Crystal structures of 3,5,5′-trichloro-2,2′-bithiophene and 3,3′,5,5′-tetrachloro-2,2′-bithiophene

The crystal structures of 3,5,5-trichloro-2,2-bithiophene (I) and 3,3,5,5-tetrachloro-2,2-bithiophene (II) have been determined by single crystal X-ray diffraction techniques. BothI andII crystallize in the monoclinic crystal system. ForI,a=3.895(2),b=11.928(2),c=10.701(2)Å,=97.70(1)°, space groupP2₁,Z=2 and forII,a=8.942(2),b=3.900(2),c=15.180(2)Å,=92.30(1)°, space groupP2₁/n,Z=2. The structures have been solved by direct methods and all nonhydrogen atoms refined with anisotropic thermal parameters. ForI the final residual is 0.035 (all 1185 independent reflections, MoK radiation) and forII, 0.034 (all 1209 independent reflections, MoK radiation). BothI andII have theanti conformation butI has a torsion angle of 3.4(5)° between the two thiophene rings whileII is completely planar.     

Synthesis and structure of 5,5′,6,6′,7,7′,8,8′-octahydro-1,1′-di(methylthio)-3,3′-biisoquinoline

Title compound, C₂₀H₂₄N₂S₂, crystallizes in the orthorhombic system, space group Pbca, with cell constants a = 5.1968(5) Å, b = 15.6692(11) Å, c = 22.3881(11) Å , Z = 4, T = 293 K, D_cal = 1.299 g cm^–3. The structure was solved by direct methods and refined to R value of 0.0465 for 1566 reflections. Two methylthio-octahydroisoquinoline parts of molecule are related by the center of symmetry and possess the trans conformation. This conformation is more energetically stable than cis but the molecule can rotate about the C(6)–C(6) central bond at room temperature (molecular mechanics calculations). There is a short intramolecular contact C(5)–H(51) N(1) in the molecule. The molecules in the crystal form molecular layers parallel to (001) crystallographic plane and the molecular packing is determined by the van der Waals forces only.     

Crystal structures of two substituted biphenyl derivatives: 5,5′-di t-butyl-2-2′-biphenyldiol and 5,5′-dimethyl-2,2′-biphenyldiol

5,5-Di t-butyl-2,2-biphenyldiol (I), C₂₀H₂₆O₂, crystallizes in the orthorhombic space group P2₁2₁2₁ with a = 18.243(2), b = 9.947(2), c = 9.685(3) Å, and Z = 4; 5,5-dimethyl-2,2-biphenyldiol (II), C₁₄H₁₄O₂, crystallizes in the monoclinic space group P2₁/c with a = 9.959(2), b = 7.932(3), c = 15.392(2) Å, = 105.43(2)°, and Z = 4. The aromatic rings are tilted by 52.7(1) and 43.8(1)° to each other in compounds (I) and (II), respectively. Strong intra- and inter-molecular H-bonds connect the molecules in the crystals.     

Preparation and Reactivity of 4,4′-diaminostilbene-2,2′disulphonate

The precursor compound 4,4′-diaminostilbene-2,2′disulphonic acid DAS-(SO₃H)₂ was successfully deprotonated through reactions with (n-Bu₄N)(OH) and NaOH to produce the corresponding salts sodium 4,4′-diaminostilbene-2,2′disulphonate Na₂(DAS-(SO₃)₂) (1) and tetrabutylammonium 4,4′-diaminostilbene-2,2′disulphonate (n-Bu₄N)₂(DAS-(SO₃)₂) (2). The structure of (n-Bu₄N)₂(DAS-(SO₃)₂) (2) was confirmed through the use of single crystal X-ray diffraction. Compound (2) crystallizes in the monoclinic space group P2₁/n with the lattice parameters of a = 10.0645(6), b = 14.2573(9), c = 17.6053(11), and β = 94.3160(10). The reaction of Cu²⁺(aq) with (n-Bu₄N)₂(DAS-(SO₃)₂) resulted in the crystallization of the molecular organocopper cluster, [CuDAS-(SO₃)₂]₂·3H₂O (3), that resembles a molecular parallelogram as revealed by single crystal X-ray diffraction. Compound (3) crystallizes in the monoclinic space group P2₁/n with the lattice parameters of a = 8.8647(6), b = 10.5247(7), c = 21.2265(14), and β = 93.1730(10). Within the structure of (3) each [DAS-(SO₃)₂]²⁻ ligand is shown to bind two copper atoms through interactions with three of the five available metal binding sites.

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Graphical abstract Preparation and Reactivity of 4,4′-diaminostilbene-2,2′disulphonate Natalie C. Rader, Heather A. Nees, Paul S. Szalay*, Matthias Zeller and Allen D. Hunter The preparation of 4,4′-diaminostilbene-2,2′disulphonic and its reactivity with copper(II) are described.

     

Crystal Structures of 5,6,5′,6′-Tetramethoxy-1,1′-spirobisindane-3,3′-dione and two of its Fluorene Adducts

Abstract  

The structures of three spirobisindanes 1, 2a and 2b are reported. Each compound is a precursor to a Polymers of Intrinsic Microporosity (PIM) and is the component that provides the necessary site of contortion within the polymer. Of particular importance are the angles formed between the aromatic units around the spiro-centre as it may have direct relevance to the inefficiency of packing in the solid state packing, we think, induces microporosity in the final polymer. Compound 1 crystallized in the monoclinic P21/c space group with unit cell parameters a = 9.8000(5) Ǻ, b = 17.8710(9) Ǻ, c = 10.4100(5) Ǻ, β = 106.6280(10)°, V = 1746.92(15) A³, Z = 4, D = 1.401 Mg/m³. Compound 2a crystallized in the monoclinic P21/c space group with unit cell parameters a = 9.7460(13) Ǻ, b = 30.291(4) Ǻ, c = 8.6740(12) Ǻ, β = 97.111(3)°, 2541.0(6) A³, Z = 4, D = 1.319 Mg/m³. Compound 2b crystallized in the monoclinic P21/n space group with unit cell parameters a = 13.5670(9) Ǻ, b = 12.7930(8) Ǻ, c = 22.1960(14) Ǻ, β = 96.6630(10)°, V = 3826.4(4) A³, Z = 4, D = 1.265 Mg/m³.     

Synthesis and Characterization of Two Pb(II) Complexes of 2,2′-dihydroxy,Dimethoxy-1,1′-binaphthyl-3,3′-dicarboxylic Acid

Two new complexes {[Pb(L¹)(DMSO)₂(H₂O)]·DMF}_n (1, L¹ = 2,2′-dihydroxy-l,l′-dinaphthyl-3,3′-dicarboxylate) and {[Pb(L²)(DMS O)·DMSO}_n (2, L² = 2,2′-dimethoxy-l,l′-dinaphthyl-3,3′-dicarboxylate) have been synthesized under mild conditions and structurally characterized. Crystal structural analysis reveals that complex 1 adopts a 1D infinite chain structure which forms 2D sheet by hydrogen bonds interactions. Complex 2 possesses a 2D sheet structure, which was further assembled into a 3D supramolecular network through the π-π weak interactions. IR spectra indicates the carboxyl group coordinates with the Pb²⁺ ion. TGA shows that complex 2 is highly thermally stable up to 120°C.     

Crystal structure of (3,3′,4,4′-tetramethyl-1,1′-diphosphaferrocen-2-yl) carboxylic acid and its bis-[W(CO)5] complex·0.5C5H12: Conformation of 1,1′-diphosphaferrocenes

The structures of (3,3,4,4-tetramethyl-1,1-diphosphaferrocen-2-yl)carboxylic acid (1) and its bis-[W(CO)₅] pentane solvate complex (2) have been determined by X-ray analysis. The compound 1 crystallizes in the monoclinic P2₁ /n space group with Z = 4; a = 7.8404(9), b = 14.9441(16), c = 11.7730(14) Å, = 92.773(10)°, V = 1377.8(3) ų, and D_calc = 1.553 g cm^–3. The compound 2 crystallizes in the triclinic space group with two complex molecules and one pentane molecule in the unit cell. Cell parameters: a = 10.7070(2), b = 12.577(2), c = 13.239(3) Å, = 84.00(2), = 77.58(1), = 66.06(1)°, V = 1591.0(5) ų, and D_calc = 2.100 g cm^–3 .The fully eclipsed conformation of the phospholyl rings with P···P secondary bonding of 3.353(1) Å is observed in 1 and a partially eclipsed conformation is found in 2. The 10 possible conformations of 1,1-diphosphaferrocenes were described as the function of conformational parameter and observed geometry of the phospholyl rings.⁷ We suppose that the earlier conclusions concerning the destabilizing nature of 1,1-diphosphaferrocene conformations with < 100° cannot be considered as general. The mode of W – P coordination, the structural changes of 1 by W(CO)₅ coordination, the structural effect of phospholyl rings substitution by the –COOH group, and hydrogen bonds are analyzed.     

Synthesis and crystal structure of 1,1′-di(ethylpropionato)-2,2′-biimidazole, a macromolecular precursor

1,1,-Di(ethylpropionato)-2,2-biimidazole, C₁₆H₂₂N₄O₄, crystallizes from ice-cold ethanol in the space group P , with a = 4.6742(9), b = 9.1119(13), c = 10.175(2) Å, = 96.22(1), = 96.29(2), = 97.53(1)°, and Z = 1. The molecule crystallizes with coplanar rings and the substituents assume a trans conformation with a center of inversion between the bridging carbon atoms.     

Synthesis,Spectral Properties and Structure of New Novel 3,3′-Dibenzoyl-1,1′-(propan-1,3-diyl)-bisthiourea

Abstract  

A new 3,3′-dibenzoyl-1,1′-propan-1,3-diyl)bisthiourea was synthesized by using benzoylisothiocyanate with 1,3-diaminopropane in aprotic solvent. The structure was determinated by means of FT-IR, ¹H-NMR, ¹³C-NMR and mass spectroscopic techniques. The crystal structure of 3,3′-dibenzoyl-1,1′-(propan-1,3-diyl)bisthiourea has also been examined by using X-ray crystallographic techniques and found to be crystallized in the monoclinic space group P2 ₁ /c with the unit cell parameters: a = 5.968(1) ?, b = 19.471(2) ?, c = 16.585(2) ?, β = 98.32(1)°, V = 1907.0(4) ?³, Dx = 1.395 g cm⁻³, and Z = 4 respectively.     

Crystal and molecular structure of 2,2′-di-N-methylamino-1,1′ -di-p-hydroxyphenyldiethyleneether dihydrobromide, (C9H12ON·HBr)2O

The structure of the title compound (C₉H₁₂ON·HBr)₂O was determined by X-ray diffraction methods. The crystals are monoclinic:C2/c,a=7.645(2),b=19.777(3),c=13.704(3) Å,=98.32(2)°,V _c =2050.2 ų,Z=4,F(000)=968,D _m =1.62,D _c =1.615 Mg m^–3; MoK radiation (graphite crystal monochromator, =0.71073 Å),(MoK)=4.39 mm^–1. FinalR factor=0.061 andR _w =0.045 for 1566 reflections. The structure was solved by the heavy-atom Fourier method and refined by least-squares procedures. Each asymmetric unit in the unit cell contains one-half of the molecule, with oxygen atom O(2) at a special position with half-occupancy. The molecules are protonated at their nitrogen sites. The structure is stabilized by a three-dimensional network of hydrogen bonds. The ethylamine side chain in the molecular fragment in the asymmetric unit exhibits an extended (trans) conformation that is also found in most of the other adrenergic phenylethylamines.     

Crystal and molecular structure of the inclusion compound between 1,1′-binaphthyl-2,2′-dicarboxylic acid and acetylacetone (1∶1)

The lattice type crystalline inclusion compound of 1,1-binaphthyl-2,2-dicarboxylic acid (BNDA) with acetylacetone (AcAc) 11 has been investigated by single crystal X-ray diffraction. AcAc is present as the enolic tautomer, stabilized by a notably short intramolecular hydrogen bond. This H-bond closes a six-membered ring with delocalization of the system of conjugated double bonds. In the crystal the AcAc molecules are incorporated into channels, delimited by bulky binaphyl moieties, in a hydrogen-bonded framework of BNDA, and they do not show any disorder. The strictly stoichiometric host:guest ratio seems to be enforced by packing forces only.     

Crystal structures of two thienyl analogs of benzil – 1,2-dithien-2-ylethanedione (2,2′-thenil) and 1,2-dithien-3-ylethanedione (3,3′-thenil)

2,2-Thenil crystallizes in P2₁/c with a = 7.2501(12) Å, b = 4.7846(8) Å, c = 13.9867(23) Å, = 96.897(3), V = 481.67(14) ų, and Z = 2. The molecule resides on an inversion center and is planar. 3,3-Thenil also crystallizes in P2₁/c with a = 3.9904(8) Å, b = 21.310(4) Å, c = 11.618(2) Å, = 101.83(3), V = 966.9(3) ų, and Z = 4. Refinement of 3,3-thenil data indicated that 10.3(2)% of both thienyl rings are flip-disordered in this nonplanar molecule. A brief discussion of disorder in molecules containing terminal, unsubstituted 2- and 3-thienyl rings is presented.     

Spectroscopic, Thermal and Structural Studies of Cocrystals of 2,2′-Diamino-4,4′-bis(1,3-thiazole) with 2,5-Bis(4-pyridyl)-3,4-Diaza-2,4-Hexadiene and 1,2-Bis(4-pyridyl)Ethylenediamine

Abstract  

Two cocrystals of 2,2′-diamino-4,4′-bis(1,3-thiazole) (DABTZ) with 2,5-bis(4-pyridyl)-3,4-diaza-2,4-hexadiene (bpdh) and 1,2-bis(4-pyridyl)ethylenediamine (bpen) {[(DABTZ)(bpdh)] and [(DABTZ)(bpen)], respectively} have been synthesized and characterized by elemental analysis, IR-, ¹H NMR-, ¹³C NMR spectroscopy and were studied by thermal analysis and X-ray crystallography. Self-assembly of these compounds in the solid state is likely caused by hydrogen bonding with minor contributions from π–π stacking, C–H···π and possibly charge transfer interactions.     

Synthesis and characterization of ternary L-histidine complexes. Crystal structure of (2,2′-dipyridyl)-(L-histidinato-N,N′,O)copper(II) perchlorate 1.5 hydrate

A series of ternary complexes of copper(II), cobalt(II) and zinc(II) with L-histidine, 1,10-phenanthroline, 2,2-dipyridyl or imidazole having perchlorate or acetate as counterions were synthesized and characterized by conventional methods and for [Cu(bipy)(L-hist)]ClO₄·1.5H₂O and X-ray crystal structure was determined. The crystals belong to the monoclinic space groupC2 witha=18.843(3),b=10.582(2),c=11.020(2), =115.20(10)°,Z=4,R=0.0535. The structure is consistent of [Cu(bipy)(L-hist)]⁺ cations, perchlorate ions and water molecules. The geometry around copper is trigonal bipyramidal with one N,N,O tridentate L-histidine molecule and one 2,2-dipyridyl ligand, the apical sites are occupied by the -amino nitrogen [Cu–N(71) 1.995(8)] and by N(11) of 2,2-dipyridyl [Cu–N(11) 1.983(7)], the equatorial plane is formed by the N(3) imidazole -nitrogen [Cu–N(3) 2.140(6)], O(82) carboxylic oxygen [Cu–O(82) 2.009(5)] and N(22) [Cu–N(22) 2.010(7)].     

Synthesis and crystal structures of 4,4′-bipyridinium and 2,2′-bipyridinium pentachloro complexes containing the polynuclear anions [Bi2Cl10]4− and [Bi4Cl20]8−

The compounds 4,4-bipyridinium(2+) pentachloro-bismuthate(III) (1), [4,4-(C₁₀H₈N₂)BiCl₅] and 2,2-bipyridinium(2+) pentachloro-bismuthate(III) (2), [2,2-(C₁₀H₈N₂)Bi₂Cl₁₀] have been obtained by reacting bismuthate oxide and 4,4-bipyridine or 2,2-bipyridine in HCl acid medium. They have been characterized by single crystal X-ray analysis. (1) crystallizes in the triclinic space group with a = 9.776(2), b = 11.009(3),c = 8.346(1) Å, = 101.58(2), = 98.63(2), and = 112.86(2)°. (2) crystallizes in the monoclinic space group P2₁/c with a = 14.239(2), b = 14.226(2), c = 16.275(3) Å, and = 110.15(2)°. The crystal structure of (1) consists of 4,4-bipyridinium(2+) cations interacting through hydrogen bonding with [Bi₂Cl₁₀]^2– dimers giving rise to endless double chains, while that of (2) is formed by 2,2-bipyridinium(2+) cations and [Bi₄Cl₂₀]^8– tetramers extensively interacting through hydrogen bonding. The different polynuclearity of the anions seems related to the different directions along which each cation can form hydrogen bond interactions.     

Synthesis and Liquid Crystal Behaviour of Further 4,4″-Disubstituted 2'-Fluoro-1,1':4',1”-Terphenyls

Further to earlier work on the liquid crystal properties of fluoro-1,1':4',1”-terphenyls¹ we have now extended this series to include terminally fluoro-and cyano-substituted 2'-fluoro-1,1':4',1″-terphenyls, chiral 2'-fluoro-1,1':4',1″-terphenyls, and esters derived from 2'-fluoro-1,1':4',1”-terphenyls and incorporating the alkylcyclobutyl group. The preparations and transition temperatures for these series of compounds are presented and their transition temperatures and mesophase types are discussed. An interesting result from this work was the appearance of an S^* _C phase for one chiral homologue and of S _c phases for the esters incorporating the alkylcyclobutyl group. The S _c formation is attributed to the presence of the fluoro-substituent.

Keywords: terphenyls, fluoroterphenyls, smectic C phases, cyclobutyl esters     

Separation of (<Emphasis Type="Italic">S</Emphasis>)-(−)-3-Methyl-2-pyrrolidinone as an Inclusion Complex with (<Emphasis Type="Italic">R</Emphasis>)-(+)-4,4′,6,6′-Tetrachloro-2,2′-bis(hydroxydiphenylmethyl)-1,1′-biphenyl Host and its X-ray Structural Study

Abstract By inclusion complexation with the chiral host compound (R)-(+)-4,4′,6,6′-tetrachloro-2,2′-bis(hydroxydiphenylmethyl)-1,1′-biphenyl, racemic 3-methyl-2-pyrrolidinone was resolved and its (S)-(−)-enantiomer was isolated as a 1:1 inclusion complex, which crystallises in the orthorhombic crystal system in the space group P2₁2₁2₁ (a = 14.1163(2) ?, b = 14.7140(3) ?, c = 17.2025(3) ?). By the inclusion complexation, the keto–enol equilibrium of the guest was frozen and the keto-form was isolated in a pure form. By X-ray structural study of the complex, the guest molecule included was elucidated to be the keto-form and its absolute configuration was determined to be (S). Index Abstract By inclusion complexation with (R)-(+)-4,4′,6,6′-tetrachloro-2,2′-bis (hydroxydiphenylmethyl)-biphenyl, racemic 3-methyl-2-pyrrolidinone was resolved and its (S)-(−)-enantiomer isolated and in addition the keto–enol equilibrium of the guest was frozen and the keto-form isolated. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A structural model for a new class of conformationally constrained retinoid: (2Z,4E)-4-[3′,4′-dihydro-1′(2′H)-naphthalene-1′-ylidene]-2-butenoic acid

Racemic (2Z,4E)-4-[3′,4′-dihydro-1′(2′H)-naphthalene-1′-ylidene]-2-butenoic acid (1) is a polyene chain-shortened analog of (9Z)-retinoic acid (3) which uses a tetrahydronaphthyl ring to conformationally constrain the C6-C7 single bond (retinoic acid numbering). The structure of (1) was obtained to determine the effects of the tetrahydronaphthyl ring on the ring to polyene chain conformation as compared to a published crystal structure for (9Z)-retinal (2). The results reveal significant differences between the solid state structures of (1) and (2), particularly for torsion angles about C6, C7 and C8, C9. The title compound crystallizes in the centrosymmetric monoclinic space groupP2₁/n withZ=4. (Cell dimensions:a=10.863(2) Å,b=7.637(2) Å,c=15.781(3) and β=106.11(3)°.) The structure was refined toR=3.88% for those 1132 unique data with |F _o|>6σ(F _o). In the crystal structure, the molecules adopt a hydrogen bonded dimeric structure.