The structure, vibrational spectra and nonlinear optical properties of the L-lysine x tartaric acid complex--theoretical studies

The room temperature X-ray studies of L-lysine x tartaric acid complex are not unambiguous. The disorder of three atoms of carbon in L-lysine molecule is observed. These X-ray studies are ambiguous. The theoretical geometry study performed by DFT methods explain the most doubts which are connected with crystallographic measurements. The theoretical vibrational frequencies and potential energy distribution (PED) of L-lysine x tartaric acid were calculated by B3LYP method. The calculated frequencies were compared with experimental measured IR spectra. The complete assignment of the bands has been made on the basis of the calculated PED. The restricted Hartee-Fock (RHF) methods were used for calculation of the hyperpolarizability for investigated compound. The theoretical results are compared with experimental value of beta.     

New complexes of guanidine with acetic, trichloroacetic and trifluoroacetic acids. The DFT structural and vibrational investigations

The density functional theory (DFT) methods were used for theoretical studies of three compounds. The guanidine molecule is a main structural unit in these complexes, while the studied acids have similar chemical character. The family of simple guanidinium compounds is intensively investigated as potential materials with ferroic phase transitions. Among studied "guanidinium" complexes, those with crystal structure without macroscopic center of inversion, exhibit NLO properties. For three compounds: CN(3)H(5)CH(3)COOH, CN(3)H(5)CCl(3)COOH and CN(3)H(5)CF(3)COOH the detailed theoretical calculations were performed. For each complex the equilibrium geometry was obtained. The calculated geometrical parameters (bond lengths and angles) of all investigated complexes are compared. The theoretical vibrational frequencies and potential energy distribution (PED) of three "guanidinium" compounds were calculated by B3LYP method. On the basis of PED calculations the detailed assignments of bands for new chemical complexes are presented. The real crystals were obtained in the case of CN(3)H(5)CH(3)COOH compound, only. The theoretical results can be used in future, when the synthesis of trichloroacetic and trifluoroacetic analogues of CN(3)H(5)CH(3)COOH will be done.     

Diguanidinium hydrogenarsenate monohydrate and its deuterated analogue vibrational, DSC and X-ray investigations

The crystal structure of diguanidinium hydrogenarsenate monohydrate has been found to belong to the P42(1)/c space group of the tetragonal system, with Z = 8, a = 17.114(2) A, c = 7.3500(10) A. In this complex, a network of hydrogen bonds links water molecules and hydrogenarsenate ions. The hydrogenarsenate ions form hydrogen-bonded chains along the crystallographic c-axis. Detailed vibrational studies have been carried out (FTIR and FT-Raman on powder samples, polarized FTIR microscope on a small single crystal at room temperature). The vibrational spectra are discussed in relation to the crystal structure. Calorimetric (DSC) studies have been performed, but no phase transition was found in the temperature range 100-350 K.     

Streptidinium sulfate monohydrate

In streptidinium sulfate monohydrate {systematic name: 1,1′‐[(1S,3R,4S,6R)‐2,4,5,6‐tetrahydroxycyclohexane‐1,3‐diyl]diguanidinium sulfate monohydrate}, C₈H₂₀N₆O₄²⁺·SO₄²⁻·H₂O, at 100 (2) K, the components are arranged in double helices based on hydrogen bonds. One helix contains streptidinium cations and the other contains disordered sulfate anions and solvent water molecules. The helices are linked into a three‐dimensional hydrogen‐bonded network by O—H...O and N—H...O hydrogen bonds.     

Theoretical IR,Raman and NMR spectra of 1,2- and 1,3-dimethylenecyclobutane

Equilibrium geometries, rotational constants, harmonic vibrational frequencies, infrared intensities, Raman activities, and ¹H and ¹³C NMR spectra were calculated for 1,2-dimethylenecyclobutane and its less stable isomer 1,3-dimethylenecyclobutane by using MP2, DFT (B3PW91), and RHF theoretical methods involving the 6-311++G⁷ basis set.The properties calculated theoretically have been compared with the experimental values. The internal coordinates defined for both isomers were used in the potential energy distribution (PED) analysis. The theoretical vibrational and NMR spectra form the basis to differentiate particular compounds in reaction mixture.     

Molecular structure,vibrational spectra and potential energy distribution of protopine using <Emphasis Type="Italic">ab initio</Emphasis> and density functional theory

This work is devoted to theoretical study on molecular structure of protopine. The equilibrium geometry, harmonic vibrational frequencies and infrared intensities were calculated by ab initio Hartree-Fock and density functional B3LYP methods with the 6-31G(d) basis set and were interpreted in terms of potential energy distribution (PED) analysis. The internal coordinates were optimized repeatedly for many times to maximize the PED contributions. A detailed interpretation of the infrared spectra of protopine is reported. The calculations are in agreement with experiment. The thermodynamic functions of the title compound were also performed at HF/6-31G(d) and B3LYP/6-31G(d) level of theory. The FT-IR spectra of protopine were recorded in solid phase.     

Theoretical and experimental comparative studies of nonlinear optical properties for selected melaminium compounds

The bis(melaminium) sulphate dihydrate, 2,4,6-triamine-1,3,5-triazin-1,3-ium tartrate monohydrate, 2,4,6-triamine-1,3,5-triazin-1-ium hydrogenphthalate, 2,4,6-triamine-1,3,5-triazin-1-ium acetate acetic acid solvate monohydrate, 2,4,6-triamine-1,3,5-triazin-1-ium bis(selenate) trihydrate, melaminium diperchlorate hydrate, melaminium bis(trichloroacetate) monohydrate and melaminium bis(4-hydroxybenzenesulphonate) dihydrate were discovered recently as perspective materials for nonlinear optical applications. On the basis of X-ray structures for eight melaminium compounds the time dependent Hartree Fock (TDHF) method was used for calculation of the polarizability, and first and second hyperpolarizability. Detailed directional studies of calculated hyperpolarizability for all investigated melaminium compounds are shown. The theoretical results are compared with experimental values of β.     

Crystal growth, structural and spectroscopic analysis of hypoxanthinium chloride monohydrate

Protonated form of hypoxanthinium chloride monohydrate single crystal has been grown from dilute hydrochloric acid. Single crystal X-ray analysis was carried out and the titled crystal belong to the monoclinic P2(1)/c space group. Hypoxanthine is protonated at N(1) with the hypoxanthine cations, linked to chlorine anion via weak bifurcated N-H...Cl hydrogen bonds and interconnected by hydrogen bonding contacts of the type N-H...O. Infrared, Raman and UV spectroscopic tools were applied to characterize hypoxanthinium chloride monohydrate. By applying group theoretical methods the internal and external modes of vibrations of the title crystal have been identified and discussed.     

Characterization of dehydration behavior of untreated and pulverized creatine monohydrate powders

Creatine, which is well known as an important substance for muscular activity, is synthesized from amino acids such as glycine, arginine and ornithine in liver and kidney. It then accumulates in skeletal muscle as creatine phosphoric acid. The aim of this study was to understand the dehydration behavior of untreated and pulverized creatine monohydrate at various temperatures. The removal of crystal water was investigated by using differential scanning calorimetry (DSC), X-ray powder diffraction and scanning electron microscopy (SEM). The X-ray diffraction pattern of untreated and pulverized creatine monohydrate agreed with reported data for creatine monohydrate. However, the diffraction peaks of the (1 0 0), (2 0 0) and (3 0 0) planes of pulverized creatine monohydrate were much stronger than those of untreated creatine monohydrate. On the other hand, the diffraction peaks of the (0 1 2) and (0 1 3) planes of untreated creatine monohydrate were much stronger than those of pulverized creatine monohydrate. The dehydration of untreated and pulverized creatine monohydrate was investigated at various storage temperatures, and the results indicated that untreated and pulverized creatine monohydrate were transformed into the anhydrate at more than 30 °C. After dehydration, the particles of untreated and pulverized creatine anhydrate had many cracks. The dehydration kinetics of untreated and pulverized creatine monohydrate were analyzed by the Hancock–Sharp equation on the basis of the isothermal DSC data. The dehydrations of untreated and pulverized creatine monohydrate both followed a zero-order mechanism (Polany–Winger equation). However, the transition rate constant, calculated from the slope of the straight line, was about 2.2–7.7 times higher for pulverized creatine monohydrate than for untreated creatine monohydrate. The Arrhenius plots (natural logarithm of the dehydration rate constant versus the reciprocal of absolute temperature) of the isothermal DSC data for untreated and pulverized creatine monohydrate were linear. The activation energies of dehydration in the 40–60 °C range for untreated and pulverized creatine monohydrate were 15.02 and 10.1 kJ/mol, respectively. Dehydration of untreated creatine monohydrate had a pronounced effect on the particle size of the powder. Compared with pulverized creatine monohydrate, the particle size of untreated creatine monohydrate was significantly decreased by dehydration.     

Molecular structure, vibrational spectra and NBO analysis of phenylisothiocyanate by density functional method

The molecular geometry, vibrational frequencies and NBO analysis of phenylisothiocyanate (PITC) in the ground state have been calculated by using density functional theory calculation (B3LYP) with 6-311++G(d,p) basis set. The optimized geometrical parameters obtained by DFT calculations are in good agreement with experimental values. Comparison of the observed fundamental vibrational frequencies of the PITC and calculated result by density functional theory (B3LYP) indicates B3LYP is superior for molecular vibrational problems. The entropy of the title compound was also performed at HF/B3LYP/6-311++G(d,p) levels of theory. Natural bond orbital (NBO) analysis of title molecule is also carried out. A detailed interpretation of the IR and Raman spectra of PITC is reported on the basis of the calculated potential energy distribution (PED). The theoretical spectrogram for IR spectrum of the title molecule has been constructed.     

Elusive structure of HCl monohydrate

The study addresses the structure of crystalline HCl monohydrate which is composed of H3O+ and Cl-. The published x-ray diffraction patterns indicate an element of disorder, the nature of which is debated in the literature and is addressed in the present study. The computational investigations include searches for alternative crystal structures employing an empirical potential, and on-the-fly simulations as implemented in the density functional code QUICKSTEP employing Gaussian basis sets. The experimental work focuses on Fourier-transform infrared (FTIR) spectra of crystal nanoparticles. Simulations of FTIR spectra and of the x-ray diffraction patterns are consistent with crystal monohydrate structure composed of ferroelectric domains, joined by "boundary tissue" of antiferroelectric structure.     

Theoretical IR and Raman spectra of diketene and its 3-methylene isomer

The IR and Raman spectra of diketene, 4-methylene-2-oxetanone, and its less stable isomer, 3-methylene-2-oxetanone, were calculated at the MP2, DFT B3PW91 and RHF levels using 6-311++G** basis set. The internal coordinates were defined for both isomers and used in potential energy distribution (PED) analysis. The PED analysis of the theoretical spectra forms the basis for a detection of the 3-methylene isomer traces in a reaction mixture as well as for elucidation of the future matrix isolation IR and/or Raman spectra.     

Synthesis of a water-soluble cationic chiral diamine ligand bearing a diguanidinium and application in asymmetric transfer hydrogenation

A novel water-soluble cationic N-monosulfonated chiral diamine ligand diguanidinium 1c was easily prepared from (R,R)-DPEN and its rhodium complex and was successfully applied in the asymmetric transfer hydrogenation of prochiral ketones and imines in water by using sodium formate and formic acid as co-hydrogen donors. Various substrates were reduced with high yields and good to excellent enantioselectivities (up to >99% ee).     

FT-Raman and FT-IR spectra, vibrational assignments and density functional studies of 5-bromo-2-nitropyridine

The Fourier transform Raman and Fourier transform infrared spectra of 5-bromo-2-nitropyridine were recorded in the solid phase. The equilibrium geometry, natural atomic charges, harmonic vibrational frequencies, infrared intensities and Raman scattering activities were calculated by density functional B3LYP method with the 6-311++G(d,p) basis set. The scaled theoretical wavenumbers showed very good agreement with the experimental values. A detailed interpretations of the infrared and Raman spectra of 5-bromo-2-nitropyridine is reported on the basis of the calculated potential energy distribution (PED). The theoretical spectrograms for the Raman and IR spectra of the title molecule have been constructed.     

Growth, thermal, and optical properties of l-asparagine monohydrate NLO single crystal

Single crystal of l-asparagine monohydrate (LAM), organic nonlinear optical material has been grown by slow evaporation solution growth technique. Single crystal X-ray diffraction analysis was employed to identify the cell parameters. FT-IR analysis was used to estimate the qualitative presence of the amino acids in the grown crystal. Anisotropy properties like thermal and dielectric properties were studied on the grown crystal. The sample was thermally stable up to 125 °C. Also various thermodynamic properties were calculated and reported for the first time. Optical properties such as optical absorption, second harmonic generation, photoluminescence and photoconductivity analysis were also studied on the grown crystal. Optical absorption studies showed a lower UV cut-off of 225 nm. The SHG efficiency of the sample was seven times higher than that of KDP. Photoluminescence study confirms the suitability of the material for the generation of blue radiation. Multilayer plate-like pattern of growth was observed by scanning electron microscopy. The photoconductivity study confirms that the LAM crystal has negative photoconducting nature.     

Crystal structure and density functional theory study on structural properties and energies of a isonicotinohydrazide compound

An X-ray and a theoretical study of the structure of the isoniazid derivative N'-(4-dimethylaminobenzylidene)-isonicotinohydrazide monohydrate (1) are reported. In this work, we will report a combined experimental and theoretical study on the molecular structure, vibrational spectra and energies of N'-(4-dimethylaminobenzylidene)-isonicotinohydrazide monohydrate. The calculated parameters are in good agreement with the corresponding X-ray diffraction values. The FTIR spectrum in the range of 400-4000 cm-1 of N'-(4-dimethylaminobenzylidene)-isonicotinohydrazide monohydrate has been recorded. The molecular geometry and vibrational frequencies and energies in the ground state are calculated by using the DFT (B3LYP, PBE1PBE) methods with 6-311G** basis sets. The calculated HOMO and LUMO energies also confirm that charge transfer occurs within the molecule. The geometries and normal modes of vibrations obtained from B3LYP/PBE1PBE/6-311G** calculations are in good agreement with the experimentally observed data.     

Sibutramine hydrochloride monohydrate

In the present work, the thermal decomposition of sibutramine hydrochloride monohydrate (SBT) (an appetite suppressant agent) was studied using differential scanning calorimetry (DSC) and thermogravimetry/derivative thermogravimetry (TG/DTG). Solid-state characterization was carried out by diffuse reflectance infrared fourier transform spectroscopy (DRIFT), scanning electron microscopy (SEM) and X-ray powder diffraction (XRPD). Isothermal and non-isothermal methods were employed to determine the kinetic data of decomposition process. From isothermal experiments, activation energy (Ea) can be obtained from slope of ln t versus 1/T, and the value obtained was 96.06 and 101.43 kJ mol⁻¹ in N₂ and air atmospheres, respectively. For non-isothermal method Ea can be obtained from plot of logarithms of heating rates, as a function of inverse of temperature, resulting in a value of 96.56 and 98.22 kJ mol⁻¹ in N₂ and air atmospheres, respectively. The compatibilities of several commonly used pharmaceutical excipients (microcrystalline cellulose, magnesium stearate, colloidal silicon dioxide, lactose monohydrate) and empty hard-gelatin capsules with SBT were evaluated using DSC. The 1:1 physical mixtures of these excipients with SBT showed physical interaction of the drug with magnesium stearate. On the other hand, DRIFT results did not evidence any chemical modifications.