Crystallization and Preliminary X-ray Diffraction Study of Purine Nucleoside Phosphorylase from the Thermophilic Bacterium <Emphasis Type="Italic">Thermus thermophilus</Emphasis> Strain HB27

Recombinant purine nucleoside phosphorylase from the thermophilic Thermus thermophilus strain encoded by the TT_C0194 gene was purified to homogeneity. The crystallization conditions for the enzyme were found by the vapor-diffusion technique. The crystals of the enzyme suitable for X-ray diffraction were grown under microgravity conditions by the capillary counter-diffusion method. The crystals belong to sp. gr. P2₁2₁2₁ and have the following unit-cell parameters: a = 89.9 Å, b = 121.0 Å, c = 215.7 Å, α = β = γ = 90°. The X-ray diffraction data set suitable for the determination of the three-dimensional structure of purine nucleoside phosphorylase was collected from the grown crystals at the SPring-8 synchrotron facility to 2.5 Å resolution.     

Crystallization and preliminary X-ray diffraction study of recombinant ribokinase from <Emphasis Type="Italic">Thermus Species</Emphasis> 2.9

Ribokinase from a thermophilic strain of Thermus species 2.9 belonging to the carbohydrate ribokinase family (EC 2.7.1.15) was isolated, purified, and crystallized. The crystallization conditions were found by the vapor-diffusion technique and were then optimized to apply the capillary counter-diffusion technique. The X-ray diffraction data set was collected from the crystals, which were grown by the counter-diffusion technique, at the SPring-8 synchrotron radiation facility to 2.87 Å resolution. The crystals belong to sp. gr. P12₁1 and have the following unit-cell parameters: a = 81.613 Å, b = 156.132 Å, c = 87.714 Å, α = γ = 90°, β = 103.819°. The X-ray diffraction data set is suitable for determining the three-dimensional structure of the protein by the molecular-replacement method.     

Growth and crystal structure of binary molybdate CsFe(MoO<Subscript>4</Subscript>)<Subscript>2</Subscript>

CsFe(MoO₄)₂ single crystals have been grown by solution-melt crystallization with a charge-to-solvent ratio of 1: 3 (with Cs₂Mo₃O₁₀ used as a solvent). The crystal structure of this compound has been refined by X-ray diffraction (X8 APEX automatic diffractometer, MoK _α radiation, 356 F(hkl), R = 0.0178). The trigonal unit cell has the following parameters: a = b = 5.6051(2) Å, c = 8.0118(4) Å, V = 217.985(15) ų, Z = 1, ρ_calc = 3.875 g/cm³, and sp. gr. P \(\bar 3\) m1. The structure is composed of alternating layers of FeO₆ octahedra (with MoO₄ tetrahedra attached by sharing vertices) and CsO₁₂ icosahedra.     

Magnetization,paramagnetic susceptibility,and electrical conductivity of layered TIMnS<Subscript>2</Subscript> and TIMnSe<Subscript>2</Subscript> antiferromagnets

TlMnS₂ and TlMnSe₂ crystals have been synthesized by the method of solid-state reaction from chemical elements weighted in the stoichiometric ratio. X-ray, magnetic, and electric studies have been performed. It is established that the TlMnS₂ compound crystallizes in the tetragonal structure with the unit-cell parameters a = 7.74 Å, c = 30.60 Å, Z = 20, and ρ_x = 6.40 g/cm³; TlMnSe₂ crystallizes in the hexagonal structure with the unit-cell parameters a = 6.53 Å, c = 23.96 Å, Z = 8, and ρ_x = 6.71 g/cm³. TlMnS₂ and TlMnSe₂ are semiconductors and exhibit an antiferromagnetic character of exchange interaction.     

Investigation of the crystallization features,atomic structure,and microstructure of chromium-doped monticellite

A series of Cr⁴⁺:CaMgSiO₄ single crystals is grown using floating zone melting, and their microstructure, composition, and crystal structure are investigated. It is shown that regions with inclusions of second phases, such as forsterite, akermanite, MgO, and Ca₄Mg₂Si₃O₁₂, can form over the length of the sample. The composition of the single-phase regions of the single crystals varies from the stoichiometric monticellite CaMgSiO₄ to the solid solution Ca_{(1 ? x)}Mg_{(1 + x)}SiO₄(x = 0.22). The Cr:(Ca_0.88Mg_0.12)MgSiO₄ crystal is studied using X-ray diffraction. It is revealed that, in this case, the olivine-like orthorhombic crystal lattice is distorted to the monoclinic lattice with the parameters a = 6.3574(5) Å, b = 4.8164(4) Å, c = 11.0387(8) Å, β = 90.30(1)^o, Z = 4, V = 337.98 ų, and space group P2₁/c. In the monoclinic lattice, the M(1) position of the initial olivine structure is split into two nonequivalent positions with the center of symmetry, which are occupied only by Mg²⁺ cations with the average length of the Mg-O bond R _av = 2.128 Å. The overstoichiometric Mg²⁺ cations partially replace Ca²⁺ cations (in the M(2) position of the orthorhombic prastructure) with the average bond length of 2.347 Å in the [(Ca,Mg)-O₆] octahedron. The average distance in SiO₄ distorted tetrahedra is 1.541 Å.     

Crystal structure and microtwinning of monoclinic La<Subscript>3</Subscript>SbZn<Subscript>3</Subscript>Ge<Subscript>2</Subscript>O<Subscript>14</Subscript> crystals of the langasite family

The crystal structure of monoclinic La₃SbZn₃Ge₂O₁₄ crystals from the langasite family is determined by X-ray diffraction analysis [a = 5.202(1) Å, b = 8.312(1) Å, c = 14.394(2) Å, β = 90.02(1)°, sp. gr. A2, Z = 2, and R/R _w = (5.2/4.6)%]. The structure is a derivative of the Ca₃Ga₂Ge₄O₁₄-type structure (a = 8.069 Å, c = 4.967 Å, sp. gr. P321, Z = 1). The crystal studied is a polysynthetic twin with the twin index n = 2, whose monoclinic components are related by pseudomerohedry by a threefold rotation axis of the supergroup P321.     

Crystal structure of the new radical cation salt (<Emphasis Type="Italic">DOET</Emphasis>)<Subscript>4</Subscript>[Fe(CN)<Subscript>5</Subscript>NO]<Subscript>1.25</Subscript>(C<Subscript>6</Subscript>H<Subscript>5</Subscript>Cl)<Subscript>0.75</Subscript>

A new radical cation salt based on 4,5-(1,4-dioxanediyl-2,3-dithio)-4′,5′-ethylenedithiotetrathiafulvalene (DOET) with the photochromic anion [Fe(CN)₅NO]^2?, namely, (DOET)₄[Fe(CN)₅ NO]_1.25(C₆H₅Cl)_0.75, is synthesized. Single crystals of this salt are studied using X-ray diffraction [a = 10.398(2) Å, b = 11.168(2) Å, c = 18.499(4) Å, α = 103.14(3)°, β = 92.80(3)°, γ = 106.02(3)°, V = 1996.3(7) ų, space group \(P\bar 1\), and Z = 1]. In the structure, radical cation layers alternate with anion layers along the c axis. The centrosymmetric dimers are formed by DOET radical cations in the donor layer with packing of the β type. Like the vast majority of DOET-based salts, the new salt possesses semiconductor properties.     

Absolute structure of La<Subscript>3</Subscript>Ga<Subscript>5</Subscript>SiO<Subscript>14</Subscript> langasite crystals

The absolute structure of La₃Ga₅SiO₁₄ piezoelectric crystals (a = 8.1746(6) Å, c = 5.1022(4) Å, space group P321, Z = 1) with the positive sense of rotation of the plane of polarization is refined using X-ray diffraction analysis (R = 1.37%, R _w = 1.71%, 2413 unique reflections, max sinθ/λ = 1.15 Å^?1). The contributions from the anharmonicity of thermal vibrations of lanthanum atoms are calculated with the use of the components of the third-and fourth-rank tensors. It is demonstrated that these contributions can have a significant effect.     

Synthesis and an X-ray diffraction study of Rb<Subscript>2</Subscript>[(UO<Subscript>2</Subscript>)<Subscript>2</Subscript>(C<Subscript>2</Subscript>O<Subscript>4</Subscript>)<Subscript>3</Subscript>]

The synthesis and X-ray diffraction study of compound Rb₂[(UO₂)₂(C₂O₄)₃], which crystallizes in the monoclinic crystal system, are performed. The unit cell parameters are as follows: a = 7.9996(6) Å, b = 8.8259(8) Å, c = 11.3220(7) Å, β = 105.394(2)°, and V = 770.7(1) ų; space group P2₁/n, Z = 2, and R ₁ = 0.0271. [(UO₂)₂(C₂O₄)₃]^2? layers belonging to the AK _0.5 ⁰² T ¹¹ crystal chemical group of uranyl complexes (A = UO ₂ ²⁺ , K ⁰² = C₂O ₄ ^2? , and T ¹¹ = C₂O ₄ ^2? ) are uranium-containing structural units of the crystals. The layers are connected with outer-sphere rubidium cations by electrostatic interactions.     

X-ray diffraction study of thiocarbamide hydrochloride

Thiocarbamide hydrochloride single crystals forming a salt with the composition [(NH₂)₂CSH]⁺Cl^? are studied by the X-ray diffraction method. The tetragonal crystals have the unit-cell parameters a = 7.556(1) Å and c = 18.329(3) Å, V = 1046.5 ų, Z = 8, ρ_calcd = 1.436 g/cm³, sp. gr. P4₁2₁2, and R = 0.050. Each chloride anion in the crystal forms five hydrogen bonds with thee different cations.     

Crystal structure of <Emphasis Type="Italic">p</Emphasis>-carboxyphenylhydrazone benzoylacetone

The crystal structure of p-carboxyphenylhydrazone benzoylacetone is determined. The crystals are monoclinic, a = 13.614(4) Å, b = 11.388(2) Å, c = 20.029(6) Å, β = 104.82(2)°, V = 2339(9) ų, Z = 8, space group C2/c, and R = 0.038 for 1622 reflections with I > 2σ(I). The crystal is built of C₁₇H₁₄N₂O₄ neutral molecules that are linked by O-H?O hydrogen bonds between the carboxyl groups into centrosymmetric pseudodimers. The effect of carboxylation of the phenylhydrazone fragment and the position of the carboxyl group on the molecular packing in the crystal is determined. The N(1)-H(1N)?O(1) intramolecular hydrogen bond (N-H, 0.94 Å; H?O, 1.87 Å; N?O, 2.59 Å; and the N-H?O angle, 133°) is formed in the molecule.     

Accurate Refinement of the Crystal Structure of Ba<Subscript>3</Subscript>TaGa<Subscript>3</Subscript>Si<Subscript>2</Subscript>O<Subscript>14</Subscript> from Langasite Family and Analysis of Structural Transformations Due to Isomorphous Cation Substitutions

An accurate structure analysis of a Ba₃TaGa₃Si₂O₁₄ single crystal from langasite family was performed using four X-ray diffraction data sets collected on a diffractometer equipped with a CCD area detector (sp. gr. P321, Z = 1, sinθ/λ ≤ 1.35 Å^–1; at 295 K a = 8.516(1) Å, c = 5.1910(6) Å, R/wR = 0.58/0.56%, Δρ_min/Δρ_max =–0.73/0.42 e/ų, 4414 independent reflections; at 106 K a = 8.5109(9) Å, c = 5.1861(9) Å, R/wR = 0.75/0.86%, Δρ_min/Δρ_max =–0.81/1.06 e/ų, 4382 reflections). The distinguishing feature of the Ba₃TaGa₃Si₂O₁₄ structure is a strong disorder of the Ga atom at the 3f site. Structural transformations in the series of Сa₃TaGa₃Si₂O₁₄–Sr₃TaGa₃Si₂O₁₄–Ba₃TaGa₃Si₂O₁₄–Ba₃TaFe₃Si₂O₁₄ crystals were analyzed.     

Molecular structures of chalcone podands: A prognosis of photoinduced transformations in the crystals

A series of chalcone podands with the propenone group in the ortho position of the bridging aryl substituent with respect to the oxyethylene fragment is synthesized. The influence of the preorganization of the chalcone podand molecules in crystals on their ability to participate in topochemical reactions is investigated. From analyzing the X-ray structural data, the highest probability of the solid-state photochemical [2 + 2]cycloaddition is predicted for podands with phenyl substituents and the oxyethylene fragment containing two or three oxygen atoms. The X-ray structural data for the chalcone podand C₃₂H₂₆O₄ (3a) are as follows: a = 7.904(9) Å, b = 14.92(2) Å, c = 21.30(3) Å, β = 91.7(1)°, monoclinic system, space group P2₁/c, Z = 4, V = 2510(5) ų, ρ = 1.26 g/cm³, and R = 0.046; C₃₄H₃₀O₅ (3b): a = 15.738(9) Å, b = 11.889(2) Å, c = 15.0830(15) Å, β = 105.47(14)°, monoclinic system, space group C2/c, Z = 4, V = 2720.0(9) ų, ρ = 1.266 g/cm³, and R = 0.0418; C₃₂H₂₄N₂O₈ (4a): a = 17.9416(18) Å, b = 10.9703(8) Å, c = 41.699(2) Å, β = 105.970(11)°, monoclinic system, space group P2₁/c, Z = 4, V = 2781.4(5) ų, ρ = 1.348 g/cm³, and R = 0.0426; C₃₆H₃₂N₂O₁₀ (4c): a = 7.6286(5)Å, b = 17.9398(10) Å, c = 11.5890(3)Å, β = 95.287(4)°, monoclinic system, space group P2₁/n, Z = 2, V = 1579.27(14) ų, ρ = 1.372 g/cm³, and R = 0.0377; and C₂₈H₂₂O₆ (5a): a = 15.6032(10) Å, b = 8.1131(5) Å, c = 17.7334(11) Å, β = 91.381(5)°, monoclinic system, space group C2/c, Z = 4, V = 2244.2(2) ų, ρ = 1.345 g/cm³, and R = 0.0309.     

Structure and some properties of [UO<Subscript>2</Subscript>(C<Subscript>5</Subscript>H<Subscript>12</Subscript>N<Subscript>2</Subscript>O)<Subscript>5</Subscript>](ClO<Subscript>4</Subscript>)<Subscript>2</Subscript>

Compound [UO₂(C₅H₁₂N₂O)₅](ClO₄)₂ is synthesized and characterized by thermogravimetry, IR spectroscopy, and X-ray diffraction. The compound crystallizes in the monoclinic crystal system; a = 15.2985(9) Å, b = 26.9676(15) Å, c = 20.6962(11) Å, β = 100.697(1)°, space group P2₁/c, Z = 8, and R = 0.0445. Discrete [UO₂(C₅H₁₂N₂O)₅]²⁺ groups belonging to the AM ₅ ¹ crystal chemical group of uranyl complexes (A = UO ₂ ²⁺ and M ¹=C₅H₁₂N₂O) are uranium-containing structural units of the crystals.     

Crystallization and preliminary X-ray diffraction analysis of recombinant phosphoribosylpyrophosphate synthetase from the <Emphasis Type="Italic">Thermophilic thermus</Emphasis> thermophilus strain HB27

Phosphoribosylpyrophosphate synthetases (PRPP synthetases) are among the key enzymes essential for vital functions of organisms and are involved in the biosynthesis of purine and pyrimidine nucleotides, coenzymes, and the amino acids histidine and tryptophan. These enzymes are used in biotechnology for the combined chemoenzymatic synthesis of natural nucleotide analogs. Recombinant phosphoribosylpyrophosphate synthetase I from the thermophilic strain HB27 of the bacterium Thermus thermophilus (T. th HB27) has high thermal stability and shows maximum activity at 75°С, due to which this enzyme holds promise for biotechnological applications. In order to grow crystals and study them by X-ray crystallography, an enzyme sample, which was produced using a highly efficient producer strain, was purified by affinity and gel-filtration chromatography. The screening of crystallization conditions was performed by the vapor-diffusion technique. The crystals of the enzyme suitable for X-ray diffraction were grown by the counter-diffusion method through a gel layer. These crystals were used to collect the X-ray diffraction data set at the SPring-8 synchrotron radiation facility (Japan) to 3-Å resolution. The crystals belong to sp. gr. P2₁ and have the following unitcell parameters: a = 107.7 Å, b = 112.6 Å, c = 110.2 Å, α = γ = 90°, β = 116.6°. The X-ray diffraction data set is suitable for determining the three-dimensional structure of the enzyme at 3.0-Å resolution.     

Synthesis and structure of methyl 8-allyl-6-bromo-2-methyl-1,2,3,4-tetrahydroquinoline-4-carboxylate

The compound C₁₅H₁₈NO₂Br was synthesized and characterized by X-ray diffraction. The crystals belong to the monoclinic system, sp. gr. P2₁/n, a = 8.913(2) Å, b = 23.637(6) Å, c = 13.892(3) Å, β = 90.31(2)°, Z = 8, V = 2926.8(12) ų, ρ_calc = 1.472 g/cm³. The bond lengths and bond angles in two molecules are equal within an experimental error and are typical of this class of compounds. The conformational differences of the saturated heterocyclic and methoxycarbonyl fragments of the molecules result in the presence of two crystallographically independent molecules in the crystal structure.     

Low-temperature X-ray diffraction studies of [(CH<Subscript>3</Subscript>)<Subscript>2</Subscript>NH<Subscript>2</Subscript>]<Subscript>5</Subscript>Cd<Subscript>3</Subscript>Cl<Subscript>11</Subscript> crystals

[(CH₃)₂NH₂]₅Cd₃Cl₁₁ crystals are grown by the method of isothermal evaporation from saturated aqueous solutions containing dimethylamine and cadmium chlorides, [(CH₃)2NH₂]Cl and CdCl_2.5H₂O. The crystal grown are studied by the X-ray diffraction method. It is established that the crystals are orthorhombic with the unit-cell parameters at room temperature a = 18.115 ± 0.004 Å, b = 11.432 ± 0.002 Å, and c = 15.821 ± 0.003 Å. The unit-cell parameters a, b, and c of the [(CH₃)₂NH₂]₅Cd₃Cl₁₁ crystals are measured as functions of temperature in the temperature range 100–320 K. The data obtained were used to determine the thermal expansion coefficients along the main crystallographic axes. The temperature curves of the unit-cell parameters and thermal expansion coefficients showed pronounced anomalies in the vicinity of the temperatures T ₁ = 120, T ₂ = 150, and T ₃ = 180 K corresponding to the phase transitions in the [(CH₃)₂NH₂]₅Cd₃Cl₁₁ crystals. The crystals are also characterized by a pronounced anisotropy of thermal expansion.     

Crystal structure and spectral characteristics of 2,4,7-trinitro-9-fluorenone

The crystal structure of 2,4,7-trinitro-9-fluorenone C₁₃H₅N₃O₇ is determined by X-ray diffraction analysis. The crystals are monoclinic, a = 4.024(1) Å, b = 16.763(3) Å, c = 18.250(4) Å, β = 96.32(3)°, V = 1223.6(5) ų, Z = 4, space group P2₁/c, and R = 0.0640 for 605 reflections with I > 2σ(I). The crystal is built of planar isolated molecules. The compound is characterized using IR and electronic absorption spectroscopy.     

Unclassical hydrogen bonds of C—H⋅<Emphasis Type="Italic">s</Emphasis>O and C—H⋅<Emphasis Type="Italic">s</Emphasis>N in the crystals of 2-amino-3-cyano-4-(3,4-dichlorophenyl)-5-oxo-1,4,5,6-tetrahydro-4H-pyrano[2,3-<Emphasis Type="Italic">d</Emphasis>]pyrimidine

The 2-amino-3-cyano-4-(3,4-dichlorophenyl)-5-oxo-1,4,5,6-tetrahydro-4H-pyrano[2,3-d] pyrimidine (1, C₁₇H₁₅Cl₂N₅O₃) was synthesized and characterized by IR,¹H NMR and elemental analysis. The molecular structure of1 was further studied by using X-ray crystallography. The crystals of compound1 are triclinic, space groupP-1,a = 6.0090(4) Å,b = 10.4056(7) Å,c = 15.6021(11) Å, α = 70.983(4), β = 84.056(6), γ = 84.611(6),Z = 2,V = 915.47(11) ų. Two types of unclassical hydrogen bonds C–H?sO and C–H?sN were presented in the crystals. In addition, there were classical hydrogen bonds in the crystal structure.     

Growth and structure of La<Subscript>3</Subscript>Zr<Subscript>0.5</Subscript>Ga<Subscript>5</Subscript>Si<Subscript>0.5</Subscript>O<Subscript>14</Subscript> crystals

The complete X-ray structure determination of Czochralski grown La₃Zr_0.5Ga₅Si_0.5O₁₄ single crystals with the Ca₃Ga₂Ge₄O₁₄ structure is performed (sp. gr. P321, a = 8.226(1) Å, c = 5.1374(6) Å, Z = 1, Mo K_α1 radiation, 1920 crystallographically independent reflections, R = 0.0166, R_w = 0.0192). The absolute structure is determined. It is shown that possible transition of some of La atoms (～1.2%) from the 3e to 6g position may give rise to the formation of structural defects.