Bioimaging of cells and tissues using accelerator-based sources

A variety of techniques exist that provide chemical information in the form of a spatially resolved image: electron microprobe analysis, nuclear microprobe analysis, synchrotron radiation microprobe analysis, secondary ion mass spectrometry, and confocal fluorescence microscopy. Linear (LINAC) and circular (synchrotrons) particle accelerators have been constructed worldwide to provide to the scientific community unprecedented analytical performances. Now, these facilities match at least one of the three analytical features required for the biological field: (1) a sufficient spatial resolution for single cell (< 1 μm) or tissue (<1 mm) analyses, (2) a temporal resolution to follow molecular dynamics, and (3) a sensitivity in the micromolar to nanomolar range, thus allowing true investigations on biological dynamics. Third-generation synchrotrons now offer the opportunity of bioanalytical measurements at nanometer resolutions with incredible sensitivity. Linear accelerators are more specialized in their physical features but may exceed synchrotron performances. All these techniques have become irreplaceable tools for developing knowledge in biology. This review highlights the pros and cons of the most popular techniques that have been implemented on accelerator-based sources to address analytical issues on biological specimens. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Analysis of biosensors by chemically specific optical techniques. Chemiluminescence-imaging and infrared spectroscopic mapping ellipsometry

The standard methods currently used to read out microarrays are fluorescent and chemiluminesent imaging techniques. These methods require labeling of a component with a marker and, usually, only the concentration of the marker molecule is detected. A label-free imaging method that also enables quantitative spectroscopic analysis of the composition and component interaction would be of great advantage. In this article it is shown for the first time that IR mapping ellipsometry enables label-free imaging of a biochip before and after incubation with peptide solution. The measurements prove that IR ellipsometry is a sensitive tool for laterally resolved identification of the different materials and determination of the composition of a biochip. The lateral resolution required was achieved by using radiation from an infrared synchrotron beamline.      

Comparison of detection limits, for two metallic matrices, of laser-induced breakdown spectroscopy in the single and double-pulse configurations

Limits of detection have been studied for several elements in aluminium and steel alloys, at atmospheric pressure in air, by use of the single and collinear double-pulse configurations of laser-induced breakdown spectroscopy. For this purpose, calibration plots were constructed for Mg, Al, Si, Ti, Cr, Mn, Fe, Ni, and Cu using a set of certified aluminium alloy samples and a set of certified steel samples. The investigation included optimization of the experimental conditions to furnish the best signal-to-noise ratio. Inter-pulse delay, gate width, and acquisition delay were studied. The detection limits for the elements of interest were calculated under the optimum conditions for the double-pulse configuration and compared with those obtained under the optimum conditions for single-pulse configuration. Significantly improved detection limits were achieved, for all the elements investigated, and in both aluminium and steel, by use of the double-pulse configuration. The experimental findings are discussed in terms of the measured plasma conditions (particle and electron density, and temperature).     

Photoacoustic spectroscopy of condensed matter.

Photoacoustic spectroscopy is a new analytical tool that provides a simple nondestructive technique for obtaining information about the electronic absorption sprctrum of samples such as powders, semisolids, gels, and liquids. It can also be applied to samples which cannot be examined by conventional optical methods. Numerous applications of this technique in the field of inorganic and organic semiconductors, biology, and catalysis have been described. Among the advantages of photoacoustic spectroscopy, the signal is almost insensitive to light scattering by the sample and information can be obtained about nonradiative deactivation processes. Signal saturation, which can modify the intensity of individual absorption bands in special cases, is a drawback of the method.     

Optical properties of molecular aggregates of oxazine dyes in dispersions of clay minerals

The molecular aggregation of oxazine 1 (Ox1) and oxazine 4 (Ox4) in reduced charge montmorillonite (RCM) colloids was investigated by absorption and fluorescence spectroscopies. The aggregation was significantly influenced by the structure of dye cations. Presence of four hydrophobic ethyl groups attached to the ammonium substituents in Ox1 cation prevented formation of closely packed sandwich-type assemblies (H-aggregates). Significant effect of the layer charge was observed for Ox4/RCMs dispersions. Large amounts of the Ox4 H-aggregates were formed in the systems with RCMs of the highest layer charge and reflected in quenched fluorescence. The presence of J-aggregates was proven by absorption spectra for the systems with Ox4 and low-charge RCMs. The flocculation of the lowest charge RCM colloids led to an extensive reduction of the luminescence. The trends and effects of the dye molecular structure and RCM properties are compared with the results previously published for other types of dyes.     

Online UV–visible spectroscopy and multivariate curve resolution as powerful tool for model-free investigation of laccase-catalysed oxidation

The laccase-catalysed transformation of indigo carmine (IC) with and without a redox active mediator was studied using online UV–visible spectroscopy. Deconvolution of the mixture spectra obtained during the reaction was performed on a model-free basis using multivariate curve resolution (MCR). Thereby, the time courses of educts, products, and reaction intermediates involved in the transformation were reconstructed without prior mechanistic assumptions. Furthermore, the spectral signature of a reactive intermediate which could not have been detected by a classical hard-modelling approach was extracted from the chemometric analysis. The findings suggest that the combined use of UV–visible spectroscopy and MCR may lead to unexpectedly deep mechanistic evidence otherwise buried in the experimental data. Thus, although rather an unspecific method, UV–visible spectroscopy can prove useful in the monitoring of chemical reactions when combined with MCR. This offers a wide range of chemists a cheap and readily available, highly sensitive tool for chemical reaction online monitoring.     

Multicomponent analyses of chiral samples by use of regression analysis of UV–visible spectra of cyclodextrin guest–host complexes

We report the first combined use of analytical spectroscopy, guest–host chemistry, and multivariate regression analysis for determination of enantiometric composition of multicomponent samples of chiral analytes. Sample solutions containing multicomponent analytes of ephedrine, tryptophan, propranolol, and proline of varying enantiomeric composition with beta-cyclodextrin (BCD) or methyl-beta-cyclodextrin (Me-BCD) as chiral host molecules were investigated using ultraviolet (UV)–visible spectroscopy. The interactions of enantiomers of chiral analytes with chiral hosts resulted in the formation of transient diastereomeric inclusion complexes with varying spectral properties. Multivariate analysis using partial-least-square (PLS) regression was used to correlate subtle changes in the UV–visible spectra of the guest–host complexes with the enantiomeric composition of the calibration samples. These PLS regressions were carefully optimized and then used to predict the enantiomeric composition of multicomponent chiral analytes of validation samples. The results of these validation studies demonstrate the predictive ability of the regression models for determination of future enantiomeric composition of samples. The accuracy of the models to correctly predict the enantiomeric composition of samples, evaluated by use of the root mean square percent relative error (RMS%RE) was analyte and chiral host dependent. In general, better prediction of enantiomeric composition of samples and low RMS%RE values were obtained when Me-BCD was used as the chiral host. The analyses procedure reported here is simple, rapid, and inexpensive. In addition, this approach does not require prior separation of chiral analytes, thus reducing analysis time and eliminating the need for expensive chiral columns.     

Inhibition of J-aggregation of <Emphasis Type="Italic">meso</Emphasis>-tetra(4-sulfonatophenyl)porphyrin by an ionic liquid with π-conjugated character

Abstract  UV–visible spectral observations indicate that the J-aggregation of protonated meso-tetra(4-sulfonatophenyl)porphyrin ([H₂TSPP]²⁺) under acidic conditions is completely inhibited by the π–π counteraction between 1-butyl-pyridinium tetrafluoroborate ([bpy]BF₄) and [H₂TSPP]²⁺. The studies also suggest that the intermolecular π–π force is of relative importance for the J-aggregates of [H₂TSPP]²⁺ and the intermolecular electrostatic force for the H-aggregates. Graphical Abstract        

Analysis of mitochondria isolated from single cells

Bulk studies are not suitable to describe and study cell-to-cell variation, which is of high importance in biological processes such as embryogenesis, tissue differentiation, and disease. Previously, capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) was used to measure the properties of organelles isolated from millions of cells. As such, these bulk measurements reported average properties for the organelles of cell populations. Similar measurements for organelles released from single cells would be highly relevant to describe the subcellular variations among cells. Toward this goal, here we introduce an approach to analyze the mitochondria released from single mammalian cells. Osteosarcoma 143B cells are labeled with either the fluorescent mitochondrion-specific 10-N-nonyl acridine orange (NAO) or via expression of the fluorescent protein DsRed2. Subsequently, a single cell is introduced into the CE-LIF capillary where the organelles are released by a combined treatment of digitonin and trypsin. After this treatment, an electric field is applied and the released organelles electromigrate toward the LIF detector. From an electropherogram, the number of detected events per cell, their individual electrophoretic mobilities, and their individual fluorescence intensities are calculated. The results obtained from DsRed2 labeling, which is retained in intact mitochondria, and NAO labeling, which labels all mitochondria, are the basis for discussion of the strengths and limitations of this single-cell approach. Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users     

Kinetic determination of the GTPase activity of Ras proteins by means of a luminescent terbium complex

Guanine nucleotide binding proteins, such as Ras proteins, play a pivotal role in maintaining the regular life cycle of cells. The involvement of Ras mutants in the progress of cancer has attracted many efforts to find detection methods for Ras activity. In this study we present a luminescent microwell plate assay for monitoring GTPase activity of Ras proteins. The luminescence intensity of the Tb–norfloxacin complex is influenced by nucleoside phosphates as well as by inorganic phosphates. Real-time kinetics of the GTPase activity of wild-type Ras and Ras mutants can be monitored online. The effect of a GTPase activating protein as well as of a downstream effector (Ras-binding domain of human Raf-1) on the GTPase activity of different Ras mutants is examined. In contrast to other methods, this assay does not require the use of radioactively labeled substrates or chromatographic separation steps. Moreover, the application of fluorescently labeled GTP substrates which often interfere with enzymatic activity can be avoided. This in vitro assay can serve as a model system for the screening of regulators affecting the GTPase activity of Ras proteins. Figure The emission of the lanthanide complex Tb(III)-norfloxacin is influenced by nucleoside phosphates as well as by inorganic phosphates. Ras proteins display a specific GTPase activity which converts protein-bound GTP to GDP and phosphate, the latter being released. The Ras activity can be monitored by a significant decrease in luminescence intensity of Tb(III)-norfloxacin owing to the strong quenching effect induced by the enzymatically hydrolyzed phosphate anions. This luminescent assay enables the monitoring of real-time kinetics of the GTPase activity of Ras proteins and Ras mutants and a fast screening of their regulators.     

Determination of immunomodulatory effects: focus on functional analysis of phagocytes as representatives of the innate immune system

The evaluation of the effects of drugs or chemicals on the functions of the immune system is an increasingly important task. Due to the accessibility of primary cells and cell lines, in vitro cellular functional tests are frequently being performed with cells representing the innate immune system, in particular those with phagocytotic activities, such as neutrophils and macrophages. Suitable functional parameters are the efficiency of phagocytosis, the efficiency with which viable pathogens are killed, the production of reactive oxygen and nitrogen species (ROS and RNS) and that of cytokines. Corresponding analytical procedures are available, but standardization is required, as varying the procedure may influence the outcomes of the assays.     

Tip-enhanced Raman spectroscopy for nanoscale strain characterization

Tip-enhanced Raman spectroscopy (TERS), which utilizes the strong localized optical field generated at the apex of a metallic tip when illuminated, has been shown to successfully probe the vibrational spectrum of today’s and tomorrow’s state-of-the-art silicon and next-generation semiconductor devices, such as quantum dots. Collecting and analyzing the vibrational spectrum not only aids in material identification but also provides insight into strain distributions in semiconductors. Here, the potential of TERS for nanoscale characterization of strain in silicon devices is reviewed. Emphasis will be placed on the key challenges of obtaining spectroscopic images of strain in actual strained silicon devices. Figure Figure Concept of Tip Enhanced Raman Spectroscopy (TERS), which utilizes the strong localized optical field generated at the apex of a metallic tip when illuminated. TERS has been demonstrated to successfully probe the vibrational spectrum of today’s and tomorrow’s state-of-the-art silicon and next generation semiconductor devices     

Laser spectroscopy in analytical chemistry:light on the next millennium

To date, lasers are widely accepted tools in analytical spectroscopy, involved in various stand-alone and hyphenated techniques. Furthermore, significant progress can be noted in this field. In this paper, first of all some laser characteristics are discussed. Subsequently, five selected topics are outlined to illustrate recent achievements and future developments:

1. Laser-induced fluorescence for detection in capillary electrophoresis, including the use of ultraviolet, continuous-wave lasers in combination with wavelength-resolved emission detection; the use of diode laser-induced fluorescence in the red region of the electromagnetic spectrum and the use of Ti:sapphire lasers for multiphoton-excited fluorescence detection.

2. Degenerate four-wave mixing for detection in liquid microseparation systems (based on the coherence of laser light).

3. Fluorescence line-narrowing spectroscopy for identification purposes, a cryogenic high-resolution molecular fluorescence technique with a high potential in environmental analysis.

4. Recent developments in Raman spectroscopy (including ultraviolet-Resonance Raman and hyphenation of liquid chromatography and Raman spectroscopy).

5. Use of lasers for sample introduction in inorganic analysis based on controlled material ablation.

Electroanalytical and spectroscopic procedures for examination of interactions between double stranded DNA and intercalating drugs

A method is presented for the electroanalytical characterization of interactions of dsDNA with a drug, under conditions that both agents are dissolved in the phosphate buffer solution and both are electroactive. Normal pulse, square wave, differential pulse, and cyclic voltammetries were employed in the measurements of the drug and dsDNA oxidation signals at carbon electrodes. UV–Vis spectroscopy was used as a non-electrochemical method to support the electroanalytical data. An anticancer drug, C-1311 (5-diethylaminoethyl-amino-8-hydroxyimidazoacridinone), has been selected for the examination. Normal pulse voltammetry was particularly useful in showing that under the conditions employed neither dsDNA nor the drug were adsorbed at the electrode surface. Necessary conditions for the appearance of the well-defined dsDNA voltammetric signal (guanine peak) are: rigorous chemical and biological purity in the cell and appropriate purity of DNA. An analysis of the obtained results confirmed that there were two modes of interaction between C-1311 and dsDNA: by intercalation and electrostatically. In the presence of excess NaCl the electrostatic interactions deteriorate. The binding constants (K ₁ and K ₂, respectively) and the number (n) of nucleic base pairs (bp) and the number (m) of phosphate groups (pg) interacting with one molecule of drug have been determined. For strong interactions (intercalation) the values of the binding constant, K ₁, and the binding-site size, n, equal 3.7 × 10⁴ M⁻¹ and 2.1, respectively. For the weak electrostatic interactions the K ₂ and m parameters equal 0.28 × 10⁴ M⁻¹ and 4.7. The intercalation process is rather slow and its rate (the conditions of pseudo-first-order reaction) was estimated to equal 7 × 10⁻⁴ s⁻¹. The possibility of independent determination of both interacting agents was very useful in the study. Figure Intercalation of C-1311 into a dsDNA fragment     

Preparation of polypseudorotaxane consisting of fluorescent molecule-modified β-cyclodextrins and biotin-terminated poly(propylene glycol) with high yield

A polypseudorotaxane was prepared using 4-(N,N-dimethylamino) benzoyl modified β-cyclodextrin (DMAB-β-CD) and biotin-terminated poly(propylene glycol) (biotin-terminated PPG) in water for 7 days. When the biotin-terminated PPG was added to a saturated solution of DMAB-β-CD at room temperature, the polypseudorotaxane was not obtained. However, with increasing temperature to 60 °C, precipitation was observed. The ¹H-NMR spectrum indicated that the obtained precipitate was the polypseudorotaxane. The final yield was 54%, which was higher than that previously reported for polypseudorotaxane formation using chemically modified β-CD. The polypseudorotaxane can be useful to make a polyrotaxane via avidin–biotin molecular recognition using the terminal biotin group.     

Magnetic microsphere-based methods to study the interaction of teicoplanin with peptides and bacteria

Teicoplanin (teic) from Actinoplanes teichomyceticus is a glycopeptide antibiotic used to treat many Gram-positive bacterial infections. Glycopeptide antibiotics inhibit bacterial growth by binding to carboxy-terminal d-Ala-d-Ala intermediates in the peptidoglycan of the cell wall of Gram-positive bacteria. In this paper we report the derivatization of magnetic microspheres with teic (teic-microspheres). Fluorescence-based techniques have been developed to analyze the binding properties of the microspheres to two d-Ala-d-Ala terminus peptides. The dissociation constant for the binding of carboxyfluorescein-labeled d-Ala-d-Ala-d-Ala to teic on microspheres was established via fluorimetry and flow cytometry and was determined to be 0.5 × 10⁻⁶ and 3.0 × 10⁻⁶ mol L⁻¹, respectively. The feasibility of utilizing microparticles with fluorescence methods to detect low levels (the limit of bacterial detection was determined to be 30 colon-forming units; cfu) of Gram-positive bacteria has been demonstrated. A simple microfluidic experiment is reported to demonstrate the possibility of developing microsphere-based affinity assays to study peptide–antibiotic interaction.     

Sandwich-type Uranium-Substituted of Bismuthotungstate: Synthesis and Structure Determination of [Na(UO2)2(H2O)4(BiW9O33)2]13?

The sandwich-type [Na(UO₂)₂(H₂O)₄(BiW₉O₃₃)₂]¹³⁻ uranium (VI) has been synthesized by reacting the trivacant species of B-α-[BiW₉O₃₃]⁹⁻ with and investigated by IR and UV–Vis spectroscopy, and elemental analysis. The X-ray single crystal analysis was carried out on Na₁₃[Na(UO₂)₂(H₂O)₄(BiW₉O₃₃)₂] · 33H₂O (I) which crystallizes in the orthorhombic system, space group Pna2₁ with a = 33.8454(19) ?, b = 21.1484(12) ?, c = 13.2403(7) ?, α = 90°, β = 90°, γ = 90°, and Z = 4. The polyanion consists of two lacunary B-α-[BiW₉O₃₃]⁹⁻ groups which sandwich two uranyl cations and one sodium cation. The uranium atoms adopt distorted pentagonal–bipyramidal coordination, achieved by two equatorial bonds to each BiW₉O₃₃ unit and one external water ligand. The coordination of each uranium atom is evident by the shift of ν_as(W–O_b–W) and ν_as(Bi–O) stretching vibrational bonds. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Study of a toxin–alkaline phosphatase conjugate for the development of an immunosensor for tetrodotoxin determination

This paper describes a direct competitive immunoenzymatic spectrophotometric assay (ELISA) for tetrodotoxin (TTX) determination and the adaptation of this method for use in an electrochemical assay format. The novelty of this work involves the use of the antigen labelled with alkaline phosphatase (AP); this conjugate was prepared in our laboratory as there is no commercially available conjugate of any kind for TTX. The new conjugate was characterized in terms of its affinity for the specific antibody as well as the residual concentration and the residual activity of the enzyme (AP) incorporated as label. The proposed method based on the new conjugate showed satisfactory results for TTX determination: for the spectrophotometric method the dynamic range was 4–15 ng mL⁻¹ with a limit of detection (LOD) of 2 ng mL⁻¹ (R=0.9247), whereas for the electrochemical protocol the dynamic range was 2–50 ng mL⁻¹ and the LOD was1 ng mL⁻¹.     

Molecular biosensing system based on intrinsically disordered proteins

Intrinsically disordered proteins (IDPs) that undergo structural transition upon binding their target molecules are becoming increasingly known. IDPs, because of their binding specificity and induced folding properties, can serve as biological recognition elements for sensing applications. In this paper, BRCA1, an IDP, was utilized as the biological recognition element to detect tumor suppressor protein p53 through the BRCA1/p53 binding interaction to serve as a proof-of-concept for the use of IDPs as recognition elements. The binding resulted in a disordered-to-ordered BRCA1 conformational change, as seen in our circular dichroism (CD) measurements. This conformational change in BRCA1 (residues 219-498) was utilized in the detection of p53 (residues 311-393) via both intrinsic and extrinsic fluorescent probes. Intrinsic tryptophan residues within the BRCA1 sequence detected p53 (311-393) with a detection limit of 0.559 nM (0.112 pmol). Two environmentally sensitive fluorophores, tetramethylrhodamine-5-maleimide (TMR) and 6-((5-dimethylaminonaphthalene-1-sulfonyl)amino)hexanoic acid, succinimidyl ester (dansyl-X, SE) were conjugated to BRCA1 (219-498). Dansyl-X, SE-conjugated BRCA1 (219-498) detected p53 (311-393) with a detection limit of 1.50 nM (0.300 pmol). The sensitivities for TMR and dansyl-X, SE-conjugated BRCA1 for the detection of p53 were nearly threefold and twofold higher, respectively, than the sensitivity reported using intrinsic BRCA1 tryptophan fluorescence. CD measurements did not reveal a disruption of p53/dye-conjugated BRCA1 binding, thus validating the applicability of environmentally sensitive fluorophores as transduction moieties to detect molecules which bind to IDPs and induce a structural change.     

Photo-quenched luminescence in Co(II)-doped sol–gel zirconia

The quenching process of the laser-induced luminescence of Co(II)-doped zirconia samples prepared by the sol–gel method is reported. Zirconia monoliths doped with Co(II) at different concentrations, were laser irradiated producing fluorescence; its intensity, measured by the slope at the low energy side of the Raman spectra, is reduced with the irradiation time. The rate the fluorescence decays can be modeled as a double exponential function of the irradiation time; the characteristic times involved in this quenching process are in the range of seconds. The suppression of the luminescence has been associated to the local heating produced when the laser beam is focused in a small area (≈2 microns in diameter) on the sample. This heating process reduces physical (such as grain boundaries and surface states) and chemical (oxygen vacancies) defects; however, some residual fluorescence still remains after long periods of illumination. R. Rodríguez is on sabbatical leave at Cinvestav, Unidad Queretaro.