IR, Raman and SERS spectra of 2-phenoxymethylbenzothiazole

The FT-IR and FT-Raman spectra of 2-phenoxymethylbenzothiazole were recorded and analyzed. The surface enhanced Raman scattering (SERS) spectrum was recorded in a silver colloid. The vibrational wavenumbers of the compound have been computed using the Hartree–Fock/6-31G* basis and compared with the experimental values. The appearance of the Ag–O stretching mode at 237 cm⁻¹ in the SERS spectrum along with theoretically calculated atomic charge density, leads us to suggest that the molecule is adsorbed through the oxygen atom with the molecular plane tilted on the colloidal silver surface. The direction of charge transfer contribution to SERS has been discussed from the frontier orbital theory.     

IR, Raman and SERS studies of methyl salicylate

The IR and Raman spectra of methyl salicylate (MS) were recorded and analysed. Surface enhanced Raman scattering (SERS) spectrum was recorded in silver colloid. The vibrational wave numbers of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values. SERS studies suggest a flat orientation of the molecule at the metal surface.     

Simulation of IR and Raman spectra of p-hydroxyanisole and p-nitroanisole based on scaled DFT force fields and their vibrational assignments

This work deals with the vibrational spectroscopy of p-hydroxyanisole (PHA) and p-nitroanisole (PNA) by means of quantum chemical calculations. The mid and far FT-IR and FT-Raman spectra were recorded in the condensed state. The fundamental vibrational frequencies and intensity of vibrational bands were evaluated using density functional theory (DFT) with the standard B3LYP/6-31G* method and basis set combination and were scaled using various scale factors which yield a good agreement between observed and calculated frequencies. The vibrational spectra were interpreted with the aid of normal coordinate analysis based on scaled density functional force field. The results of the calculations were applied to simulate infrared and Raman spectra of the title compounds, which showed excellent agreement with the observed spectra.     

Infrared and Raman spectra of 2-chloro-2,2-difluoroacetamide (ClF2CC(O)NH2)

The infrared and Raman spectra of 2-chloro-2,2-difluoroacetamide (ClF₂CC(O)NH₂) have been recorded and analyzed with the complement of results derived from computational chemistry calculations. Thus, delocalization effects and stabilization energies have been computed for the title molecule and a complete assignment has been also proposed. ¹³C, ¹⁹F and ¹H NMR chemical shifts and coupling constants have been also measured for this substance.     

Molecular structure, IR spectra of 2-mercaptobenzothiazole and 2-mercaptobenzoxazole by density functional theory and ab initio Hartree–Fock calculations

Quantum chemistry calculations have been performed using Gaussian03 program to compute optimized geometry, harmonic vibrational frequency along with intensities in IR and Raman spectra and atomic charges at RHF/6-31+G*, B3LYP/6-31+G* and B3LYP/6-31++G* levels for 2-mercaptobenzothiazole (MBT, C₇H₅NS₂) and 2-mercaptobenzoxazole (MBO, C₇H₅NOS) in the ground state. The scaled harmonic vibrational frequencies have been compared with experimental FT-IR and FT-Raman spectra. The results show that the scaled theoretical vibrational frequencies is very good agreement with the experimental values. A detailed interpretation of the infrared and Raman spectra of 2-mercaptobenzothiazole and 2-mercaptobenzoxazole was reported. Comparison of calculated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes.     

IR, Raman and SERS spectra of disodium terephthalate

The IR and Raman spectra of disodium terephthalate were recorded and analysed. Surface enhanced Raman scattering (SERS) spectrum was recorded in silver colloid. The vibrational wavenumber of the compound have been computed using the Hartree-Fock/6-31G* basis and compared with the experimental values. SERS studies suggest a flat orientation of the molecule at the metal surface.     

Bioanalytical applications of SERS (surface-enhanced Raman spectroscopy)

Surface-enhanced Raman scattering (SERS) is a powerful technique for analyzing biological samples as it can rapidly and nondestructively provide chemical and, in some cases, structural information about molecules in aqueous environments. In the Raman scattering process, both visible and near-infrared (NIR) wavelengths of light can be used to induce polarization of Raman-active molecules, leading to inelastic light scattering that yields specific molecular vibrational information. The development of surface enhancement has enabled Raman scattering to be an effective tool for qualitative as well as quantitative measurements with high sensitivity and specificity. Recent advances have led to many novel applications of SERS for biological analyses, resulting in new insights for biochemistry and molecular biology, the detection of biological warfare agents, and medical diagnostics for cancer, diabetes, and other diseases. This trend article highlights many of these recent investigations and provides a brief outlook in order to assess possible future directions of SERS as a bioanalytical tool.     

DFT study of the IR and Raman spectra of a fluorescent dendron built from cyclotriphosphazene core

Combined experimental and theoretical studies on molecular structure of the zero generation dendron, built from the hexafunctional cyclotriphosphazene core, with five OC₆H₄(CH₂)₂NHSO₂C₁₀H₆N(CH₃)₂ terminal groups and one oxybenzaldehyde group G₀ are reported. The Fourier transform Raman and IR spectra of G₀ have been recorded. Conformations of low energy isomers of G₀ have been studied at quantum-chemical level. The optimized geometry has been calculated by density functional (DFT) method at the PBE/TZ2P level of theory. The theoretical geometrical parameters, harmonic vibrational frequencies, IR intensities and Raman scattering activities are predicted in a good agreement with the experimental data. It was found that dendron molecule G₀ has a concave lens structure with planar OC₆H₄CHO fragments and slightly non-planar cyclotriphosphazene core. Relying on DFT calculations the bands of the core and terminal groups were assigned. The frequencies of ν(NH) bands in the IR spectrum reveal the presence of the H-bonds in the dendron.     

FT-Raman and FTIR spectra, normal coordinate analysis and ab initio computations of (2-methylphenoxy)acetic acid dimer

The Fourier Transform Raman and infrared spectra of the crystallized herbicide (2-methylphenoxy)acetic acid (MPA) have been recorded in the region 4000–400 cm⁻¹. The geometry, intermolecular hydrogen bond, and harmonic vibrational frequencies of MPA have been investigated with the help of B3LYP density functional theory (DFT) methods. The calculated molecular geometry has been compared with the experimental data obtained from XRD data. The assignments of the vibrational spectra have been carried out with the aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology (SQMFF). The strong doubly hydrogen bonded interface of the dimerized system is well demonstrated by the red shift in OH stretching frequency concomitant with the elongation of bond length. The most stable structure of the dimer possesses center of symmetry and interaction energy of −83.642 kJ mol⁻¹ after the basis set superposition error (BSSE) correction by the counterpoise (CP) method. The natural bond orbital analysis (NBO) ascertains that the delocalization of unpaired electron of oxygen atom onto the CO bond causes double bond character.     

Experimental and theoretical studies on vibrational spectra of 4-(2-furanylmethyleneamino)antipyrine, 4-benzylideneaminoantipyrine and 4-cinnamilideneaminoantipyrine

This work deals with the IR and Raman spectroscopy of 4-(2-furanylmethyleneamino) antipyrine (FAP), 4-benzylideneaminoantipyrine (BAP) and 4-cinnamilideneaminoantipyrine (CAP) by means of experimental and quantum chemical calculations. The equilibrium geometries, harmonic frequencies, infrared intensities and Raman scattering activities were calculated by density functional B3LYP method with the 6-31G(d) basis set. The comparisons between the calculated and experimental results covering molecular structures, assignments of fundamental vibrational modes and thermodynamic properties were investigated. The optimized molecular geometries have been compared with the experimental data obtained from XRD data, which indicates that the theoretical results agree well with the corresponding experimental values. For the three compounds, comparisons and assignments of the vibrational frequencies indicate that the calculated frequencies are close to the experimental data, and the IR spectra are comparable with some slight differences, whereas the Raman spectra are different clearly and the strongest Raman scattering actives are relative tightly to the molecular conjugative moieties linked through their Schiff base imines. The thermodynamic properties (heat capacities, entropies and enthalpy changes) and their correlations with temperatures were also obtained from the harmonic frequencies of the optimized strucutres.     

Surface-Enhanced Raman Spectroscopy (SERS) for characterization SARS-CoV-2

We used SERS with silver nanoparticles (AgNPs) as the active substrate to develop a, simple, quick, and accurate method for the detection and characterization SARS-CoV-2 without the need for RNA isolation and purification. Inactivated SARS-CoV-2 was used. The SERS signals were more than 10⁵ times enhanced than the normal Raman (NR) spectra. The SERS spectra of SARS-CoV-2 fingerprint revealed pronounced intensity signals of nucleic acids; aromatic amino acid side chains: 1007 cm^?1 (Phe marker), 1095 cm^?1 (CN and PO₂^? markers), 1580 cm^?1 (Tyr, Trp markers). Vibrations of the protein main chain: 1144 cm^?1 (CN and NH₂ markers), 1221 cm^?1 (CN and NH markers), 1270 cm^?1 (NH₂ marker), 1453 cm^?1 (CHCH₂ marker). All of these biomolecules could be adsorbed on the AgNPs surface's dense hot patches. The intensity of the SERS band varied with the concentration of SARS-CoV-2, with a virus detection limit of less than 10³ vp/mL and RSDs of 20 %.     

NBO analysis and vibrational spectra of 2,6-bis(p-methyl benzylidene cyclohexanone) using density functional theory

Vibrational analysis of the 2,6-bis(p-methyl benzylidene cyclohexanone) [PMBC] compound was carried out by using NIR FT-Raman and FT-IR spectroscopic techniques. The equilibrium geometry, various bonding features and harmonic vibrational frequencies of PMBC have been investigated with the help of B3LYP/6-31G(d) density functional theory method. The optimized geometry clearly demonstrates cyclohexanone ring chair conformation is changed into half-chair conformation. The shortening of C–H bond length and blue shifting of the CH stretching wavenumber suggest the existence of improper weak C–HO hydrogen bonding, which is confirmed by the natural bond orbital analysis. The Mulliken population analysis on atomic charges and the HOMO–LUMO energy are also calculated.     

Vibrational Study (Raman,SERS, and IR) of Plant Gallnut Polyphenols Related to the Fabrication of Iron Gall Inks

FT-Raman, FTIR, and SERS spectra of the structurally related gallnut polyphenols tannic acid, gallic acid, pyrogallol, and syringic acid are reported in this work aiming at performing a comparative assignation of the bands and finding specific marker features that can identify these compounds in complex polyphenol mixtures. Tannic and gallic acids are the principal components in oak gallnuts, and they can be found in iron gall inks. The different functional groups existing in these molecules and their spatial distribution lead to slight changes of the vibrations. The Raman spectra are dominated by bands corresponding to the ring vibrations, but the substituents in the ring strongly affect these vibrations. In contrast, the FTIR spectra of these molecules are dominated by the peripheral oxygen-containing substituents of the aromatic ring and afford complementary information. SERS spectroscopy can be used to analyze trace amounts of these compounds, but the spectra of these polyphenols show strong changes in comparison with the Raman spectra, indicating a strong interaction with the metal. The most significant modification observed in the SERS spectra of these compounds is the weakening of the benzene 8a ring vibration and the subsequent intensification of the 19a mode of the benzene ring. This mode is also more intense in the FTIR spectra, and its intensification in the SERS spectra could be related to a drastic change in the molecular polarizability associated with the interaction of the polyphenol with the metal in Ag NPs.     

Far IR and Raman vibrational spectra of nitramines

Vibrational spectra of several nitramines in the long-wave region (50–450 cm⁻¹) were studied. The frequencies of intra- and intermolecular vibrations were separated and a tentative assignment of the frequencies of self-associative complexes was performed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 2241–2244, November, 1998.     

Simulation of the Raman spectra of zwitterionic glycine + nH2O (n = 1, 2, …, 5) by means of DFT calculations and comparison to the experimentally observed Raman spectra of glycine in aqueous medium

Raman spectra of an aqueous solution of glycine (Gly) have been recorded in the range of 400-2000 cm⁻¹. In aqueous solution, glycine molecules exist in their zwitterionic form, having two opposite charged poles, COO⁻ and NH₃⁺. The zwitterionic structure of glycine (ZGly) is stabilized by the hydrogen bond interaction of water (W) molecules. In the present report, we have optimized the ground state geometries of different hydrogen bonded complexes of [ZGly + (W)_n=1-5] in aqueous medium using DFT calculations at the B3LYP/6-311++G(d) level of theory. A comparative discussion on the structural details and binding energies (BEs) of each conformer has been also done. The theoretical Raman spectra were calculated corresponding to the most stable [ZGly + (W)_n=1-5] conformers. The theoretically simulated Raman spectra of each stable conformer were compared with experimentally observed Raman spectra to explore the number of water molecules needed for stabilizing the structure of ZGly. The theoretically simulated Raman spectra corresponding to the most stable conformer of [ZGly + (W)₅] having a BE of −22.8 kcal/mol, are matching nicely with the experimentally observed Raman spectra. Thus, on the basis of the above observations, we conclude that the conformer, [ZGly + (W)₅] is the most probable conformer in the aqueous medium. We also believe that in the conformer, [ZGly + (W)₅] the five water molecules are arranged around the ZGly in such a way that the effect of steric hindrance is less compared to the other conformers. The dipole-dipole interaction potential (DDP) is also calculated corresponding to the strongest hydrogen bond for each [ZGly + (W)_n=1-5] conformer.     

OH stretch IR spectra of (H2O)3 and benzene-(H2O)3

The OH stretch IR spectrum of (H₂O)₃ is significantly altered upon complexation of the cluster with a benzene molecule. Theoretical calculations show that the differences in the OH stretch spectra of (H₂O)₃ and benzene-(H₂O)₃ are primarily due to mode localization induced by the benzene molecule. Received: 27 January 1997 / Accepted: 28 January 1997     

Raman and SERS study on ibuprofen metal complexes with biomedical interest

Ibuprofen is one of the most widely used non-steroidal anti-inflammatory drugs (NSAIDs), in which the carboxylate group is available for metal–ligand interactions. The most stable geometries for ibuprofen (in both its protonated and deprotonated forms) were identified by optimizations obtained by the unrestricted Density Functional Theory (DFT). Theoretical study of ibuprofen interacting with Ag colloid in solution, led to two (for the protonated form) and three (for the deprotonated form) different optimized geometries, corresponding to different interaction sites of the Ag₂ cluster. Frequency calculations were performed in the limit of the harmonic approximation, using the aug-cc-pVDZ basis set. Interpretation of the theoretical Raman spectra was performed by the Potential Energy Distribution (PED) analysis of the fundamental vibrations modes. Raman study on the solid Ibuprofen-metal complexes confirmed that Co²⁺ gives monodentate complexes, while Zn²⁺ adopts a bidentate coordination. SERS spectra of metal complexes, suggested that at ppm concentration, the formation of stable 2:1 metal complexes is excluded, while is more probable the formation of 1:1 adduct with bidentate binding on the carboxylic group. The metal reaches its total coordination shell by complexation of water molecules.     

Improved DFT calculation of Raman spectra of silicates

Very accurate vibrational spectra of silicates are obtained from DFT calculations if the appropriate Hamiltonian is used. Theoretical considerations suggest that the Hartree-Fock component of ACM1 hybrid functionals should be 1/6 instead of 1/4 for this class of compounds. When applied to the PBE functional this removes the scaling error of the calculated vibrational frequencies. Calculations using this PBE(n = 6) functional in combination with optimized Gaussian basis sets result in very small remaining deviations between observed and calculated Raman shifts, with standard uncertainties of ≈3.5 cm⁻¹, maximum deviations of ≈10 cm⁻¹, and no significant systematic trends. This has been confirmed for a wide range of silicate structures, for which high-quality Raman spectra have been published: forsterite α-Mg₂SiO₄ (nesosilicate), γ-Y₂Si₂O₇ (sorosilicate), K₂Ca₃Si₃O₁₀ (oligosilicate), K₂Ca₄Si₈O₂₁ (phyllosilicate), and α-quartz SiO₂ (tectosilictae).     

Surface-enhanced Raman spectra of pyridine and pyrazolide on silver colloids: chemical and electromagnetic effects

The surface-enhanced Raman spectra of pyridine and pyrazolide adsorbed on silver colloids are discussed with the help of a density functional theory calculation, based on a mixed functional. The ligand–surface interaction is modelled as an adduct of pyridine and pyrazolide with a single Ag atom or with a small Ag cluster. It is found that the model adduct satisfactorily reproduces the relative Raman intensities of adsorbed pyridine, while the same is not the case for pyrazolide. From the analysis of the excitation profiles the observed behaviour is correlated with the relative importance of the chemical and electromagnetic effects.Acknowledgementsensp;The authors gratefully thank the Italian Ministero dellIstruzione, Universita e Ricerca and the Consiglio Nazionale delle Ricerche for financial support to the Progetto Finalizzato Materiali Speciali II.Contribution to the Jacopo Tomasi Honorary Issue     

IR and Raman spectra, hydrogen bonds, and conformations of N-(2-hydroxyethyl)-4,6-dimethyl-2-oxo-1,2-dihydropyrimidine (drug Xymedone)

Hydrogen bonds and structure of drug Xymedone in different phase and aggregate states were studied using IR and Raman spectroscopy, IR microscopy, quantum chemical calculations (B3LYP/6-31G*), X-ray powder diffractometry, and DSC and TGA methods. It was found that the synthesized specimen of Xymedone powder is a mixture of two gauche-conformers. First one is bound by intermolecular hydrogen bonds and second one is stabilized by an intramolecular hydrogen bond. Upon the dissolution of Xymedone the conformational equilibrium shifted in favor of conformers of the first or second type depending on the solvent nature.