Alkanethiol/Au(111) self-assembled monolayers contain gold adatoms: scanning tunneling microscopy before and after reaction with atomic hydrogen

Alkanethiol self-assembled monolayers on Au(111) are widely studied, yet the exact nature of the sulfur-gold bond is still debated. Recent studies suggest that Au(111) is significantly reconstructed, with alkanethiol molecules binding to gold adatoms on the surface. These adatoms are observed using scanning tunneling microscopy before and after removing the organic monolayer with an atomic hydrogen beam. Upon monolayer removal, changes in the gold substrate are seen in the formation of bright, triangularly shaped islands, decreasing size of surface vacancy islands, and faceting of terrace edges. A 0.143 +/- 0.033 increase in gold coverage after monolayer removal shows that there is one additional gold adatom for every two octanethiol molecules on the surface.     

Au adatoms in self-assembly of benzenethiol on the Au(111) surface

Self-assembly of benzenethiol at low coverage on Au(111) was studied using low-temperature scanning tunneling microscopy. Phenylthiolate species (PhS), formed by thermal dehydrogenation of the parent PhSH molecule, was found to self-assemble into surface-bonded complexes with gold adatoms. Each complex involves two PhS species and one gold adatom. The PhS species form either cis- or trans-geometry relative to each other. At a higher coverage, the complexes coalesce, most likely due to the formation of weak C-H...S hydrogen bonds facilitated by the spatial arrangement of the PhS groups. Our findings thus establish that the self-assembly of arenethiols on the Au(111) surface is driven by gold adatom chemistry, which has recently been found to be the key ingredient in the self-assembly of alkanethiols on gold.     

Stabilizing gold adatoms by thiophenyl derivatives: a possible route toward metal redispersion

Tris(phenylthio)benzene molecules have been synthesized in order to explore their ability to trap single Au adatoms on an Au(111) surface. The resulting metal-organic complexes have been characterized with low-temperature scanning tunneling microscopy and infrared reflection absorption spectroscopy; possible structure models have been derived from density functional calculations. Upon room temperature deposition, the thiophenyl derivatives form dimer structures, comprising two molecules and six Au adatoms. Below 100 K, isolated molecules are found as well that have trapped up to six Au atoms. On the basis of the experimental results and calculated formation energies of the complexes, we discuss potential applications of the thioethers for the redispersion of metals on a catalyst surface. First experiments performed on Au particle ensembles prepared on alumina thin films suggest that the molecular ligands are indeed able to change the distribution of gold on the oxide surface.     

Effect of anion adsorption on early stages of copper electrocrystallization at Au(111) surface

The monolayer and submonolayer deposition of copper on Au(111) electrode surface in the presence of chloride and sulfate ions was studied by in situ X-ray absorption and electrochemical techniques. The anions coadsorb with the deposited copper adatoms and have a strong influence on the structure of these mixed overlayers. Copper deposited in the presence of chloride forms a bilayer in which copper atoms are sandwiched between the gold substrate and the top layer of chloride ions. The bilayer is well ordered and has a (5×5) long range structure. The copper atoms are packed in registry with the top layer of chloride ions. In contrast, copper adatoms deposited in the presence of sulfate ions are packed in registry with respect to the Au(111) substrate. The coadsorbed copper and sulfate form a highly corrugated overlayer. The copper adatoms assume a honeycomb (√3×√3) structure with the center of the honeycomb occupied by sulfate. The sulfate ion adsorbs with three of its four oxygens directed towards the hexagon of copper adatoms. The bond angle between the copper adatom and the oxygen of the sulfate ion is approximately equal to 45 °. Our data indicate that, in contrary to the literature reports, the (√3×√3) structure observed on STM and AFM images corresponds to the corrugation of adsorbed sulfate ions rather than copper adatoms.     

Density functional theory study of the adsorption of alkanethiols on Cu(111), Ag(111), and Au(111) in the low and high coverage regimes

The structure, the surface bonding, and the energetics of alkanethiols adsorbed on Cu(111), Ag(111), and Au(111) surfaces were studied under low and high coverages. The potential energy surfaces (PES) for the thiol/metal interaction were investigated in the absence and presence of externally applied electric fields in order to simulate the effect of the electrode potential on the surface bonding. The electric field affects the corrugation of the PES which decreases for negative fields and increases for positive fields. In the structural investigation, we considered the relaxation of the adsorbate and the surface. The highest relaxation in a direction perpendicular to the surface was observed for gold atoms, whereas silver atoms presented the highest relaxation in a plane parallel to the surface. The surface relaxation is more important in the low coverage limit. The surface bonding was investigated by means of the total and projected density of states analysis. The highest ionic character was observed on the copper surface whereas the highest covalent character occurs on gold. This leads to a strong dependence of the PES with the tilt angle of the adsorbate on Au(111) whereas this dependence is less pronounced on the other metals. Thus, the adsorbate-relaxation and the metal-relaxation contributions to the binding energy are more important on gold. The adsorption of thiols on gold was investigated on the 111 surface as well as on a surface with gold adatoms in order to elucidate the effect of thiols on the surface diffusion of gold. The CH(3)CH(2)S radical adsorbs ontop of the gold adatom. The diffusional barrier of the CH(3)CH(2)SAu species is lower than that for a bare gold adatom and is also lower than that for the bare thiol radical. The adsorption of the molecular species CH(3)SH and CH(3)CH(2)SH was also investigated on Au(111). They adsorb via the sulfur atom ontop of a gold atom. On the other hand, the adsorption of the alkanethiol radicals on the perfect 111 surfaces occurs on the face centered cubic (fcc)-bridge site in the low coverage limit for all metals and shifts toward the fcc site at high coverage on copper and silver.     

Electrodeposition of Au monolayer on Pt(111) mediated by self-assembled monolayers

In-situ scanning tunneling microscopy (STM), cyclic voltammetry (CV), and infrared reflection-adsorption spectroscopy (IRRAS) have been used to examine the electrodeposition of gold onto Pt(111) electrodes modified with benzenethiol (BT) and benzene-1,2-dithiol (BDT) in 0.1 M HClO4 containing 10 microM HAuCl4. Both BT and BDT were attached to Pt(111) via one sulfur headgroup. STM and IRRAS results indicated that the other SH group of BDT was pendant in the electrolyte. Both BT and BDT formed (2 x 2) structures at the coverage of 0.25, and they were transformed into (square root(3) x square root(3))R30 degrees as the coverage was raised to 0.33. These two organic surface modifiers resulted in 3D and 2D gold islands at BT- and BDT-coated Pt(111) electrodes, respectively. The pendant SH group of BDT could interact specifically with gold adspecies to immobilize gold adatoms on the Pt(111) substrate, which yields a 2D growth of gold deposition. Molecular resolution STM revealed an ordered array of (6 x 2 square root(13)) after a full monolayer of gold was plated on the BDT/Pt(111) electrode. Since BDT was strongly adsorbed on Pt(111), gold adatoms only occupied free sites between BDT admolecules on Pt(111). This is supported by a stripping voltammetric analysis, which reveals no reductive desorption of BDT admolecules at a gold-deposited BDT/Pt(111) electrode. It seems that the BDT adlayer acted as the template for gold deposit on Pt(111). In contrast, a BT adlayer yielded 3D gold deposit on Pt(111). This study demonstrates unambiguously that organic surface modifiers could contribute greatly to the electrodeposition of metal adatoms.     

Oxidation of an organic adlayer: a bird's eye view

The reaction of O(2) with an adlayer of the oligopyridine 2-phenyl-4,6-bis(6-(pyridine-2-yl)-4-(pyridine-4-yl)-pyridine-2-yl)pyrimidine (2,4'-BTP), adsorbed on the (111) surfaces of silver and gold and on HOPG--which can be considered as a model system for inorganic|organic contacts--was investigated by fast scanning tunneling microscopy (video STM) and dispersion corrected density functional theory (DFT-D) calculations. Only on Ag(111), oxidation of the 2,4'-BTP adlayer was observed, which is related to the fact that under the experimental conditions O(2) adsorbs dissociatively on this surface leading to reactive O adatoms, but not on Au(111) or HOPG . There is a distinct regiospecifity of the oxidation reaction caused by intermolecular interactions. In addition, the oxidation leads to a chiral ordering. The relevance of these findings for reactions involving organic monolayers is discussed.     

Static investigation of adsorption and hetero‐diffusion of copper,silver, and gold adatoms on the (111) surface

In this work, we have used the static molecular simulations combined with an interatomic potential derived from the embedded‐atom method to study the adsorption and hetero‐diffusion on the (111) surface of Cu, Ag, and Au adatoms by using LAMMPS code. The investigation is performed for six heterogeneous systems such as Ag/Au(111), Ag/Cu(111), Au/Ag(111), Au/Cu(111), Cu/Ag(111), and Cu/Au(111). First, we have investigated the relaxation trends and the bond lengths of the atoms in the systems. The calculation results show that, the top layer spacing between the first and second layers of the Au(111), Ag(111), and Cu(111) substrates is contracted. This contraction is found to be more important in the Au(111) substrate. On the other hand, the strong reduction of the binding length is found in Au/Cu(111) for the different adsorption sites. In addition, the binding, adsorption, and static activation energies for all studied systems were examined. The results indicated that the binding and adsorption energies reached their maximum values in the Au/Cu(111) and Au/Ag(111) systems, respectively. Moreover, the static activation barriers for hopping diffusion on the (111) surfaces are found to be low compared with those found in the (100) and (110) surfaces. Therefore, our calculations showed that the difference in energy between the hcp and fcc sites on the (111) surfaces is very small. Copyright © 2017 John Wiley & Sons, Ltd.     

Cryogenic CO oxidation on TiO(2)-supported gold nanoclusters precovered with atomic oxygen

Bulk gold has long been regarded as a noble metal, having very low chemical and catalytic activity. However, metal oxide-supported gold particles, particularly those that are less than 5 nm in diameter, have been found to have remarkable catalytic properties. In this study we show that impinging gas-phase CO molecules react readily with oxygen adatoms preadsorbed on Au/TiO(2)(110) to produce CO(2) even under conditions in which the sample is cryogenically cooled. Gold particle size seems to have little effect on the CO oxidation reaction when oxygen adatoms are preadsorbed. We also show that as the oxygen adatom coverage increases, the rate of CO oxidation decreases on Au/TiO(2) at cryogenic temperatures.     

Interaction between NO and Na, O, S, Cl on Au and Pd(111) surfaces

NO co-adsorption with X (X = Na, O, S, and Cl) on Au and Pd(111) surfaces is studied using density functional theory (DFT) calculations to get a deeper insight into the extraordinary sulfur enhanced adsorption on the Au surface. It is found that both electronegative and electropositive adatoms can enhance NO adsorption on Au(111). In Na + NO/Au(111), the strong electrostatic attraction between Na and NO dominates and stabilizes NO adsorption, though Na-induced surface negative charging weakens NO adsorption. In (O, S, Cl) + NO/Au, the electronegative atoms would induce a slight surface distortion and enhance NO adsorption accordingly. NO adsorption on Pd(111) is enhanced by Na, but weakened by electronegative species. We suggest that the unique features of noble metals, i.e., the narrow DOS at the Fermi level (E(F)) and the deep buried d-band center, should play an important role in the promotion of NO adsorption on their surface as the CO case.     

Tailoring the Self-assembly of Melamine on Au (111) via Doping with Cu Atoms

The doping effect of Cu on the self-assembly film of melamine on an Au(111) surface has been investigated with scanning tunneling microscopy (STM). The evaporated Cu adatoms occupy the positions underneath the amino groups and change the hydrogen bonding pattern between the melamine molecules. Accordingly, the self-assembly structure has changed stepwise from a well-defined honeycomb into a track-like and then a triangular structure depending on the amount of Cu adatoms. The interaction between Cu adatom and melamine is moderate thus the Cu adatoms can be released upon mild heating to around 100℃. These findings are different from previous observations of either the coordination assembly or the physically trapped metal adatoms.     

甲酸在Au（997）台阶表面的氧化反应

金催化是纳米催化的代表性体系之一,但对金催化作用的理解还存在争议,特别是金颗粒尺寸对其催化作用的影响.金颗粒尺寸减小导致的表面结构主要变化之一是表面配位不饱和金原子密度的增加,因此研究金原子配位结构对其催化作用的影响对于理解金催化作用尺寸依赖性具有重要意义.具有不同配位结构的金颗粒表面可以利用金台阶单晶表面来模拟.我们研究组以同时具有Au(111)平台和Au(111)台阶的Au(997)台阶表面为模型表面,发现Au(111)台阶原子在CO氧化、NO氧化和NO分解反应中表现出与Au(111)平台原子不同的催化性能.负载型Au颗粒催化甲酸氧化反应是重要的Au催化反应之一.本文利用程序升温脱附/反应谱(TDS/TPRS)和X射线光电子能谱(XPS)研究了甲酸在清洁的和原子氧覆盖的Au(997)表面的吸附和氧化反应,观察到Au(111)台阶原子和Au(111)平台原子不同的催化甲酸根氧化反应行为.与甲酸根强相互作用的Au(111)台阶原子表现出比与甲酸根弱相互作用的Au(111)平台原子更高的催化甲酸根与原子氧发生氧化反应的反应活化能.在清洁Au(997)表面,甲酸分子发生可逆的分子吸附和脱附.甲酸分子在Au(111)台阶原子的吸附强于在Au(111)平台原子的吸附. TDS结果表明,吸附在Au(111)台阶原子的甲酸分子的脱附温度在190 K,吸附在Au(111)平台原子的甲酸分子的
　　脱附温度在170 K. XPS结果表明,分子吸附甲酸的C 1s和O 1s结合能分别位于289.1和532.8 eV.利用多层NO2的分解反应在Au(997)表面控制制备具有不同原子氧吸附位和覆盖度的原子氧覆盖Au(997)表面,包括氧原子吸附在(111)台阶位的0.02 ML-O(a)/Au(997)、氧原子同时吸附在(111)台阶位和(111)平台位的0.12 ML-O(a)/Au(997)、氧原子和氧岛吸附在(111)平台位和氧原子吸附在(111)台阶位的0.26 ML-O(a)/Au(997). TPRS和XPS结果表明,甲酸分子在105 K与Au(997)表面原子氧物种反应生成甲酸根和羟基物种,但甲酸根物种的进一步氧化反应依赖于Au原子配位结构和各种表面物种的相对覆盖度.在0.02 ML-O(a)/Au(997)表面暴露0.5 L甲酸时, Au(111)台阶位氧原子完全反应,甲酸过量.表面物种是Au(111)台阶位吸附的甲酸根、羟基和甲酸分子.在加热过程中,甲酸分子与羟基在181 K反应生成甲酸根和气相水分子(HCOOH(a)+ OH(a)= H2O + HCOO(a)),甲酸根在340 K发生歧化反应生成气相HCOOH和CO2分子(2HCOO(a)= CO2+ HCOOH).在0.12 ML-O(a)/Au(997)和0.26 ML-O(a)/Au(997)表面暴露0.5 L甲酸时,甲酸分子完全反应,原子氧过量.表面物种是Au(111)平台位和Au(111)台阶位吸附的甲酸根、羟基和原子氧.在加热过程中, Au(111)平台位和Au(111)台阶位的甲酸根分别在309和340 K同时发生氧化反应(HCOO(a)+ O(a)= H2O + CO2)和歧化反应(2HCOO(a)= CO2+ HCOOH)生成气相CO2, H2O和HCOOH分子.在0.26 ML-O(a)/Au(997)表面暴露10 L甲酸时,甲酸分子和原子氧均未完全消耗.表面物种是Au(111)平台位和Au(111)台阶位吸附的甲酸根、羟基、甲酸分子和原子氧.在加热过程中,除了上述甲酸根的氧化反应和歧化反应,还发生171 K的甲酸分子与羟基的反应(HCOOH(a)+ OH(a)= H2O + HCOO(a))和216 K的羟基并和反应(OH(a)+ OH(a)= H2O + O(a)).     

Theoretical study of NO adsorption on gold surfaces

The activities of neutral,anionic,and cationic Au(111),Au(100),and Au(310) surfaces,as well as an Au adatom on Au(111) surface towards NO adsorption have been studied by performing density functional theory calculations.It was found that the activity of gold increases as the coordination number of the gold atoms decreases,and that the cationic surfaces are generally more active than the neutral and anionic surfaces.The activity of Au surfaces towards NO adsorption is attributable to the presence of low coor...     

Formation and healing of micrometer-sized channel networks on highly mobile Au(111) surfaces

Practical protocols are presented to reproducibly prepare micrometer-sized Au(111) substrates. Au(111) terraces of micrometer dimensions and atomic smoothness were crystallized by flame-annealing vacuum-deposited gold films on glass and on millimetric amorphous gold shots. Gold films and shots that were slowly cooled in a moderately applied stream of nitrogen gas exhibited large and stable crystal surfaces with Au(111) morphologies. Similarly, flame-annealed gold samples cooled with another protocol--in much rougher streams of nitrogen gas--produced morphologically unstable and highly mobile Au(111) layers. Within the first hour after preparation, however, rapid microscale restructuring in the layers produced complex morphologies of hexagonal channel networks and islands that were predominantly triangular. These channeled gold layers fused slowly in the following hours, with velocities of 0.01-0.2 A/s, as quantified by digital image correlation (DIC). Atomically smooth, stable, and predominantly triangular Au(111) terraces on the scale of micrometers were observed approximately 24 h after the sample preparations.     

Chain-branching control of the atomic structure of alkanethiol-based gold-sulfur interfaces

Density functional theory structure calculations at 0 K and simulations at 300 K of observed high-resolution in situ scanning tunneling microscopy (STM) images reveal three different atomic-interface structures for the self-assembled monolayers (SAMs) of three isomeric butanethiols on Au(111): direct binding to the Au(111) surface without pitting, binding to adatoms above a regular surface with extensive pitting, and binding to adatoms with local surface vacancies and some pitting. Thermal motions are shown to produce some observed STM features, with a very tight energy balance controlling the observed structures. Variation of the degree of substitution on the α carbon is found to significantly change the relative energies for interaction of the different types of adatom structures with the surface, while the nature of the surface cell, controlled primarily by inter-adsorbate steric interactions, controls substrate reorganization energies and adsorbate distortion energies. Most significantly, by manipulating these features, chemical control of the adsorbate can produce stable interfaces with surface pitting eliminated, providing new perspectives for technological applications of SAMs.     

Au/Al2O3催化剂的制备及其在CH4/CO2重整反应中的催化活性

采用浸渍法和沉积－沉淀法制备了四种不同的Au/Al2O3催化剂，测定了它们在氢气还原前后及催化反应后的金含量及比表面积，结果表明，制备方法明显影响催化剂的金含量，应用X－光粉末衍射技术研究了这些催化剂经还原处理及反应后的物相变化，金以Au^0物相存在，没有发现氧化态的金物相，考察了该催化剂在CH4／CO2重整反应中的催化活性，发现金催化剂的活性取决于金粒子的大小，浸渍法制备的金催化剂具有较大的金晶粒尺寸，催化活性低，沉积－沉淀法制备的金催化剂金晶粒尺寸较小，催化活性较高，以尿素为沉淀剂制备的催化剂给出1073K时的CH4和CO2转化率分别为8．1％和17．6％，高温反应不仅导致金晶粒的聚集，而且存在明显的金流失现象。     

Effect of coverage and defects on the adsorption of propanethiol on Au(111) surface: a theoretical study

Periodic density functional calculations have been carried out to investigate both the thiol adsorption on Au(111) surface and the reaction mechanism for the formation of the self-assembled monolayers, taking propanethiol as a representative example. The effect of coverage and surface defects (adatoms and vacancies) has been analyzed. It is found that the most stable physisorption (undissociated) site is an adatom site, whereas the chemisorption site for the thiol is a vacancy site or protrusion consisting of a pair of adatoms, followed by one adatom site. The results point out that the thiolate self-assembled monolayer adsorption process occurs preferentially on step edges.     

On the formation mechanism of the "pancake" decahedron gold nanoparticle

We have studied the thermodynamic and kinetic growth mechanisms behind the formation of the "pancake" decahedron (D(h)) gold nanoparticle using computer simulation. Free energy calculations showed that the full pancake morphology is thermodynamically unstable across all the nanoparticle size ranges studied. However, from observations of growth simulations we discovered that a kinetic transport mechanism plays a significant contributing role in the formation process through a transfer of adatoms from the top and bottom (111) D(h) faces to the side (100) faces. More specifically we observed how diffusing adatoms on the (111) face are at times "pulled" off this face and into the (111)-(100) edge of the D(h), forcing a row of (100) side atoms into a (1x5) hexagonal reconstruction. Subsequently, this row of atoms was observed to buckle and then deconstruct forcing adatoms out onto the (100) side face completing the transfer. This transport mechanism is shown to be the main kinetic driving force behind the growth of the thermodynamically unstable pancake D(h) nanoparticle. The observed mechanism has implications for the nonequilibrium morphologies of nanoparticles involving a (100)-(111) surface boundary, especially for systems with surface reconstructions which increase the density of the surface.     

Application of the site blocking method to the investigation of the kinetics of carbon monoxide electrooxidation on nanostructured Pt

In this work, we apply a recently developed selective site blocking with gold adatoms (Kuznetsov et al. Electrocatal 3:211–220, 2012) for studying the electrooxidation of adsorbed carbon monoxide on electrodeposited Pt. The reaction is studied using chronoamperometry, and the obtained current transients are fitted with a nucleation-and-growth model in order to determine the characteristic kinetic parameters on defect and terrace (facet) sites. We conclude that Au selectively blocks defect sites up to very high coverages of 0.42 MLs, strongly slowing down the reaction kinetics. Blocking of defect sites with Au adatoms also results in an increase of the packing density of CO on terrace sites. The rate constant of CO oxidation on defects is higher than that on terraces and exhibits higher Tafel slope.     

Interaction between benzenedithiolate and gold: classical force field for chemical bonding

We have constructed a group of classical potentials based on ab initio density-functional theory (DFT) calculations to describe the chemical bonding between benzenedithiolate (BDT) molecule and gold atoms, including bond stretching, bond angle bending, and dihedral angle torsion involved at the interface between the molecule and gold clusters. Three DFT functionals, local-density approximation (LDA), PBE0, and X3LYP, have been implemented to calculate single point energies (SPE) for a large number of molecular configurations of BDT-1, 2 Au complexes. The three DFT methods yield similar bonding curves. The variations of atomic charges from Mulliken population analysis within the molecule/metal complex versus different molecular configurations have been investigated in detail. We found that, except for bonded atoms in BDT-1, 2 Au complexes, the Mulliken partial charges of other atoms in BDT are quite stable, which significantly reduces the uncertainty in partial charge selections in classical molecular simulations. Molecular-dynamics (MD) simulations are performed to investigate the structure of BDT self-assembled monolayer (SAM) and the adsorption geometry of S adatoms on Au (111) surface. We found that the bond-stretching potential is the most dominant part in chemical bonding. Whereas the local bonding geometry of BDT molecular configuration may depend on the DFT functional used, the global packing structure of BDT SAM is quite independent of DFT functional, even though the uncertainty of some force-field parameters for chemical bonding can be as large as approximately 100%. This indicates that the intermolecular interactions play a dominant role in determining the BDT SAMs global packing structure.