PAQ5 ??? H+] is responsible for static quenching. It changes linearly with proton concentration [H+] with a bimolecular association constant KS=1.95 M ?1 controlled by the equilibrium dissociation of HCl in ethanol. A dynamic quenching constant KD=22.4 M ?1 is obtained by fitting to the Stern–Volmer equation, with a bimolecular dynamic quenching rate constant kd=1.03×109 s?1 M ?1 under ambient conditions. A change in electron distribution is simulated and explains the experiment results.  相似文献   

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