Configuration and internal dynamics of CH2ClF...krypton

The molecular complex chlorofluoromethane-krypton has been investigated by Fourier transform microwave spectroscopy in a supersonic expansion. The rotational spectra have been assigned for the CH235ClF...84Kr, CH235ClF...86Kr, and CH237ClF...84Kr species, showing that, in the equilibrium configuration, the krypton atom is located out of the ClCF plane, interacting with both F and Cl atoms. All rotational transitions are split in several 35Cl or 37Cl quadrupole components, each of them further split into two lines, due to the tunneling motion of the Kr atom between two equivalent positions, below and above the ClCF plane. The feasible low-energy pathway between these two structurally degenerate conformations is described, in a first approximation, by a circular motion around the C-Cl bond, with a barrier estimated to be about 74 cm(-1).     

Rotational spectra and properties of complexes B···ICF3 (B = Kr or CO) and a comparison of the efficacy of ICl and ICF3 as iodine donors in halogen bond formation

The ground-state rotational spectra of two weakly bound complexes B···ICF(3) (B = Kr or CO) formed by trifluoroiodomethane have been observed in pulsed jets by using two types of Fourier-transform microwave spectroscopy (chirped-pulse and Fabry-Perot cavity). Both complexes exhibit symmetric-top type spectra, thus indicating that the Kr atom in Kr···ICF(3) and both the C and O atoms in OC···ICF(3) lie along the C(3) axis of ICF(3). The rotational constant B(0), the centrifugal distortion constants D(J) and D(JK), and the iodine nuclear quadrupole coupling constant χ(aa)(I) were determined for each of the isotopologues (84)Kr···ICF(3), (86)Kr···ICF(3), (16)O(12)C···ICF(3), (16)O(13)C···ICF(3), and (18)O(12)C···ICF(3). Interpretation of the spectroscopic constants reveals that the carbon atom of CO is adjacent to I and participates in the weak bond in OC···ICF(3). Simple models based on unperturbed component geometries lead to the distances r(Kr···I) = 3.830(1) ? and r(C···I) = 3.428(1) ? in Kr···ICF(3) and OC···ICF(3), respectively, and to the quadratic force constants for stretching of the weak bond k(σ) = 2.80 N m(-1) and 3.96 N m(-1), respectively. The distances r(Z···I) (Z is the acceptor atom in B), the k(σ) values, and the angular geometries of the pair of complexes B···ICF(3) and B···ICl for a given B are compared when B = Kr, CO, H(2)O, H(2)S, or NH(3). The comparison reveals that the iodine bond in B···ICF(3) is systematically longer and weaker than that of B···ICl, while the angular geometry of the B···I moiety is isomorphic in B···ICF(3) and B···ICl for a given B. It is concluded that -CF(3) is less effective than -Cl as an electron-withdrawing group when attached to an I atom and that the angular geometries of the B···ICF(3) can be predicted by means of a simple rule that holds for many hydrogen- and halogen-bonded complexes.     

The spectroscopic characterization of the methoxy radical. III. Rotationally resolved Ã2A1-X̃2E electronic and X̃2E submillimeter wave spectra of partially deuterated CH2DO and CHD2O radicals

Rotationally resolved laser induced fluorescence and stimulated emission pumping A?(2)A(1)-X?(2)E spectra, along with pure rotational spectra in the 153-263 GHz region within the E(3/2) component of the ground state in asymmetrically deuterated methoxy radicals CH(2)DO and CHD(2)O have been observed. The combined data set allows for the direct measurement with high precision of the energy separation between the E(1/2) and E(3/2) components of the ground state and the energy separation between the parity stacks in the E(3/2) component of the ground state. The experimentally observed frequencies in both isotopologues are fit to an effective rotational Hamiltonian accounting for rotational and spin-rotational effects arising in a near-prolate asymmetric top molecule with dynamic Jahn-Teller distortion. Isotopic dependencies for the molecular parameters have been successfully implemented to aid the analysis of these very complex spectra. The analysis of the first and second order contributions to the effective values of molecular parameters has been extended to elucidate the physical significance of resulting molecular parameters. Comparisons of measured parameters, e.g., spin-orbit coupling, rotational and spin-rotation constants, are made among the 5 methoxy isotopologues for which data is now available. Comparisons of experimental results, including the derived geometric structure at both the C(3v) conical intersection and at the Jahn-Teller distorted minima, are made with quantum chemistry calculations.     

Analysis of the rotational structure in the high-resolution infrared spectrum of trans-hexatriene-1-13C1: a semiexperimental equilibrium structure for the C6 backbone of trans-hexatriene

trans-Hexatriene-1-(13)C(1) (tHTE-1-(13)C(1)) has been synthesized, and its high-resolution (0.0015 cm(-1)) infrared spectrum has been recorded. The rotational structure in the C-type bands for ν(26) at 1011 cm(-1) and ν(30) at 894 cm(-1) has been analyzed. To the 1458 ground state combination differences from these bands, ground state rotational constants were fitted to a Watson-type Hamiltonian to give A(0) = 0.8728202(9), B(0) = 0.0435868(4), and C(0) = 0.0415314(2) cm(-1). Upper state rotational constants for the ν(30) band were also fitted. Predictions of the ground state rotational constants for tHTE-1-(13)C(1) from a B3LYP/cc-pVTZ model with scale factors based on the normal species were in excellent agreement with observations. Similar good agreement was found between predicted and observed ground state rotational constants for the three (13)C(1) isotopologues of cis-hexatriene, as determined from microwave spectroscopy. Equilibrium rotational constants for tHTE and its three (13)C(1) isotopologues, of which two were predicted, were used to find a semiexperimental equilibrium structure for the C(6) backbone of tHTE. This structure shows increased structural effects of π-electron delocalization in comparison with butadiene and some differences from the cis isomer of HTE. Structures predicted with the MP2/cc-pVTZ model are also compared.     

Characterization of C-H...π interactions in the structure of the CHClF(2)-HCCH weakly bound complex

The microwave spectra of four isotopologues of the CHClF(2)-HCCH dimer have been measured and used to determine the structure of the complex. An initial scan over the 7-18 GHz region using the chirped-pulse microwave spectrometer at the University of Virginia provided initial assignments of the (35)Cl and (37)Cl isotopologues, with two additional H(13)C(13)CH species assigned using the resonant cavity Balle-Flygare microwave spectrometer at Eastern Illinois University. For the most abundant isotopologue, the rotational constants and quadrupole coupling constants are: A = 3301.21(4) MHz, B = 1353.4268(19) MHz, C = 1153.7351(18) MHz, χ(aa) = 34.681(12) MHz, χ(bb) = -69.70(3) MHz, χ(cc) = 35.02(2) MHz and χ(ab) = -8.8(3) MHz, in good agreement with ab initio calculations at the MP2/6-311++G(2d,2p) level. The alignment of CHClF(2) with respect to acetylene reveals a C-Hπ interaction, with a secondary C-ClH-C interaction also present between the two monomers. The fitted distance between the CHClF(2) hydrogen atom and the center of the triple bond is 2.730(6) ?, the distance between the chlorine atom and the acetylenic hydrogen is 3.061(38) ?, and the C-Hπ angle is 148.2(6)°. In addition, the centrifugal distortion constants give an estimate of the binding energy for the weak interaction of about 4.9(5) kJ mol(-1), in reasonable agreement with several similar complexes.     

Ab initio potential energy surface and bound states for the Kr-OCS complex

The first ab initio potential energy surface of the Kr-OCS complex is developed using the coupled-cluster singles and doubles with noniterative inclusion of connected triples [CCSD(T)]. The mixed basis sets, aug-cc-pVTZ for the O, C, and S atom, and aug-cc-pVQZ-PP for the Kr atom, with an additional (3s3p2d1f) set of midbond functions are used. A potential model is represented by an analytical function whose parameters are fitted numerically to the single point energies computed at 228 configurations. The potential has a T-shaped global minimum and a local linear minimum. The global minimum occurs at R = 7.146 a(0), θ = 105.0° with energy of -270.73 cm(-1). Bound state energies up to J = 9 are calculated for three isotopomers (82)Kr-OCS, (84)Kr-OCS, and (86)Kr-OCS. Analysis of the vibrational wavefunctions and energies suggests the complex can exist in two isomeric forms: T-shaped and quasi-linear. The calculated transition frequencies and spectroscopic constants of the three isotopomers are in good agreement with the experimental values.     

Free-jet rotational spectrum and tunneling motion of difluoromethane...xenon

The rotational spectra of three isotopologues of difluoromethane...xenon have been investigated by free-jet millimeter-wave absorption spectroscopy. Only mu(c)-type transitions have been observed, all of them evenly split due to the internal motion of Xe relative to the difluoromethane moiety. The vibrational splitting, 39.1(3) MHz, has been used to estimate the tunneling barrier, V(2) = 109 cm(-1). Information on the dissociation energy has been deduced from centrifugal distortion effects (E(B) = 1.8 kJ mol(-1)). The xenon atom lies in the sigma(v) symmetry plane of difluoromethane containing the hydrogen atoms, at an r(0) distance of 3.816 A from its center of mass (cm), and forms a Xe-cm-C r(0) angle of 118 degrees . The observed conformation is in agreement with the minimum found with a distributed polarizability model.     

Internal dynamics features in the free jet rotational spectrum of the acetaldehyde-Kr molecular complex

The structure and the dynamics of internal motions in the complex formed between acetaldehyde and Kr are studied by free jet absorption microwave spectroscopy performed in the range 60-78 GHz. The fourfold structure of each rotational line is evidence of the vibration-rotation coupling between the overall rotation of the complex, a tunneling motion of the Kr atom between two equivalent positions and the internal rotation of the methyl group in the acetaldehyde moiety. The four sets of transitions could be fitted with a coupled Hamiltonian which allows for the Coriolis interaction obtaining the energy separation between the vibrational energy levels related to the tunneling motion, while the observed splittings due to the methyl group internal rotation were analyzed independently with an appropriate model. The potential energy barriers for the tunneling motion and the internal rotation of the methyl group have been calculated and the interaction of the rare gas atom with the acetaldehyde moiety is reflected in the change of the V(3) barrier to internal rotation in going from the molecule to the weakly bound complex.     

Microwave spectrum and structural parameters for the formamide-formic acid dimer

The rotational spectra for six isotopologues of the complex formed between formamide and formic acid have been measured using a pulsed-beam Fourier transform microwave spectrometer and analyzed to obtain rotational constants and quadrupole coupling parameters. The rotational constants and quadrupole coupling strengths obtained for H (12)COOH-H(2) (14)NCOH are A = 5889.465(2), B = 2148.7409(7), 1575.1234(6), eQq(aa) = 1.014(5), eQq(bb) = 1.99(1), and eQq(cc) = -3.00(1)?MHz. Using the 15 rotational constants obtained for the H (13)COOH, HCOOD, DCOOH, and H(2) (15)NCHO isotopologues, key structural parameters were obtained from a least-squares structure fit. Hydrogen bond distances of 1.78 A? for R(O3?H1) and 1.79 A? for R(H4?O1) were obtained. The "best fit" value for the angle(C-O-H) of formic acid is significantly larger than the monomer value of 106.9° with an optimum value of 121.7(3)°. The complex is nearly planar with inertial defect Δ = -0.158?amu A?(2). The formamide proton is moved out of the molecular plane by 15(3)° for the best fit structure. Density functional theory using B3PW91, HCTH407, and TPSS as well as MP2 and CCSD calculations were performed using 6-311++G(d,p) and the results were compared to experimentally determined parameters.     

Molecular structures of the two most stable conformers of free glycine

The equilibrium molecular structures of the two lowest-energy conformers of glycine, Gly-Ip and Gly-IIn, have been characterized by high-level ab initio electronic structure computations, including all-electron cc-pVTZ CCSD(T) geometry optimizations and 6-31G* MP2 quartic force fields, the latter to account for anharmonic zero-point vibrational effects to isotopologic rotational constants. Based on experimentally measured vibrationally averaged effective rotational constant sets of several isotopologues and our ab initio data for structural constraints and zero-point vibrational shifts, least-squares structural refinements were performed to determine improved Born-Oppenheimer equilibrium (r(e)) structures of Gly-Ip and Gly-IIn. Without the ab initio constraints even the extensive set of empirical rotational constants available for 5 and 10 isotopologues of Gly-Ip and Gly-IIn, respectively, cannot satisfactorily fix their molecular structure. Excellent agreement between theory and experiment is found for the rotational constants of both conformers, the rms residual of the final fits being 7.8 and 51.6 kHz for Gly-Ip and Gly-IIn, respectively. High-level ab initio computations with focal point extrapolations determine the barrier to planarity separating Gly-IIp and Gly-IIn to be 20.5 +/- 5.0 cm(-1). The equilibrium torsion angle tau(NCCO) of Gly-IIn, characterizing the deviation of its heavy-atom framework from planarity, is (11 +/- 2) degrees. Nevertheless, in the ground vibrational state the effective structure of Gly-IIn has a plane of symmetry.     

How Water Interacts with Halogenated Anesthetics: The Rotational Spectrum of Isoflurane–Water

The rotational spectra of several isotopologues of the 1:1 complex between the inhaled anesthetic isoflurane and water have been recorded and analyzed by using Fourier transform microwave spectroscopy. The rotational spectrum showed a single rotamer, corresponding to the configuration in which the most stable conformer of isolated isoflurane is linked to the water molecule through an almost linear C?H???O weak hydrogen bond. All transitions display a hyperfine structure due to the ³⁵Cl (or ³⁷Cl) nuclear quadrupole effects.     

Characterisation of H2S···CuCl and H2S···AgCl isolated in the gas phase: a rigidly pyramidal geometry at sulphur revealed by rotational spectroscopy and ab initio calculations

Pure rotational spectra of the ground vibrational states of eight isotopologues of H(2)S···CuCl and twelve isotopologues of H(2)S···AgCl have been analysed allowing rotational constants and hyperfine coupling constants to be determined. The molecular structures have been determined from the measured rotational constants and are presented alongside the results of calculations at the CCSD(T) level. Both molecules have C(s) symmetry at equilibrium and are pyramidal at the sulphur atom. The chlorine, metal, and sulphur atoms are collinear while the local C(2) axis of the hydrogen sulphide molecule intersects the axis defined by the heavy atoms at an angle, φ = 74.46(2)° for Cu and φ = 78.052(6)° for Ag. The molecular geometries are rationalised using simple rules that invoke the electrostatic interactions within the complexes. Centrifugal distortion constants, Δ(J), and nuclear quadrupole coupling constants, χ(aa)(Cu) and χ(aa)(Cl) for H(2)S···CuCl are presented for the first time. The geometry of H(2)S···AgCl is determined with fewer assumptions and greater precision than previously.     

Microwave spectrum, dipole moment, and internal dynamics of the methyl fluoride-carbonyl sulfide weakly bound complex

Rotational spectra for the normal and four isotopically substituted species of the 1:1 complex between methyl fluoride (H3CF) and carbonyl sulfide (OCS) have been measured using Fourier-transform microwave spectroscopy in the 5-16 GHz frequency region. The observed spectra fit well to a semirigid Watson Hamiltonian, and an analysis of the rotational constants has allowed a structure to be determined for this complex. The dipole moment vectors of the H3CF and OCS monomers are aligned approximately antiparallel with a C...C separation of 3.75(3) A and with an ab plane of symmetry. The values of the Pcc planar moments were found to be considerably different from the expected rigid values for all isotopologues. An estimate of approximately 14.5(50) cm-1 for the internal rotation barrier of the CH3 group with respect to the framework of the complex has been made using the Pcc values for the H3CF-OCS and D3CF-OCS isotopic species. Two structures, very close in energy and approximately related by a 60 degrees rotation about the C3 axis of the methyl fluoride, were identified by ab initio calculations at the MP2/6-311++G(2d,2p) level and provide reasonable agreement with the experimental rotational constants and dipole moment components.     

Microwave rotational spectra and structures of 2-fluoropyridine and 3-fluoropyridine

The ground state rotational spectra of 2-fluoropyridine and 3-fluoropyridine have been investigated using both Fourier transform microwave (FTMW) and chirped pulse Fourier transform microwave (cp-FTMW) spectroscopies. In addition to the parent species, the spectra of the (13)C and (15)N singly substituted isotopologues were recorded in the 8-23 GHz region in natural abundance. The rotational constants determined for the seven isotopologues of each were used to calculate relevant geometric parameters including the bond distances and angles of the pyridine ring backbone. The derived structures show a more pronounced deviation from the pyridine ring geometry when the fluorine substituent is ortho to nitrogen which is consistent with ab initio predictions at various levels of theory. Analysis of the (14)N hyperfine structure provided an additional source of information about the electronic structure surrounding the nitrogen atom as a function of fluorine substitution. Together, the experimental results are consistent with a bonding model that involves hyperconjugation whereby fluorine donates electron density from its lone pair into the π-system of pyridine.     

Synthesis and characterization of (E)- and (Z)-3-mercapto-2-propenenitrile. Microwave spectrum of the Z-isomer

The kinetically unstable compound 3-mercapto-2-propenenitrile (HS-CH=CH-C[triple bond]N) has been prepared for the first time by flash vacuum pyrolysis at 800 degrees C of 3-(tert-butylthio)-2-propenenitrile with a yield of 77% and a Z:E ratio of 8:1. Several deuterium and 15N isotopologues were also prepared using isotopically enriched compounds. Quantum chemical calculations of the structural and conformational properties of the Z- and E-isomers were undertaken at the B3LYP/6-311++G(3df,2pd), MP2/6-311++G(3df,2pd), MP2/aug-cc-pVTZ, and G3 levels of theory. These methods all predict that the Z- and the E-forms each have two "stable" planar rotameric forms with the H-S-C=C link of atoms in either a synperiplanar or an antiperiplanar conformation, with the synperiplanar form of the Z-isomer as the global minimum. The Z-isomer has been investigated by means of Stark-modulation microwave spectroscopy. Spectra attributable to the parent and three deuterium-substituted isotopologues of a single conformer were recorded and assigned. Additionally, the spectrum belonging to the first excited state of the lowest bending vibration was assigned. The ground-state rotational constants obtained by the least-squares analysis of these transitions were found to be in excellent agreement with the corresponding approximate equilibrium values generated by the MP2/aug-cc-pVTZ calculations. The preferred conformer of this molecule was found to have a synperiplanar arrangement of the H-S-C=C chain of atoms and a planar or nearly planar geometry, with a stabilizing intramolecular hydrogen bond formed between the H atom of the thiol group and pi-electron density associated with the C[triple bond]N triple bond. The possible astrochemical/astrobiological significance of this compound is discussed.     

Microwave spectrum, structure, and quantum chemical studies of a compound of potential astrochemical and astrobiological interest: Z-3-amino-2-propenenitrile

Z-3-Amino-2-propenenitrile, H2NCH=CHCN, a compound of astrochemical and astrobiological interest, has been studied by Stark and Fourier transform microwave spectroscopy along with eight of its isotopologues; the synthesis of five of these are reported. The spectra of the ground vibrational state and of three vibrationally excited states belonging to the two lowest normal modes were assigned for the parent species, whereas the ground states were assigned for the isotopologues. The frequency of the lowest in-plane bending fundamental vibration was determined to be 152(20) cm(-1) and the frequency of the lowest out-of-plane fundamental mode was found to be 176(20) cm(-1) by relative intensity measurements. A delicate problem is whether this compound is planar or slightly nonplanar. It was found that the rotational constants of the nine species cannot be used to conclude definitely whether the molecule is planar or not. The experimental dipole moment is mu(a) = 16.45(12), mu(b) = 2.86(6), mu(c) = 0 (assumed), and mu(tot.) = 16.70(12) x 10(-30) C m [5.01(4) D]. The quadrupole coupling constants of the two nitrogen nuclei are chi(aa) = -1.4917(21) and chi(cc) = 1.5644(24) MHz for the nitrogen atom of the cyano group and chi(aa) = 1.7262(18) and chi(cc) = -4.0591(17) MHz for the nitrogen atom of the amino group. Extensive quantum-chemical calculations have been performed, and the results obtained from these calculations have been compared with the experimental values. The equilibrium structures of vinylamine, vinyl cyanide, and Z-3-amino-2-propenenitrile have been calculated. These calculations have established that the equilibrium structure of the title compound is definitely nonplanar. However, the MP2/VQZ energy difference between the planar and nonplanar forms is small, only -423 J/mol. Z-Amino-2-propenenitrile and E-3-amino-2-propenenitrile are formed simply by mixing ammonia and cyanoacetylene at room temperature. A plausible reaction path has been modeled. G3 calculations indicate that the enthalpy (298.15 K, 1 atm) of the transition state is about 130 kJ/mol higher than the sum of the enthalpies of the reactants ammonia and cyanoacetylene. This energy difference is comparatively high, which indicates that both E- and Z-3-aminopropenenitrile are not likely to be formed in the gas phase in cold interstellar clouds via a collision between ammonia and cyanoacetylene. An alternative reaction between protonated cyanoacetylene (H-C[triple bond]C-C[triple bond]NH+) and ammonia is predicted to have a much lower activation energy than the reaction between the neutral molecules. Although protonated E- and Z-3-aminopropenenitrile in principle may be formed this way, it is more likely that a collision between NH3 and H-C[triple bond]C-C[triple bond]NH+ leads to NH4+ and H-C[triple bond]C-C[triple bond]N.     

C-H···π interactions in the CHBrF2···HCCH weakly bound dimer

The microwave spectra of four isotopologues of the CHBrF(2)···HCCH weakly bound dimer have been measured in the 6-18 GHz region using chirped-pulse and Balle-Flygare Fourier-transform microwave spectroscopy. Spectra of (13)CH(79)BrF(2) and (13)CH(81)BrF(2) monomers have also been measured, and spectroscopic constants are reported. Measurement of spectra for the (79)Br and (81)Br isotopologues of CHBrF(2) complexed with both (12)C(2)H(2) and (13)C(2)H(2) have allowed the determination of a structure with C(s) symmetry for this complex. CHBrF(2) interacts with the triple bond of acetylene via a C-H···π contact (R(H···π) = 2.670(8) ?) with the Br atom lying in the ab plane, located 3.293(40) ? from a hydrogen atom of the HCCH molecule. The structure of CHBrF(2)···HCCH has been compared with recently studied related acetylene complexes, including a comparison with (and further structural analysis of) the CHClF(2)···HCCH complex.     

Monohydrates of cuprous chloride and argentous chloride: H2O⋅⋅⋅CuCl and H2O⋅⋅⋅AgCl characterized by rotational spectroscopy and ab initio calculations

Pure rotational spectra of the ground vibrational states of ten isotopologues of each of H(2)O???CuCl and H(2)O???AgCl have been measured and analyzed to determine rotational constants and hyperfine coupling constants for each molecule. The molecular structure and spectroscopic parameters determined from the experimental data are presented alongside the results of calculations at the CCSD(T) level. Both experiment and theory are consistent with structures that are nonplanar at equilibrium. The heavy atoms are collinear while the local C(2) axis of the water molecule intersects the axis defined by the heavy atoms at an angle, φ = 40.9(13)° for Cu and φ = 37.4(16)° for Ag. In the zero-point state, each molecule is effectively planar, undergoing rapid inversion between two equivalent structures where φ has equal magnitude but opposite sign. The equilibrium geometry has C(s) symmetry, however. The ab initio calculations confirm that the timescale of this inversion is at least an order of magnitude faster than that of rotation of the molecule in the lowest rotational energy levels. The molecular geometries are rationalized using simple rules that invoke the electrostatic interactions within the complexes. Centrifugal distortion constants, Δ(J) and Δ(JK), nuclear quadrupole coupling constants, χ(aa)(Cu), χ(aa)(Cl), (χ(bb) - χ(cc))(Cu), and (χ(bb) - χ(cc))(Cl), and the nuclear spin-rotation constant of the copper atom, C(bb)(Cu)+C(cc)(Cu), are also presented.     

On the weak O-H···halogen hydrogen bond: a rotational study of CH3CHClF···H2O

We measured the molecular beam Fourier transform microwave spectra of six isotopologues of the 1?:?1 adduct of CH(3)CHClF with water. Water prefers to form an O-H···F rather than an O-H···Cl hydrogen bond. This is just the contrary of what was observed in the chlorofluoromethane-water adduct, where an O-H···Cl link was formed (W. Caminati, S. Melandri, A. Maris and P. Ottaviani, Angew. Chem., Int. Ed., 2006, 45, 2438). The water molecule is linked with an O-H···F bridge to the fluorine atom, with r(F···H(w)) = 2.14 ?, and with two C-H···O contacts to the alkyl hydrogens with r(C(1)-H(1)···O(w)) = 2.75 ? and r(C(2)-H(2)···O(w)) = 2.84 ?, respectively. Besides the rotational constants, the quadrupole coupling constants of the chlorine atom have been determined. In addition, information on the internal dynamics has been obtained.