Coordination dimers constructed from metal(II) halides and the organic ligand 1,2-dimethoxy- 4,5-bis(2-pyridylethynyl)benzene

A series of new coordination compounds has been synthesized using the organic ligand 1,2-dimethoxy-4,5-bis(2-pyridylethynyl)benzene (dmpeb). The compounds all form dimers consisting of two metal cations bridged by two ligand molecules. Charge balance is provided by halide ligands, and the four-coordinate metal centers are distorted from the ideal tetrahedral environment. [CoCl₂(dmpeb)]₂ (1) crystallizes in the monoclinic space group P2₁/n with a = 8.5272(6) Å, b = 18.3653(13) Å, c = 13.3493(9) Å, β = 103.574(2)^°, V = 2032.2(2) ų, Z = 2. [ZnCl₂(dmpeb)]₂ (2) is isostructural to 1 and has the cell parameters a = 8.5495(4) Å, b = 18.4049(8) Å, c = 13.3692(6) Å, β = 103.4460(10)^°, V = 2046.01(16) ų, Z = 2. [ZnBr₂(dmpeb)]₂ (3) is also isostructural to 1 with a = 8.7882(5) Å, b = 18.7260(12) Å, c = 13.3857(8) Å, β = 102.5990(10)^°, V = 2149.8(2) ų, Z = 2. Additionally, the compounds [ZnI₂(dmpeb)]₂ (4, cell parameters: a = 8.9650(5) Å, b = 19.1251(10) Å, c = 13.4160(7) Å, β = 101.1660(10)^°, V = 2256.7(2) ų, Z = 2), [HgCl₂(dmpeb)]₂ (5, cell parameters: a = 8.8457(7) Å, b = 18.4030(15) Å, c = 13.3711(11) Å, β = 104.246(2)^°, V = 2109.7(3) ų, Z = 2), and [HgBr₂(dmpeb)]₂ (6, cell parameters: a = 9.0576(5) Å, b = 18.8634(11) Å, c = 13.4535(8) Å, β = 102.9780(10)^°, V = 2239.9(2) ų, Z = 2) are also isostructural to 1. A seventh dimeric compound, [HgI₂(dmpeb)]₂, not isostructural to the others was also characterized by X-ray crystallography. [HgI₂(dmpeb)]₂ (7) crystallizes in the triclinic space group P-1 with a = 8.8028(5) Å, b = 12.0990(7) Å, c = 12.4082(7) Å, α = 109.7240(10)^°, β = 107.3680(10)^°, γ = 93.0880(10)^°, V = 1169.57(12) ų, Z = 1.     

Crystal structure of 2,4,6-trinitropyridine and its N-oxide

The structures of 2,4,6-trinitropyridine (TNPy) and its N-oxide were determined by X-ray single crystal diffraction. TNPy and 2,4,6-trinitropyridine-1-oxide (TNPyO) crystallize in space groupPbcn andPnma, respectively. The crystallographic parameters are as follows: TNPy,a = 28.573(6) Å,b = 9.7394(19) Å, andc = 8.7566(18) Å, α = β = γ = 90^°, μ = 0.164 mm^?1,V = 2436.8(8) ų,z = 12,Dx = 1.751 mg/mm³,F(000) = 1296,T = 293(2) K, 1.43^°≤ θ≤ 27.40^°, the finalR factor:R ₁ = 0.0574,wR ₂ = 0.1337. TNPyO,a = 9.6272(19) Å,b = 14.128(3) Å, andc = 5.9943(12) Å, α = β = γ = 90^°, μ = 0.179 mm^?1,V = 815.3(3)ų,z = 4,Dx = 1.875 mg/mm³,F(000) = 464,T = 293(2) K, 2.88^°≤ θ≤ 27.44^°, the finalR factor:R ₁ = 0.0497,wR ₂ = 0.1515.     

Design of peptides with α,β-dehydro-residues: Synthesis and crystal structure of a tetrapeptide Boc-Ala-ΔPhe-ΔPhe-Phe-OCH<Subscript>3</Subscript>

In order to develop general rules of peptide design with α,β-dehydro-residues, a peptide, Boc-Ala-ΔPhe-ΔPhe-Phe-OCH₃, was synthesized. The peptide was crystallized from its solution in an acetone:water mixture (70:30). The crystals belong to orthorhombic space group P2₁2₁2₁ with a = 9.403(1) Å, b = 16.871(1) Å, c = 21.638(1) Å, and Z = 4. The peptide adopts a conformation with two overlapping types II′ and III β-turns having dihedral angles, φ₁ = 53.7(6)^°, ψ₁ = ?135.9(4)^°, φ₂ = ?59.2(5)^°, ψ₂ = ?17.9(5)^°, φ₃ = ?68.4(5)^°, ψ₃ = ?18.8(6)^°. The conformation was further characterized by two intramolecular 4 → 1 hydrogen bonds involving imino nitrogen atoms of ΔPhe³ and Phe⁴ as donors and carbonyl oxygen atoms of blocking group Boc and Ala¹ as acceptors. The packing of the molecules in the unit cell is stabilized by an intermolecular hydrogen bond, N₂–H₂?s O′₃ [?x, y+1/2, ?z+1/2] = 2.894 Å and van der Waals forces involving aromatic side chains.     

Synthesis and structures of thienyl-substituted 5-dipyrromethane isomers

The compounds 5(2-thienyl)-and 5(3-thienyl)-dipyrromethane (1 and2, respectively) have been synthesized and isolated from the acid-catalyzed reaction between thiophenes-carboxaldehyde and pyrrole. Characterization by X-ray diffraction confirms molecular structures involving twoortho-substituted pyrrolyl and one thienyl groups. Both the compounds1 and2 were crystallized in the monoclinic space groupP2₁/n with cell parametersa = 5.7149(16) Å,b = 17.338(6) Å, andc = 11.785(4) Å, β = 98.466(9)^°,V = 1155.0(6) ų for compound1; anda = 5.828(4) Å,b = 17.424(10) Å,c = 11.822(8) Å, β = 98.10(2)^°, andV = 1188.4(13) ų for compound2.     

First example of lanthanide coordination polymer of 2,5-pyrazinedicarboxylate

A lanthanum coordination polymer, [La(2,5-PZDC)_1.5(H₂O)] _n , (2,5-PZDC = 2,5-pyrazinedicarboxylate) has been synthesized by using the reaction of LaCl₃?7H₂O with 2,5-pyrazinedicarboxylic acid under hydrothermal condition and structurally characterized by X-ray diffraction method. It crystallizes in the triclinic system P \(\bar 1\) with a = 6.297(2) Å, b = 6.762(2) Å, c = 13.450(4) Å, α = 82.984(5)^°, β = 83.164(5)^°, γ = 63.260(4)^°, V = 506.3(3) ų, Z = 2. The La³⁺ ion is nine-coordinate in a N₂O₇ environment, with a tricapped trigonal prism geometry, and the ligand 2,5-pyrazinedicarboxylate adopts two coordination modes, through which lanthanum ions are linked together to form a three-dimensional structure.     

Synthesis and characterization of 9-(4-nitrophenyl)3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione and its methoxyphenyl derivative

9-(4-Nitrophenyl)-3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione (NTHA) crystallizes in orthorhombic space group P2₁2₁2₁ with a = 5.9716(1) Å, b = 18.0476(3) Å, c = 19.2445(2) Å, V = 2074.04(5) ų, Z = 4, D_cal = 1.263 Mg m^?3 and R = 0.0521 (wR = 0.1326) for 4078 observed reflections. 9-(4-Nitrophenyl)-10-(4-methoxyphenyl)-3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione NMTHA, crystallizes in monoclinic space group P2₁/c with a = 15.669(5) Å, b = 10.652(4) Å, c = 18.337(6) Å, β = 108.25(1)^°, V = 2906.66(2) ų, Z = 4, D_cal = 1.245 Mg m^?3 and R = 0.0725 (wR = 0.1847) for 5105 observed reflections. The experimental values are compared with the theoretical values calculated based on the semiemperical methods. The structures are stabilized by N–H?sO and C–H?sO types of intermolecular interactions in addition to van der Waals forces.     

Synthesis and crystal structure of 2-acetylnaphthalen-6-yl 4-methylbenzosulfonate

The title compound has been synthesized by the reaction of 1-(6-hydroxy-2-naphthyl)-1-ethanone (2) with p-toluenesulfonyl chloride. Its structure was determined by single crystal X-ray diffraction. 2-Acetylnaphthalen-6-yl 4-methylbenzosulfonate (3) crystallizes in the orthorhombic space group Pbca with a = 12.727(3) Å, b = 14.560 (3) Å, c = 17.688 (4) Å, V = 3277.8 (11) ų, and Z = 8. The results demonstrate that the dihedral angle between the benzene ring and the naphthalene ring is 116.5^°, and the length (1.417 Å) of single C–O bond of 3 is longer than that of single C–O bond in the relative compounds.     

Synthesis and crystal structure of binuclear molecule Ho<Subscript>2</Subscript>(2-FC<Subscript>6</Subscript>H<Subscript>4</Subscript>COO)<Subscript>6</Subscript>⋅4H<Subscript>2</Subscript>O

The complex Ho₂(2-FC₆H₄COO)₆?4H₂O has been synthesized and structurally characterized by single crystal X-ray diffraction methods. The complex crystallizes in the triclinic system with space group P \(\bar 1\), lattice parameters a = 9.293(8) Å, b = 9.845(8) Å, c = 12.703(11) Å, α = 85.470(14)^°, β = 87.537(12)^°, γ = 62.485(11)^°, V = 1027.5(15) ų, Z = 1, D_calc = 1.998 Mg/m³. The Ho³⁺ ion is in distorted monocapped square-antiprism coordination environment and is coordinated by nine oxygen atoms, seven from five 2-FC₆H₄COO^2? groups, two from two water molecules. Two Ho³⁺ ions are linked together by four bridging carboxylate groups to form a binuclear molecule with inversion center.     

Synthesis and structure of a terephthalato-bridged nickel complex [Ni(tpt)(imi)<Subscript>3</Subscript>(H<Subscript>2</Subscript>O)]<Emphasis Type="Italic">n</Emphasis>

At room temperature, a new coordination polymer [Ni(tpt)(imi)₃(H₂O)]n was synthesized by the reaction of NiCl₂?6H₂O, terephthalic acid, and imidazole in aqueous solution. The structure was determined by X-ray crystallography. It crystallizes in monoclinicP2₁/n space group with the crystal cell parameters ofa = 9.8626(4) Å,b = 15.2498(3) Å, andc = 12.7681(3)Å, β = 90.309(2)^°,V = 1920.33(10) ų, andZ = 4. The crystal X-ray analysis shows that each nickel atom is coordinated by three imidazole ligands, two terephthalate ions, and one water molecule. Each terephthalate ion bridges two nickel atoms to form a zigzag chain. The chains are further linked together via hydrogen bonds to a three-dimensional network.     

Synthesis and characterization of a lead(II) complex [Pb(phen)(H<Subscript>2</Subscript>O)(NO<Subscript>3</Subscript>)<Subscript>2</Subscript>] (phen = 1,10-phenanthroline)

The monomeric lead(II) complex, [Pb(phen)(H₂O)(NO₃)₂] was prepared by a hydrothermal reaction of Pb(NO₃)₂, nitrilotriacetic acid, NaOH, 1,10-phenanthroline, and H₂O. The structure was determined by X-ray crystallography. It crystallizes in monoclinic P2(1)/n space group with the crystal cell parameters of a = 6.3568(6), b = 20.2345(19), c = 11.2722(9) Å, β = 98.337(4)^°, V = 1434.6(2) ų, and Z = 4. The crystal X-ray analysis shows that the lead atom is six-coordinated by two N atoms of phen ligand, three oxygen atoms of nitrate anions and one water molecule. Owing to the presence of a lone pair of electrons of lead atom, a significant gap occurs in the coordination geometry around Pb ion. A 3D architecture is formed through the strong hydrogen bonding and π–π stacking interactions.     

The first crystal structure of a Meisenheimer complex with organic cation

The structure of the Meisenheimer complex 2′,4′,6′-trinitro-3′,5′-dihydrospiro(1,3-dioxolane-2,8′-cyclohexadienide) C₈H₆N₃O₈(?) 1^? with tetra-n-butyl-ammonium C₁₆H₃₆ N(+) has been determined by X-ray crystallography. The compound 1 crystallizes in the space group P2₁ with two molecules (Z′ = 2) in the asymmetric unit. The unit cell parameters are a = 8.728(3) Å, b = 13.760(4) Å, c = 22.882(7) Å, β = 96.17(3)^°. Interactions between the Meisenheimer complex and organic cation in 1 involve only a number of weak to moderate C–H?sO bonds. Thus, it has been concluded that the structure 1 represents the geometry of the Meisenheimer complex minimally influenced by the cation. Comparison the structure 1 and the compound 2 (1^? K⁺?H₂O) studied previously reveals an interesting structural effect attributed to coordination of potassium cations with the nitro groups of 1^?. It leads to notable shortening of the C–N bond lengths of the nitro groups only, while changes of other bond lengths in the Meisenheimer complex are not significant.     

Growth and crystal structure of binary molybdate CsFe(MoO<Subscript>4</Subscript>)<Subscript>2</Subscript>

CsFe(MoO₄)₂ single crystals have been grown by solution-melt crystallization with a charge-to-solvent ratio of 1: 3 (with Cs₂Mo₃O₁₀ used as a solvent). The crystal structure of this compound has been refined by X-ray diffraction (X8 APEX automatic diffractometer, MoK _α radiation, 356 F(hkl), R = 0.0178). The trigonal unit cell has the following parameters: a = b = 5.6051(2) Å, c = 8.0118(4) Å, V = 217.985(15) ų, Z = 1, ρ_calc = 3.875 g/cm³, and sp. gr. P \(\bar 3\) m1. The structure is composed of alternating layers of FeO₆ octahedra (with MoO₄ tetrahedra attached by sharing vertices) and CsO₁₂ icosahedra.     

3,4,5-Triethoxybenzoic acid benzene solvate: An example of hydrogen-bonded carboxylic acid dimer

Crystals of 3,4,5-triethoxybenzoic acid benzene solvate, 3,4,5-(C₂H₅O)₃C₆H₂COOH? 0.25C₆H₆, are monoclinic, space group P2/c, with the cell dimensions at 100 K: a = 18.729(3), b = 10.6475(17), c = 14.390(2) Å, β = 98.410(2)^°, V = 2838.7(8) ų, and Z = 8, Z′ = 2. In the crystal structure two symmetrically independent molecules of 3,4,5-triethoxybenzoic acid form a planar dimer by two O–H?sO hydrogen bonds.     

Synthesis,Crystal Structure,Electrochemical Properties,and Biological Activity of 2-((1H-Benzimidazol-2-yl)methylamino)acetic Acid

A water soluble compound, (2-((1H-benzimidazol-2-yl)methylamino)acetic acid, BIGH, has been synthesized and structurally characterized by elemental analysis, IR and UV spectroscopies, ¹H-NMR, thermogravimetric and differential thermal analyses, and single crystal and powder X-ray diffraction. BIGH can act as a flexible planar ligand with three potential coordination sites. It crystallizes in a monoclinic system with the sp. gr. P2₁/c with the unit cell parameters, a = 9.3764(7) Å, b = 11.5031(8) Å, c = 10.0543(6) Å, and Z = 4. The crystal structure was stabilized through inter-molecular hydrogen bonds. The anti-microbial activity of the compound has been studied against Escherichia coli, Bacillus subtilis, Pseudomonas aeruginosa, and Staphylococcus aureus, which showed a good activity against Bacillus subtilis. Cyclic voltammogram of the compound shows that it is a redox-active molecule.     

The synthesis and crystal structure of (4<Emphasis Type="Italic">E</Emphasis>)-5(3-chlorophenyl)-<Emphasis Type="Italic">N</Emphasis>-(4-chlorophenyl)-2-diazo3-oxopent-4-enoic acid amide

(4E)-5-(3-Chlorophenyl)-N-(4-chlorophenyl)-2-diazo-3-oxopent-4-enoic acid amide (5) was synthesized from p-chloroaniline to N-(4-chlorophenyl)-2-diazo-3-oxo-butyramide (4) with 3-chlorobenzaldehyde. The yielded product 5 was investigated with X-ray crystallographic, NMR, MS, and IR techniques. Compound 5 (C₁₇H₁₁Cl₂N₃O₂, Formula wt = 360.19), crystallizes in the monoclinic space group P21/c with unit cell parameters a = 10.516(2), b = 17.996(4), c = 8.902(2) Å, α = 90.00, β = 105.36(3), γ = 90.00^°. V = 1624.5(6) ų, Z = 4, D _x = 1.473 Mg m^?3. The final R was 0.0511.     

X-ray crystal structures of two polymorphic forms,monoclinic and triclinic,of: 1-[(<Emphasis Type="Italic">E</Emphasis>)-2-(4-bromophenyl)1-diazenyl]-3-({3-[(<Emphasis Type="Italic">E</Emphasis>)-2-(4-bromophenyl)-1-diazenyl]-6-ethylhexahydro-1-pyrimidinyl}methyl)-4-ethylhexahydropyrimidine

1-[(E)-2-(4-bromophenyl)-1-diazenyl]-3-({3-[(E)-2-(4-bromophenyl)-1-diazenyl]-6-ethylhexahydro-1-pyrimidinyl}methyl)-4-ethylhexahydropyrimidine (1) has been synthesized by reaction of a mixture of formaldehyde and 1,3-pentanediamine{DYTEK^®EPdiamine} with p-bromobenzenediazonium chloride. This compound crystallizes in two polymorphic forms 1-α and 1-β whose crystal structures have been determined by single crystal X-ray diffraction analysis. Both polymorphs 1-α and 1-β display crystallographic disorder within the hexahydropyrimidine rings. The molecule of 1 is built up of two equivalent 3-(aryldiazenyl)-6-ethylhexahydro-1-pyrimidinyl groups in the s-trans orientation around the central methylene group (C13). In both structures the triazene moieties adopt the anti configuration around the N=N bonds, displaying significant π-conjugation. The crystal packings are determined only by van der Waals interactions. The crystal structures of 1-α and 1-β are compared with the previously reported structure of the 5,5-dimethylhexahydropyrimidine analogue 3. Compounds 1 and 3 are isomeric with respect to the hexahydropyrimidine moiety. The structures of 1 and 3 are very different in one respect; in 1 the aryldiazenyl-hexahydropyrimidinyl groups are in the s-trans orientation around the central methylene group, whereas in 3 the arrangement of the aryldiazenylhexahydropyrimidinyl groups is the s-cis orientation. Crystal data: 1-α C₂₅H₃₄N₈Br₂, monoclinic, space group P2(1)/c, a = 9.2150(3), b = 19.4059(6), c = 15.4324(5) Å, β = 98.738(1)^°, V = 2727.7(2) ų, for Z = 4; 1-β C₂₅H₃₄N₈Br₂, triclinic, space group P-1, a = 9.6009(3), b = 10.7509(4), c = 14.2169(5) Å, α = 99.830(2), β = 105.973(3), γ = 95.578(1)^°, V = 1373.9(1) ų, for Z = 2.     

X-ray mapping in heterocyclic design: XIV. Tricyclic heterocycles based on 2-Oxo-1,2,5,6,7,8-hexahydroquinoline-3-carbonitrile

The structures of four compounds are studied using single-crystal X-ray diffraction: 1-[2-(4-chlorophenyl)-2-oxoethyl]-2-oxo-1,2,5,6,7,8-hexahydroquinoline-3-carbonitrile [a = 4.908(4) Å, b = 11.644(10) Å, c = 13.587(2) Å, β = 94.31(5)°, Z = 2, space group P2₁]; 2-[2-(4-chlorophenyl)-2-oxoethoxy]-5,6,7,8-tetrahydroquinoline-3-carbonitrile [a = 7.6142(8) Å, b = 14.778(2) Å, c = 14.132(2) Å, β = 100.38(1)°, Z = 4, space group P2₁/c]; 4-(aminocarbonyl)-2-(chlorophenyl)-6,7,8,9-tetrahydro[1.3]oxazolo[3,2-a]quinolin-3-ium per-chlorate [a = 5.589(7) Å, b = 24.724(15) Å, c = 13.727(5) Å, β = 97.66(9)°, Z = 4, space group P2₁/n]; and (3-amino-5,6,7,8-tetrahydrofuro[2,3-b]quinolin-2-yl)-(4-chlorophenyl) methanone [a = 7.150(2) Å, b = 7.4288(10) Å, c = 15.314(3) Å, α = 98.030(10)°, β = 99.21(2)°, γ = 105.34(2)°, Z = 2, space group \(P\bar 1\)]. The structures are solved by direct methods and refined by the full-matrix least-squares procedure in the anisotropic approximation to R = 0.0728, 0.0439, 0.1228, and 0.0541, respectively. The structure of 1-(4-chlorophenyl)-4-piperidin-1-yl-8,9-dihydro-7H-pyrrolo[3.2.1-ij]quinoline-5-carboxamide [a = 23.9895(9) Å, b = 5.1557(3) Å, c = 17.0959(9) Å, β = 106.43°, Z = 4, space group P ₁/c] is investigated by X-ray powder diffraction. This structure is solved using the grid search procedure and refined by the Rietveld method to R _wp = 0.0773, R _exp = 0.0540, R _p = 0.0585, R _b = 0.1107, and χ ² = 1.78.     

Crystal structure analysis of 4-phenylquinolin-2-(1<Emphasis Type="Italic">H</Emphasis>)-one

The crystal structure of 4-phenylquinolin-2-(1H)-one (C₁₅H₁₁NO) is determined by X-ray diffraction. The compound crystallizes in the orthorhombic crystal system (space group Pbca) with the unit cell parameters a = 7.382(2) Å, b = 21.795(3) Å, c = 14.066(5) Å, and Z = 8. The structure is solved by direct methods and refined to an R-value of 0.0398 for 1360 observed reflections [F₀ > 4σ (F₀)]. The quinoline moiety and the substituted phenyl ring are nearly planar. The dihedral angle between these two moieties is 64.65(6)°. The crystal structure is stabilized by two intermolecular N-H?O and C-H?O interactions.     

Crystal structure,physical properties and Pt-195 NMR characterization of Pt(bipy)Br

The complex dibromobipyridylplatinum(II), Pt(bipy)Br₂, crystallizes in the monoclinic space groupC2/c witha = 17.262(5) Å,b = 9.388(2) Å,c = 7.557(2) Å, β = 113.47(2)^°, andZ = 4. The complex is isomorphous to the monomeric copper derivative, Cu(bipy)Br₂. The¹⁹⁵Pt NMR spectrum shows the typical line broadening effect caused by coordinated nitrogen-14. The complex resonates at ?1897 ppm with a half-height peak width of 1300 Hz. The structure is compared with the analogous structures Pt(bipy)(X)₂ (X = Cl and I) and Pd(bipy)Br₂.     

Synthesis and an X-ray diffraction study of Rb<Subscript>2</Subscript>[(UO<Subscript>2</Subscript>)<Subscript>2</Subscript>(C<Subscript>2</Subscript>O<Subscript>4</Subscript>)<Subscript>3</Subscript>]

The synthesis and X-ray diffraction study of compound Rb₂[(UO₂)₂(C₂O₄)₃], which crystallizes in the monoclinic crystal system, are performed. The unit cell parameters are as follows: a = 7.9996(6) Å, b = 8.8259(8) Å, c = 11.3220(7) Å, β = 105.394(2)°, and V = 770.7(1) ų; space group P2₁/n, Z = 2, and R ₁ = 0.0271. [(UO₂)₂(C₂O₄)₃]^2? layers belonging to the AK _0.5 ⁰² T ¹¹ crystal chemical group of uranyl complexes (A = UO ₂ ²⁺ , K ⁰² = C₂O ₄ ^2? , and T ¹¹ = C₂O ₄ ^2? ) are uranium-containing structural units of the crystals. The layers are connected with outer-sphere rubidium cations by electrostatic interactions.