Synthesis of 1,3-{Di-[N-bis(dimethylamino)methane]}- benzyl-diamide and its Molecular Recognition of Nucleotides in Aqueous Solution

1,3-Di-{N-[bis(dimethylamino)methane]}benzyl-diamide 1 was synthesized by the reaction of isophthaloyl dichloride with 1,1,3,3-tetramethylguanidine (TMG). Its structure was confirmed by IR, ¹H NMR, EI-MS and elemental analysis. ¹H NMR results of the interaction of 1 with phosphate-containing biomolecules showed it has the ability of selective molecular recognition for nucleotides.     

Osmotic effects on the enclosed volume and interlamellar spacing of multilamellar DODAC vesicles

Dispersions of multilamellar dioctadecyldimethylammonium chloride (DODAC) vesicles are known to have a wide range of sizes and lamellarities. Osmotic effects on these dispersions were investigated by means of NMR diffusometry and small angle X-ray scattering (SAXS). A clear decrease in the enclosed volume and d-spacing was observed upon a hyperosmotic stress (sucrose and CaCl₂). However, the decrease was lower than theoretically predicted for ideal osmometers. The difference was explained by the electrostatic repulsion between the charged bilayers and the finite bilayer membrane flexibility. No significant differences were observed when the osmotic stress was applied either above or below the transition temperature (T_m) when sucrose was used. Using CaCl₂ as the osmotic agent, the reduction of the enclosed volume was smaller when the hyperosmotic pressure was applied above T_m compared to when it was applied below T_m. This can be explained by similar specific shape changes as observed when unilamellar vesicles were osmotically stressed in the presence of a salt above T_m.     

NMR and theoretical study on the interaction between diperoxovanadate and 3-picoline derivatives

To understand the substituent effects of 3-picoline derivatives on reaction equilibrium, the interactions between a series of 3-picoline-like ligands and [OV(O₂)₂(D₂O)]^?/[OV(O₂)₂(HOD)]^? in solution were explored by multinuclear (¹H, ¹³C, and ⁵¹V) magnetic resonance, COSY, and HSQC in 0.15 mol L^?1 NaCl ionic medium for mimicking physiological conditions. The relative reactivity among the 3-picoline derivatives is 3-methyl pyridine > nicotinate >nicotinamide > ethyl nicotinate. Competitive coordination results in the formation of a series of new six-coordinated peroxovanadate species [OV(O₂)₂L] ^{n ?} (L = 3-picoline derivatives, n = 1 or 2). Density functional calculations provide a reasonable explanation on the relative reactivity of the 3-picoline derivatives. Solvation effects play an important role in these reactions.     

Complete 1H and 13C assignments of some epipodophyllotoxin derivatives

The complete analyses of the ¹H and ¹³C NMR spectra of the ortho ester analogues of etoposide are reported and differentiation of the α and β isomers of these derivatives is suggested by using the γ‐gauche effect upon the ¹³C chemical shift. Copyright © 2003 John Wiley & Sons, Ltd.     

A study of the 15N NMR chemical shifts in substituted anilines and phenylhydrazines, and their derivatives

The analysis of (15)N chemical shift data from over a hundred anilines, N-methyl anilines, N,N-dimethyl anilines and phenylhydrazines with substituents in the phenyl ring leads to an empirical equation, delta(cal) = deltaon + Deltao + Deltam + Deltap, for calculating (15)N NMR chemical shifts of the amino group. This equation is based on a linear regression analysis using eighteen substituent parameters and leads to good conformity with the expected data.     

Design,synthesis, and biological evaluation of novel benzimidazole derivatives and their interaction with calf thymus DNA and synergistic effects with clinical drugs

A series of new benzimidazole derivatives was synthesized and characterized by IR,1H NMR,13C NMR,MS,and HRMS spectra.All the new compounds were screened for their antimicrobial activities in vitro by a twofold serial dilution technique.The bioactive evaluation showed that 3,5-bis(trifluoromethyl)phenyl benzimidazoles were comparably or even more strongly antibacterial and antifungal than the reference drugs Chloromycin,Norfloxacin,and Fluconazole.The combination of2,4-difluorobenzyl benzimidazole derivative 5l and its hydrochloride 7 respectively with the antibacterials Chloromycin,Norfloxacin,and the antifungal Fluconazole was more sensitive to methicillin-resistant MRSA and Fluconazole-insensitive A.flavus.In addition,the interaction of compound 5l with calf thymus DNA demonstrated that this compound could effectively intercalate into DNA to form a compound 5l-DNA complex that might block DNA replication and thereby exert good antimicrobial activity.     

Structure, formation, and dynamics of Mo(12) and Mo(16) oxothiomolybdenum rings containing terephtalate derivatives

The influence of rigid or semirigid dicarboxylate anions, terephtalate (TerP(2-)), isophtalate (IsoP(2-)), and phenylenediacetate (PDA(2-)) on the self-condensation process of the [Mo(2)O(2)S(2)](2+) dioxothio cation has been investigated. Three new molybdenum rings, [Mo(12)O(12)S(12)(OH)(12)(TerP)](2-) ([Mo(12)TerP](2-)), [Mo(16)O(16)S(16)(OH)(16)(H(2)O)(4)(PDA)(2)](4-) ([Mo(16)(PDA)(2)](4-)), and [Mo(16)O(16)S(16)(OH)(16)(H(2)O)(2)(IsoP)(2)](4-) ([Mo(16)(IsoP)(2)](4-)) have been isolated and unambiguously characterized in the solid state by single-crystal X-ray studies and in solution by various NMR methods and especially by diffusion-correlated NMR ((1)H DOSY) spectroscopy, which was shown to be a powerful tool for the characterization and speciation of templated molybdenum ring systems in solution. Characterization by FT-IR and elemental analysis are also reported. The dynamic and thermodynamic properties of both the sixteen-membered rings were studied in aqueous medium. Specific and distinct behaviors were revealed for each system. The IsoP(2-)/[Mo(2)O(2)S(2)](2+) system gave rise to equilibrium, involving mono-templated [Mo(12)IsoP](2-) and bis-templated [Mo(16)(IsoP)(2)](4-) ions. Thermodynamic parameters have been determined and showed that the driving-force for the formation of the [Mo(16)(IsoP)(2)](4-) is entropically governed. However, whatever the conditions (temperature, proportion of reactants), the PDA(2-)/[Mo(2)O(2)S(2)](2+) system led only to a single compound, the [Mo(16)(PDA)(2)](4-) ion. The latter exhibits dynamic behavior, consistent with the gliding of both the stacked aromatic groups. Stability and dynamics of both Mo(16) rings was related to weak hydrophobic or pi-pi stacking inter-template interactions and inner hydrogen-bond network occurring within the [Mo(16)(IsoP)(2)](4-) and [Mo(16)(PDA)(2)](4-) ions.     

NMR and theoretical study on the linking properties of peroxovanadium(V) complexes with the 3-aminomethyl-pyridine derivatives

To understand the substitution effects of 3-aminomethyl-pyridine on the reaction equilibrium, the interactions between a series of 3-aminomethyl-pyridine derivatives and peroxovanadium(V) complex [OV(O₂)₂(D₂O)]^?/[OV(O₂)₂(HOD)]^? in solution were explored by the combined use of multinuclear (¹H, ¹³C, and ⁵¹V) magnetic resonance spectroscopy together with HSQC in 0.15 M NaCl ionic medium for mimicking the physiological conditions. Some direct NMR data are given for the first time. The relative reactivity among the 3-aminomethyl-pyridine derivative ligands are N-(pyridin-3-ylmethyl)acetamide (1) ≈ N-(pyridin-3-ylmethyl)propionamide (2) > N-(pyridin-3-ylmethyl)pivalamide (3) > t-butyl(pyridin-3-ylmethyl)carbamate (4). The competitive coordination results in the formation of a series of new six-coordinate peroxovanadium species [OV(O₂)₂L]^? (L = 1–4). The results of density functional calculations indicated that the solvation effects play an important role in these reactions, providing a reasonable explanation on the relative reactivity of the 3-aminomethyl-pyridine derivatives.     

Investigations of intramolecular hydrogen bonding in three types of Schiff bases by 2H and 3H NMR isotope effects

Hydrogen bonding within the structures of three Schiff bases (1-3), obtained by condensation of 4-methoxy-, 5-methoxy- and 4,6-dimethoxysalicylaldehyde with methylamine, was investigated by measuring deuterium and tritium NMR isotope effects. The primary deuterium and tritium isotope effects (delta(XH)-delta(XD/T)) and secondary one-bond nitrogen deuterium effect appear to be very useful parameters for defining the character of intramolecular hydrogen bonds. The tritium isotope effects were also determined for nitrogen-hydrogen one-bond coupling constants for both 4-methoxy and 4,6-dimethoxy derivatives. These parameters are seen to be highly sensitive to hydrogen bond characteristics and can be used to distinguish localized and tautomeric hydrogen bonds.     

Complex formation between azacrown derivatives of dibenzylidenecyclopentanone and alkali-earth metal ions

The complex formation of 2,5-bis[4-(1,7,10,13-tetraoxa-4-azacyclopentadec-4-yl)benzylidene]cyclopentanone and several model compounds, prospective metal-sensitive fluorescent probes, with Mg²⁺, Ca²⁺, and Ba²⁺ ions in acetonitrile was studied. The azacrown derivatives of dibenzylidenecyclopentanone have two complex formation centers, azacrown cycle and carbonyl group. The sequence of binding to these sites is different for different ions. The efficient ejection of the Ca²⁺ and Ba²⁺ ions from their complexes with azacoronands was observed in the excited state, whereas in the case of the Mg²⁺ ion, this process occurred only partially.     

Antimicorbial effects of newly synthesized organotin(IV) and organolead(IV) derivatives

Triorganotin(IV) and triorganolead(IV) derivatives of the types Me₃Sn(SCZ) and Ph₃Pb(SCZ) (where SCZ^? is the anion of a semicarbanzone ligand) have been synthesized by substitution reactions of trimethyltin chloride and triphenyl-lead chloride with semicarbazones derived from heterocyclic ketones. The resulting complexes have been characterized by elemental analyses, molecualr weight determinations and conductivity measurements. The mode of bonding has been established on the basis of infrared and ¹H, ¹³C and ¹¹⁹Sn NMR spectroscopic studies. Some respresentative complexes have also been evaluated for their antimicrobial effects on different species of pathogenic fungi and bacteria; the results of these investigations have been reported in the present paper.     

Hysteresis effects of the interaction between serum albumins and silver nanoparticles

In recent years, nanomaterials have wide-ranging implications to a variety of areas, including chemistry and biology sciences, and the emerged new fields, nanochemistry and nanobiology, have received considerable attention. The latest studies show that the unique optical, electronic and magnetic properties make nanoparticles useful for applications in the fields of bio-analysis, diseases diagnosis and medicine[1—9]. With particular optoelectronic properties, the silver nanoparticles have…     

Volume and compressibility effects in the formation of metal-EDTA complexes

We used precise measurements of ultrasonic velocity and density to study the complexation of ethylendiaminetetraacetic acid (EDTA) with Mg²⁺, Ca²⁺, Sr²⁺, and Ba²⁺ at 25‡C and pH 12. From these measurements we obtained the changes in the molar concentration increment of the ultrasonic velocity δA, the apparent molar adiabatic compressibility δK_sΦ, and the apparent molar volume δV_Φ of complex formation. The hydration contributions δ(AV_h) to the volume effect of binding range from 39.6 to 46.6 cm³-mol^-1 while the hydration contribution to the adiabatic compressibility change in the binding, δ(δK_h), ranges from 103.9X 10^-4 to 131.1 X 10^-4 cm³-mol^-1-bar^-1. These data are interpreted in terms of dehydration of interacting molecules,i.e., transfer of water molecules from the hydration shells of cations and EDTA into the bulk water. The ratio δ(δV_h)/ δ(δV_h) is in the range 0.35 to 0.38 bar, indicating a dominant contribution from the dehydration of charged atomic groups in the volume and the compressibility effects of complex formation.     

Complexes of tantalum with triaryloxides: Ligand and solvent effects on formation of hydride derivatives

A family of tantalum compounds supported by the triaryloxide [R-L]³⁻ ligands are reported [H₃(R-L) = 2,6-bis(4-methyl-6-R-salicyl)-4-tert-butylphenol, where R = Me or ^tBu]. The reaction of H₃[Me-L] with TaCl₅ in toluene gave [(Me-L)TaCl₂]₂ (1). The [^tBu-L] analogue [(^tBu-L)TaCl₂]₂ (2) was synthesized via treatment of TaCl₅ with Li₃[^tBu-L]. A THF solution of LiBHEt₃ was added to 1 in toluene to provide [(Me-L)TaCl(THF)]₂ (3), while treatment of 2 with 2 equiv of LiBHEt₃ or potassium in toluene followed by recrystallization from DME resulted in formation of [M(DME)₃][{(^tBu-L)TaCl}₂(μ-Cl)] [M = Li (4a), K (4b)]. When the amount of MBHEt₃ (M = Li, Na, K) was increased to 5 equiv, the analogous reactions in toluene afforded [{(bit-^tBu-L)Ta}₂(μ-H)₃M] [M = Li(THF)₂ (5a), Na(DME)₂ (5b), K(DME)₂ (5c)]. During the course of the reaction, the methylene CH activation of the ligand took place. Dissolution of 5a in DME produced [{(bit-^tBu-L)Ta}₂(μ-H)₃Li(DME)₂] (6), indicating that the coordinated THF molecules are labile. When the 2/LiBHEt₃ reaction was carried out in THF, the ring opening of THF occurred to yield [(^tBu-L)Ta(OBuⁿ)₂]₂ (7) along with a trace amount of [Li(THF)₄][{(^tBu-L)TaCl}₂(μ-OBuⁿ)] (8). Treatment of 2 with potassium hydride in DME yielded [{(^tBu-L)TaCl₂K(DME)₂}₂(μ-OCH₂CH₂O)] (9), in which the ethane-1,2-diolate ligand arose from partial C-O bond rupture of DME. The X-ray crystal structures of 2, 3, 4, 5a, 6, 7, and 9 are described.     

99Tc NMR as a promising technique for structural investigation of biomolecules: theoretical studies on the solvent and thermal effects of phenylbenzothiazole complex

The phenylbenzothiazole compounds show antitumor properties and are highly selective. In this paper, the ⁹⁹Tc chemical shifts based on the (^99mTc)(CO)₃(NNO) complex conjugated to the antitumor agent 2‐(4′‐aminophenyl)benzothiazole are reported. Thermal and solvent effects were studied computationally by quantum‐chemical methods, using the density functional theory (DFT) (DFT level BPW91/aug‐cc‐pVTZ for the Tc and BPW91/IGLO‐II for the other atoms) to compute the NMR parameters for the complex. We have calculated the ⁹⁹Tc NMR chemical shifts of the complex in gas phase and solution using different solvation models (polarizable continuum model and explicit solvation). To evaluate the thermal effect, molecular dynamics simulations were carried, using the atom‐centered density matrix propagation method at the DFT level (BP86/LanL2dz). The results highlight that the ⁹⁹Tc NMR spectroscopy can be a promising technique for structural investigation of biomolecules, at the molecular level, in different environments. Copyright © 2014 John Wiley & Sons, Ltd.     

Ring current and anisotropy effects on OH chemical shifts in resonance-assisted intramolecular H-bonds

Ring current effects on resonance-assisted and intramolecularly bridged hydrogen bond protons for 10-hydroxybenzo[h]quinoline 1 and a number of related compounds were calculated and the through-space NMR shieldings (TSNMRS) obtained hereby visualized as iso-chemical-shielding surfaces (ICSS) of various size and direction. These calculations revealed that this through-space effect is comparably large (up to 2?ppm) dependent on the position of the intramolecularly bridged OH proton, and therefore, contribute considerably to the chemical shift of the latter making it questionable to use δ(OH)/ppm in the estimation of intramolecular hydrogen bond strength without taking this into account. Furthermore, the anisotropy effects of additional groups on the aromatic moiety (e.g. the carbonyl group in salicylaldehyde or in o-hydroxyacetophenone of ca. 0.6?ppm deshielding) should also be considered. These through-space effects need to be taken into account when using OH chemical shifts to estimate hydrogen bond strength.     

Solvent effects on chemical processes. 4. Complex formation between naphthalene and theophylline in binary aqueous-organic solvents

The standard free energy change for complex formation is written as a sum of effects arising from solvent-solvent interactions (the general medium effect), solvent-solute interactions (the solvation effect), and solute-solute interactions (the intersolute effect). The general medium effect is given by gA(–_o), where g is a curvature correction factor to the solvent surface tension , A is the change in surface area as the two solvent cavities containing the substrate (naphthalene) and ligand (theophylline) collapse into a single cavity containing the complex, and _o is the value of surface tcnsion at which there is no net solvophobic interaction; is defined to be the value appropriate to the equilibrium mean solvation shell composition. The solvation effect is modeled by equilibrium stoichiometric formation of solvated species. All data are related to the fully aqueous system to give _MG^o, the solvent effect on the free energy change, as an explicit function of solvent composition. Solvent effects on bimolecular association are related to solvent effects on the solubilities of the substrate, ligand, and complex. Approximation methods for interpreting such systems are described and are applied to the naphthalene-theophylline complex. It is shown that complex destabilization in mixed aqueous-organic solvents (relative to the fully aqueous system) may receive contributions from both the general medium and the solvation effects, and that these contributions can be quantitatively estimated.     

Photochemistry of 5-nitro-1,2-benzisothiazole derivatives: effects of substituents, solvents and excitation wavelength

3-R-5-Nitro-1,2-benzisothiazole derivatives (1, R = substituents) in solution, undergo photochemical isomerization to produce 2-R-5-nitro-1,2-benzothiazole derivatives. Here, generalizations and limitations by the substituent, solvent, and excitation wavelength for the photoisomerization reaction of 5-nitro-1,2-benzisothiazoles are reported.     

Substituent interaction effects in aromatic molecules in RP-HPLC with acetonitrile-water and tetrahydrofuran-water eluents

Summary Retention volumes of monosubstituted benzenes, benzoic acids, phenols and anilines have been measured in reversed-phase liquid chromatography. Buffered acetonitrile-water and tetrahydrofuran-water eluents were used with an octadecylsilylsilica adsorbent. From the net retention volumes a substituent interaction effect was calculated and described with the linear free energy relationship developed by Taft. The positive sign of the values of the -parameters, figuring in this relationship, was interpreted in terms of hydrogen bonding between the solutes and the eluent.