Surface-enhanced Raman scattering and adsorption studies of morphine on silver island film

In this work, surface-enhanced Raman spectroscopy (SERS), infrared adsorption (IR), normal Raman (NR) scattering as well as density functional theory (DFT) computational methods have been employed to investigate the adsorption and orientation of morphine on silver surface. The structure of morphine and its vibrational spectra were determined at B3LYP/6-31G(d) level, and the results were used in the assignment of the vibrational spectra. The calculated data showed fairly good agreement with both corresponding experimentally observed spectra. These results, along with the application of surface selection rules of SERS, suggest that the molecules had a charge transfer adsorption on Ag island film and both planes of its ‘T’ type structure had a rather perpendicular orientation to the substrate mainly via the lone-pair electrons of the oxygens.     

Cross-linking-induced permanently perpendicular helix orientation in surface-grafted polyglutamate films

Using a chemical cross-linking procedure, surface-grafted polyglutamate films with a permanently perpendicular helix orientation were prepared. A surface-grafted alpha-helical polyglutamate film containing polymerizable side groups was synthesized by ring-opening terpolymerization of 50 molar% gamma-methyl-L-glutamate N-carboxyanhydride (NCA), 30% gamma-stearyl-L-glutamate NCA and 20% gamma-4-vinylbenzyl-L-glutamate NCA initiated from a silicon substrate functionalized with primary amino groups. The average tilt angle of the end-grafted helices in this film is approximately 66 degrees , indicating a nearly parallel helix orientation with respect to the substrate surface. After swelling of the grafted terpolyglutamate film in stearyl methacrylate and subsequent radical cross-linking, the average helix tilt angle decreases to about 11 degrees, indicating an almost perpendicular helix orientation. The film thickness increases accordingly from 151 A before to approximately 390 A after cross-linking. Extensive solvent treatment of the cross-linked film shows that the perpendicular helix orientation is permanent.     

Spectral properties of TMPyP intercalated in thin films of layered silicates

The objective of this study was to investigate the spectral characteristics of tetracationic porphyrin dye (TMPyP), intercalated into films of three smectites. The smectites represented the specimens of high (Fluorohectorite; FHT), medium (Kunipia F montmorillonite; KF), and low layer charge (Laponite; LAP). Intercalation of TMPyP molecules was proven by XRD measurements. The molecular orientations of the dye cations were studied by means of linearly polarized ultraviolet-visible (UV-vis) and infrared (IR) spectroscopies. Both the UV-vis and the IR spectroscopy proved the anisotropic character of the films. The spectral analysis of the polarized UV-vis spectra and consequent calculations of tilting angles of the transition moments in the region of Soret band transitions were in the range of 25-35 degrees . The determined angles indicated that the molecular orientation of the dye cations was almost parallel to the surface of the silicates. Slightly higher values, determined for a FHT film, indicated either a slightly more tilted orientation of the dye cations or the change of molecular conformation after the intercalation of the dye. Quenching of TMPyP fluorescence was observed, resulting from the formation of bimolecular layer arrangements with sandwich-type assemblies of the dye molecules.     

Study of molecular aggregation of artificial amyloid in a langmuir monolayer by infrared spectroscopy

A synthesized peptidolipid (C18IIGLM-NH2) comprised of a single C18-saturated hydrocarbon chain connected to the amino acid sequence IIGLM terminated with the NH2 group was spread on water, which formed a stable Langmuir monolayer. The Langmuir and Langmuir-Blodgett (LB) films have been characterized by measurements of surface pressure-area (pi-A) and surface potential-area (DeltaV-A) isotherms and infrared multiple-angle incidence resolution spectrometry (MAIRS). The Langmuir monolayer had a significantly larger limiting molecular area than that of a similar molecule of C18IIGLM-OH, which was reported in our previous study. The surface dipole moment analysis coupled with the pi-A isotherm suggested that the C18IIGLM-NH2 monolayer was extraordinarily stiff and the fundamental structure of the monolayer was brought about before the monolayer compression. The infrared MAIRS analysis of the C18IIGLM-NH2 LB film revealed that the backbone structure of the monolayer was the 'antiparallel' beta sheet aligned parallel to the substrate. Since the C18IIGLM-OH LB film was made of 'parallel' beta sheet with a random orientation, it has been found that the present C18IIGLM-NH2 Langmuir monolayer has a largely different monolayer structure, although the chemical structures are slightly different from each other by the terminal group only.     

Molecular Orientation and Structural Characterization of Ultrathin Films of C12AzoNaph(1,4)C6N-SDS Studied by FT-IR and NIR-SERS Spectroscopies

IntroductionAzobenzene- containing long- chain fatty acidsand their ammonium amphiphiles have recentlyaroused a great interest of some researchersbecause of their promising photochromicproperties[1— 6 ] . In order to understand theinteresting physical properties the LB films withazo chromophores show,a structure- functionrelationship of the films must be explored.Thusfar,infrared spectroscopy has been usedextensively for the investigations of molecularaggregation,orientation and structuralch…     

Fibril-like aggregate formation of peptide carboxylate Langmuir films analyzed by surface pressure, surface dipole moment, and infrared spectroscopy

The fibril formation process of a synthetic peptidolipid compound in a Langmuir monolayer at the air-water interface has been analyzed by surface pressure and surface dipole moment-area isotherms, followed by infrared spectral analysis of related Langmuir-Blodgett films. Thus far, the analysis of randomly oriented molecular assemblies has been a difficult matter, especially for spectroscopic measurements. In the present study, the Langmuir film isotherms were discussed in detail, and they have readily been correlated to the infrared spectra. For the spectral analysis, infrared multiple-angle incidence resolution spectroscopy (MAIRS) was employed, which was compared to the results by conventional techniques. Since the peptide assemblies greatly responded to a metal surface, the reflection-absorption technique was not useful for our analysis. Instead, MAIRS was found to be powerful to reveal the anisotropic structure of the Langmuir films, and a disordered molecular architecture has been revealed via the molecular orientation analysis. As a result, the fibril-like aggregation formation process during the monolayer compression, which was suggested by previous topographical study, has been found to be due to the stiff domain formation in the Langmuir films.     

Structure and topography of molecular assemblies on solid substrates by infrared spectroscopy and scanning tunneling microscopy

Recently we have combined infrared spectroscopy and atomic resolution scanning tunneling microscopy (STM) to probe the local structure and intermolecular arrangement of molecules within thin films. IR spectroscopy provides spatially averaged information about orientation of the molecules with respect to the surface and about intermolecular arrangement within the crystallographic unit cell. STM data yields a local picture of molecular packing within the film. The requirements of an atomically flat (over distances of hundreds of angstroms) conducting substrate for the STM are fulfilled by an epitaxially grown film of gold on a cleaved mica substrate which also provides a good infrared reflective surface, enabling IR and STM measurements on identical samples. Systems investigated include Langmuir-Blodgett films of cadmium arachidate and self-assembled films of octadecyltrichlorosilane.     

Layer-by-layer electrostatic assembly with a control over orientation of molecules: anisotropy of electrical conductivity and dielectric properties

While forming layer-by-layer (LbL) electrostatic assembly of a magnetic organic molecule, namely, nickel phthalocyanine (NiPc), we apply a magnetic field. The field orients the magnetic moment of the molecules on a monolayer along the direction of magnetic field. Such an orientation of the molecules is then electrostatically immobilized with a monolayer of a polycation. By repeating the dipping cycle, we form LbL films with planar NiPc molecules facing a particular direction. With NiPc's moment perpendicular to the molecular plane, two types of LbL films were formed: (a) NiPc's molecular plane parallel to the substrate (moment is perpendicular) and (b) molecules perpendicular to the substrate and facing one particular direction, the direction of magnetic field. Such films, with the molecules lying either (a) parallel or (b) perpendicular to the substrate, provide unique systems to study anisotropy of optical, dielectric, and electrical characteristics in these planar organic molecules. The latter film responds to the polarization of incident beam in electronic absorption spectroscopy. Here we show methods to obtain an orientation of molecules in LbL films and study anisotropy of dielectric constant and conductivity of the molecules in ultrathin films.     

Alignment mechanism of a nematic liquid crystal on a pre-rubbed polyimide film with laser-induced periodic surface structure

A periodic surface structure was prepared on a pre-rubbed polyimide (PI) film surface with a pulsed UV laser polarized perpendicular to the rubbing direction. The experimental results demonstrate that the rubbing-induced molecular anisotropic orientation was relaxed by the pulsed laser irradiation, and the laser induced molecular orientation was perpendicular to the line of the laser-induced periodic structure. The dichroism of the anisotropy of molecular orientation increased with the increase of laser energy. Since the direction of the laser-induced molecular anisotropy was perpendicular to the surface groove direction of the pre-rubbed PI surface, the effects of surface microgroove and anisotropic molecular orientation of the PI chain on liquid crystal (LC) alignment can be distinguished from each other. LC alignment was investigated by evaluating the anchoring energy of the PI surface, which was calculated according to Berreman's theory using the twist angle of the LC in the cells. The experimental results demonstrate that the exact alignment direction of the LC molecules is determined by the relative strength of both factors.     

Molecular orientation of evaporated pentacene films on gold: alignment effect of self-assembled monolayer

Pentacene films deposited on self-assembled monolayers (SAMs) bearing different terminal functional groups have been studied by reflection-absorption IR, grazing angle XRD, NEXAFS, AFM, and SEM analyses. A film with pentacene molecules nearly perpendicularly oriented was observed on Au surfaces covered with an SAM of alkanethiol derivative of X-(CH2)(n)-SH, with X = -CH(3), -COOH, -OH, -CN, -NH(2), C(60), or an aromatic thiol p-terphenylmethanethiol. On the other hand, a film with the pentacene molecular plane nearly parallel to the substrate surface was found on bare Au surface. A similar molecular orientation was found in thinner ( approximately 5 nm) and thicker (100 nm) deposited films. Films deposited on different surfaces exhibit distinct morphologies: with apparently smaller and rod-shaped grains on clean bare Au surface but larger and islandlike crystals on SAM-modified surfaces. X-ray photoemission electron microscopy (X-PEEM) was used to analyze the orientation of pentacene molecules deposited on a SAM-patterned Au surface. With the micro-NEXAFS spectra and PEEM image analysis, the microarea-selective orientation control on Au was characterized. The ability to control the packing orientation in organic molecular crystals is of great interest in fabricating organic field effect transistors because of the anisotropic nature of charge transport in organic semiconducting materials.     

Alignment mechanism of a nematic liquid crystal on a pre-rubbed polyimide film with laser-induced periodic surface structure

A periodic surface structure was prepared on a pre-rubbed polyimide (PI) film surface with a pulsed UV laser polarized perpendicular to the rubbing direction. The experimental results demonstrate that the rubbing-induced molecular anisotropic orientation was relaxed by the pulsed laser irradiation, and the laser induced molecular orientation was perpendicular to the line of the laser-induced periodic structure. The dichroism of the anisotropy of molecular orientation increased with the increase of laser energy. Since the direction of the laser-induced molecular anisotropy was perpendicular to the surface groove direction of the pre-rubbed PI surface, the effects of surface microgroove and anisotropic molecular orientation of the PI chain on liquid crystal (LC) alignment can be distinguished from each other. LC alignment was investigated by evaluating the anchoring energy of the PI surface, which was calculated according to Berreman's theory using the twist angle of the LC in the cells. The experimental results demonstrate that the exact alignment direction of the LC molecules is determined by the relative strength of both factors.     

Pentacene films on Cu(119)

The molecular structure of thin pentacene film grown on a Cu(119) surface has been studied by near-edge X-ray absorption fine structure spectroscopy and scanning tunneling microscopy. The interaction between the π-molecular orbitals delocalized on the aromatic rings and the underlying copper substrate was deduced from XAS spectra. Pentacene molecules arrange with the main axis almost parallel with the Cu terraces according to the measured polarization dependence of the C 1s absorption spectra. For thickness exceeding 4 nm an upright arrangement of the molecules was observed with a dense herringbone-like ordering. The present study thus demonstrates that highly ordered pentacene films can be obtained on a Cu(119) vicinal surface both in a flat orientation for low coverages and in a bulk-like herringbone orientation for higher coverages.     

A polarised ATR study of structural orientation in dry and humid thin HPMC films

The structure of thin films of the polymer hypromellose (HPMC) have been investigated under dry and ambient humidity conditions using polarised attenuated total reflectance (ATR) infrared spectroscopy. In particular spectra were recorded in the C–H and O–H stretching regions for spin coated films deposited on silicon, germanium and zinc selenide internal reflection elements (IREs). A recent development in the field of polarised ATR has demonstrated a simple quantitative relationship between complementary s- and p-polarised spectra of orientationally ordered monolayer films, which yields the spectrum uniquely in the direction perpendicular to the surface, the “z-polarised” spectrum. As well as recording s- and p-polarised spectra this work examines the z-spectra derived from the experimental s- and p-polarisation spectra. For the C–H band all three polarisation spectra reveal no change in the preferred orientation of the transition dipole between humid and dry films on germanium or silicon but with a marginally increased orientation parallel to the surface on zinc selenide. On the other hand the O–H band spectra show an increased orientation of the transition dipole parallel to the surface for both humid and dried films for all three IREs when compared to the corresponding C–H band spectra. This effect was greater in the dried film, i.e. with free water removed, than in the humid film.     

Structure and phase transition in self-assembled films of an anti-ferroelectric liquid crystal studied by two-dimensional correlation FTIR spectroscopy

The FTIR spectra were measured for a self-assembled film of the anti-ferroelectric liquid crystal (AFLC) molecules over a temperature range of 40-150 degrees C. The frequency and intensity variations of the infrared spectra were discussed in terms of changes in molecular orientation, conformation and intra- and/or inter-molecular interaction during phase transitions. The two-dimensional (2d) correlation analysis revealed that two hydrocarbon chains have different orientation behaviors, the shorter hydrocarbon chain is parallel to molecular long axis and the longer one is perpendicular to it. The splitting of the C=O stretching band indicated that the s-cis and the s-trans conformers of the ester group coexist in the self-assembly film. During the phase transitions, in mesogen part the C=O group adjacent to the chiral part is first response with temperature changing, following the C=O group between two phenyl rings, and eventually the phenyl rings; and the respondence with temperature of methyl is slower than that of methylene in alkyl chains.     

Orientation control of ferroelectric polymer molecules using contact-mode AFM

We have developed an orientation control technique for polymer molecules utilizing contact-mode atomic force microscopy (AFM). In this technique, the molecular chains were directly modified by scanning an AFM cantilever tip in contact with the film surface at the temperature just below its melting point. We call this process “modification scan”. Here, we applied this technique to poly(vinylidenefluoride-trifluoroethylene) (P(VDF-TrFE)) thin films on graphite and glass. We prepared a 75-nm thick copolymer crystalline film on graphite whose lamellar plane was perpendicular to the substrate (edge-on), and also prepared a film of the same thickness on glass whose lamellar plane was parallel to the substrate (flat-on). After applying this technique on both films, molecular chains were stretched and aligned to the modification scan direction, and new edge-on crystals were obtained, whose lamellar planes were well-aligned perpendicular to the modification scan direction.     

Unique molecular orientation in a smectic liquid crystalline polymer film attained by surface-initiated graft polymerization

Liquid crystalline (LC) polymer brushes containing a mesogenic azobenzene (Az) moiety are synthesized on a quartz or silicon substrate by surface-initiated atom transfer radical polymerization. The molecular orientation of the Az units and the LC properties in the grafted chains are evaluated by UV-vis spectroscopy, polarized optical microscopy, and grazing incidence X-ray diffraction measurements. The Az side chains of the grafted chains exhibited a smectic LC phase in which the smectic layers are oriented perpendicular to the substrate with a parallel orientation of the mesogens. In contrast, a spincast film of the identical LC polymer without grafting to the surface shows layer structures parallel to the substrate. A drastic effect of tethering one end to the substrate on the LC orientation is demonstrated.     

Structures of palmitoyl-L and DL-lysine monolayers at the air-water interface--polarization modulation infrared reflection absorption spectroscopic study

Polarization modulation infrared reflection absorption spectroscopy (PM-IRAS) was applied to measure the IR spectra of palmitoyl-DL-lysine (L-PL) and palmitoyl-DL-lysine (DL-PL) at the air-water interface. The spectra in the amide I and II regions were simulated by using the extinction coefficients of the amide I and II bands of L-PL and DL-PL determined by the analyses of the IR external reflection spectra of the Langmuir-Blodget (LB) films prepared on a Ge plate (Yasukawa et al. J. Mol. Struct. 2005, 735-736, 53), indicating the angle between the plane of the secondary amide group (the amide plane) and the surface normal in the L-PL monolayer to be about 20 degrees and the angle in the DL-PL monolayer to be about 37 degrees. Comparison of the tilt angles with the corresponding angles in the LB films (about 20 degrees for the LB film of L-PL; about 49 degrees for the LB film of DL-PL) indicated that, upon being transferred to the solid substrate from the air-water interface, the L-PL monolayer keeps the orientation of the amide plane virtually unchanged, while the DL-PL monolayer changes the orientation appreciably to a horizontal direction. The orientation change of the amide plane was interpreted as due to the accommodation of irregularly oriented palmitoyl groups into the LB films of DL-PL on the solid substrate.     

Determination of the molecular orientation of very thin films on solid substrates: surface liquid crystal layers and rubbed polyimide films

The molecular orientation of very thin films on solid substrates can be determined quantitatively by measuring the polarized infrared (IR) absorption spectra of samples as a function of angle of incidence. The quantitative molecular orientation is derived by fitting the incident angle dependence and the dichroic ratio with theoretical calculations. We applied this method to a technologically important system: liquid crystal (LC)/rubbed polyimide film. To understand the alignment mechanism of LC molecules in contact with rubbed polyimide films, we have quantitatively determined the molecular orientation of rubbed polyimide films and a surface LC layer in contact with a rubbed polyimide film. In this paper two relations are discussed: (1) correlation between the inclination angle of polyimide backbone structures in rubbed films and the pretilt angle of bulk LC in contact with them, and (2) relation among the molecular orientation of a rubbed polyimide film and those of surface and bulk LC layers in contact with it.     

A new spectroscopic tool for surface layer analysis: multiple-angle incidence resolution spectrometry

A series of application studies of infrared multiple-angle incidence resolution spectrometry (IR-MAIRS) have been reported since it was first proposed as a unique technique for analyzing molecular orientation in thin films on an optically transparent substrate, and both expected and unexpected benefits of IR-MAIRS have been revealed. In this review, cutting-edge application studies are summarized systematically, and the principle of MAIRS is explained from a new point of view.     

Buried interfacial layer of highly oriented molecules in copper phthalocyanine thin films on polycrystalline gold

The growth of copper phthalocyanine thin films evaporated on polycrystalline gold is examined in detail using near edge x-ray absorption fine structure spectroscopy and surface sensitive x-ray photoemission spectroscopy. The combination of both methods allows distinguishing between the uppermost layers and buried interface layers in films up to approximately 3 nm thickness. An interfacial layer of approximately 3 ML of molecules with an orientation parallel to the substrate surface was found, whereas the subsequent molecules are perpendicular to the metal surface. It was shown that even if the preferred molecular orientation in thin films is perpendicular, the buried interfacial layer can be oriented differently.