Theoretical and experimental study of molecular structure and vibrational spectra of <Emphasis Type="Italic">N</Emphasis>-(2-pyridylmethyl)-2-pyrazinecarboxamide

N-(2-Pyridylmethyl)-2-pyrazinecarboxamide was prepared and its crystal structure was investigated by X-ray analysis. The compound crystallizes in the triclinic space group \(P{\bar 1}\) with a = 4.262(3), b = 12.117(9), c = 20.840(18) Å, α = 91.802(6), β = 89.834(7), γ = 91.845(6)°, V = 1075.2(16) ų, Z = 4, and D = 1.323?Mg/m³. The structure was solved by direct method and refined to R = 0.0699 and wR ₂ = 0.1268 by full matrix anisotropic least-squares method. Using the Hartree-Fock and density functional method (B3LYP) with 6-31G(d) basis set, the molecular geometry and vibrational frequencies of the title compound has been investigated and compared with experimental ones from experimental studies. The optimized bond lengths obtained by RHF method and bond angles obtained by B3LYP method show better agreement with the experimental values. The vibrations computed of the title compound by the RHF and DFT methods are in good agreement with the observed IR spectra data.     

RuN2分子结构和振动光谱的理论研究

使用钌原子相对论有效原子实势LanL2dz和密度泛函理论B3LYP方法对RuN2分子结构与分子光谱进行理论研究。结果表明RuN2分子基态为线性C∞v端配结构,基态电子态为3△,平衡几何为RRu-N=0.1910 nm,RN-1=0.1120 nm。同时首次计算给出各种稳定结构的振动频率,红外强度,拉曼活性与退极化率和偶极矩。     

Theoretical study of molecular structure and vibrational spectra of 1,4-dihydroxyanthraquinone

Molecular structure and vibrational spectra of 1,4-dihydroxyanthraquinone (1,4-DAQ) are studied theoretically and experimentally. FT-infrared and Raman spectra of 1,4-DAQ are recorded in solid phase in regions of 4000-400 and 3500-100 cm(-1), respectively. The geometry of 1,4-DAQ is optimized by B3LYP and B3PW91 methods, and the most stable structure with C2v point group is found. The harmonic vibration frequencies, infrared intensities, and the Raman scattering activities of the compound are calculated, analyzed, and compared with experimental data. Our calculated frequencies agree well with the experimental results.     

An experimental and theoretical study of the molecular structure and vibrational spectra of iodotrimethylsilane (SiIMe3)

The gas-phase molecular structure of iodotrimethylsilane (ITMS) has been determined from electron diffraction data. Infrared and Raman spectra have been completely assigned. The experimental work is supported by ab initio HF and MP2 calculations for the gas-phase structure determination and DFT(B3LYP) calculations, combined with Pulay's SQM method, for the vibrational spectra data.     

A new chromium (III) complex containing N-(2-pyridylmethyl)-2-pyrazinecarboxamide, (NPyPzCa): Synthesis,molecular and crystal structure and theoretical electron density analysis

The chromium (III) complex [Cr(NPyPzCa)Cl₂(H₂O)].(CH₃)₂O (1) (NPyPzCa stands for N-(2-pyridylmethyl)-2-pyrazinecarboxamide) has been synthesized and characterized by single crystal X-ray diffraction. The Cr(III) atom exhibits an octahedral geometry due to the coordination of three donor atoms from carboxamide ligand, two chlorine atoms and one water molecule. There is O–H?O hydrogen bonds and also π–π interactions between adjacent pyridine and ?pyrazine rings that seem to be effective in the stabilization of the crystal packing. The ?topological and energetic properties of the electron density distribution of all the metal–ligand ?bonding interactions in this complex have also been calculated and studied at ? several DFT levels. According to the results, metal–ligand bonding interactions belong (from the topological and energetic point of view) to new interactions that represent a mix of closed-shell (ionic) and shared (covalent) characters.     

Theoretical studies of molecular structure and vibrational spectra of melaminium citrate

The molecular geometry and vibrational frequencies of melaminium citrate in the ground state have been calculated using the Hartree-Fock (HF) and density functional method (B3LYP) with 6-31G(d) basis set. The optimized geometric bond lengths and bond angles obtained by using HF and density functional theory (DFT, B3LYP) show the best agreement with the experimental data. Comparison of the observed fundamental vibrational frequencies of melaminium citrate and calculated results by density functional B3LYP and Hartree-Fock methods indicate that B3LYP is superior to the scaled Hartree-Fock approach for molecular vibrational problems.     

Theoretical studies of molecular structure and vibrational spectra of O-ethyl benzoylthiocarbamate

O-Ethyl benzoylthiocarbamate has been synthesized and characterized by elemental analysis and FT-IR. The crystal structure was determined by X-ray diffraction analysis. Title compound crystallizes in the orthorhombic space group Pna2(1), with Z=4. Unit cell parameters a=9.941(3)A, b=9.352(3)A, c=10.962(3)A and V=1019.1(5)A(3). The molecular geometry and vibrational frequencies of O-ethyl benzoylthiocarbamate in the ground state has been calculated using the Hartree-Fock and density functional using Becke's three-parameter hybrid method with the Lee, Yang, and Parr correlation functional (B3LYP) methods with 3-21G and 6-31G(d) basis sets. The computational frequencies are in good agreement with the observed results. Comparison of the observed fundamental vibrational frequencies of O-ethyl benzoylthiocarbamate and calculated results by density functional B3LYP and Hartree-Fock methods indicate that B3LYP is superior to the scaled Hartree-Fock approach for molecular vibrational problems.     

Inelastic neutron scattering and vibrational spectra of 2-(N-methyl-α-iminoethyl)-phenol and 2-(N-methyliminoethyl)-phenol: Experimental and theoretical approach

The infrared, Raman, and inelastic neutron scattering (INS) spectra of two ortho-hydroxy aryl Schiff’s bases, 2-(N-methyliminoethyl)-phenol and 2-(N-methyl-α-iminoethyl)-phenol, were recorded. Ab initio molecular orbital calculations employing the DFT (B3LYP) method with the 6-31G** basis set for both compounds were done. Assignments of vibrational modes within the 3500–50 cm⁻¹ spectral region were carried out. On the basis of the DFT calculations, four rotomers of 2-(N-methyl-α-iminoethyl)-phenol were analysed.     

Synthesis of chiral lithium carbamates from (S)-2-(N,N-dialkyl-aminomethyl)pyrrolidines and (S)-methoxymethylpyrrolidine

A convenient synthesis of chiral lithium N-alkyl carbamates 1a–4a from chiral pyrrolidines 1–4, LiH and CO₂ is described. The yields are good to excellent. A combined experimental (¹H, ⁶Li-HOESY, cryoscopy) and theoretical study (B3LYP/6-311++G(d,p)) succeeded in assigning the predominant solution state structure of 1a.     

New preparation of N(1)- and N(2)- alkylated tetrazoles via displacement of activated alcohols

A facile and convenient synthesis of N(1)- and N(2)-alkyltetrazoles is described. Tetrazole in the presence of zinc triflate reacts smoothly with activated alcohols to give the corresponding alkyltetrazole in high yield.     

Theoretical studies of molecular structure and vibrational spectra of 2-amino-5-phenyl-1,3,4-thiadiazole

The molecular geometry and vibrational frequencies of 2-amino-5-phenyl-1,3,4-thiadiazole (C8H7N3S) in the ground state has been calculated using the Hartree-Fock and density functional method (B3LYP) with 6-31G(d) basis set. The optimized geometric bond lengths and bond angles obtained by using HF and DFT (B3LYP) show the best agreement with the experimental data. Comparison of the observed fundamental vibrational frequencies of 2-amino-5-phenyl-1,3,4-thiadiazole (C8H7N3S) and calculated results by density functional B3LYP and Hartree-Fock methods indicate that B3LYP is superior to the scaled Hartree-Fock approach for molecular vibrational problems.     

Theoretical studies on molecular structure and vibrational spectra of 8-hydroxyquinolinium picrate

Quantum chemical calculations of geometrical structure and vibrational wavenumbers of 8-hydroxyquinolinium picrate (8-HQP) were carried out by ab initio HF and density functional (DFT/B3LYP) method with 6-31++G(dp) basis set. The calculated geometric parameters of 8-HQP are presented. A detailed interpretation of the infrared spectra of 8-hydroxyquinolinium picrate (8-HQP) are also reported. Theoretical molecular frontier orbital energies of the title compound have been calculated using the method mentioned above in order to understand this phenomenon in the context of molecular orbital picture. The molecular HOMOs and LUMOs generated via HF and B3LYP method have been outlined.     

Theoretical study of the structure and vibrational spectra of the Ci(2) conformation of 18-crown-6

Optimized geometries of 18-crown-6 (18ce6) were calculated at the HF/6-31G* and B3LYP/6-31G* levels of theory for the D3d, Ci(1) and Ci(2) conformations. At the B3LYP level, the Ci(2) optimized geometry was higher in energy by 23.3 and 18.8 kcal mol(-1) than the Ci(1) and D3d optimized geometries, respectively. Harmonic force field, vibrational frequencies and IR absorption intensities were calculated at the corresponding optimized geometry at the B3LYP level for the Ci(2) conformation. Scaled Ci(2) frequencies were compared with the experimental frequencies of free 18ce6, Ci(1) conformation, and 18ce6-urea complex, Ci(2) conformation. This comparison showed possible misassignments in the fundamental vibrational frequencies of 18ce6.     

The crystal structure, vibrational spectra, and thermal behavior of dilithium piperazinium(2+) selenate tetrahydrate and dilithium N,N′-dimethylpiperazinium(2+) selenate tetrahydrate

The crystal structure of dilithium piperazinium(2+) selenate tetrahydrate has been solved; this substance crystallizes in the triclinic space group , a=7.931(2) Å, b=7.974(2) Å, c=7.991(2) Å, α=106.99(2)°, β=101.83(2)°, γ=119.28(2)° Z=1, R=0.0280 for 1489 observed reflections. A similar compound, dilithium N,N′-dimethylpiperazinium(2+) selenate tetrahydrate crystallizes in a monoclinic system with space group P2₁/c and lattice parameters a=7.338(1) Å, b=8.792(2) Å, c=12.856(1) Å, β=92.04(2)°, Z=2, R=0.0334 for 1462 observed reflections. Both structures are centrosymmetric with center of symmetry in the center of eight membered ring formed with two SeO₄ tetrahedra and two LiO₄ tetrahedra connected through tops. The two remaining oxygens on each Li atom come from water molecules. The FTIR and FT Raman spectra of both natural and N,O-deuterated substances have been measured and studied. The thermoanalytical properties were studied using TG, DTG and DTA methods in the temperature range 293–873 K for piperazinium derivative and in the range 293–523 K for dimethylpiperazinium derivative. DSC measurements were carried out in the temperature range 95–343 K. No phase transition was found in this temperature region for either of the compounds.     

Theoretical study of the structure and vibrational spectra of the (H2O)2…HF and H2O…(HF)2 molecular complexes

Using the Hartree–Fock and MP 2 methods with bases of up to 6-31++G (2d, 2p) quality, the optimum geometry of the 1:2 and 2:1 (H₂O)_n… (HF)_m complexes of water and hydrogen fluoride is searched in a systematic way. Two minimum-energy conformations are found for the 1:2 complex connected through a low-energy transition state. For the 2:1 complex, only one minimum-energy structure is obtained. The analysis of the geometries of the minima and their vibrational frequencies shows that none of them can be used to explain the existence of the H …F? H reverse complex detected experimentally. © 1994 John Wiley & Sons, Inc.     

Ru- and Fe-based N,N′-bis(2-pyridylmethyl)-N-methyl-(1S,2S)-1,2-cyclohexanediamine complexes immobilised on mesoporous MCM-41: Synthesis, characterization and catalytic applications

Protected mesoporous MCM-41 phases were synthesized by grafting of the ligand, (1S,2S)-N,N′-bis-pyridin-2-ylmethyl-cyclohexane-1,2-diamine (L₂Me), through the reactive 3-chloropropyltrimethoxysilane (3-CPTMS) group and designated as L₂Me-MCM-41. Subsequently, RuCl₃ and Fe(BF₄)₂ or Fe(CF₃SO₃)₂ were added to the heterogenized L₂Me-MCM-41 for complexation and designated as M-L₂Me-MCM-41 (M = Ru and Fe). All samples were characterized in detail using XRD, N₂ sorption isotherm, FT-IR, TGA-DTA, XPS, UV–vis, solid state ¹³C NMR, EPR and elemental analysis, etc. The XRD and sorption measurements of the catalyst confirmed the structural integrity of the mesoporous hosts and the spectroscopic characterization techniques proved the successful anchoring of the metal complexes over the modified mesoporous support. The screening of catalyst M-L₂Me-MCM-41 was done for the oxidation reaction of thioanisole (methyl phenyl sulphide) using H₂O₂ as an oxidant. The Ru-L₂Me-MCM-41 and Fe-L₂Me-MCM-41 catalysts show higher activities and turnover numbers and exhibit enantiomeric excess comparable to the homogeneous catalysts, Ru-L₂(Me)₂ and Fe-L₂(Me)₂. Furthermore, Fe-L₂Me-MCM-41 and Fe-L₂(Me)₂ were also found active in the epoxidation of styrene. These results indicate that metal complexes are confined into the pore of the material which play a major role in the reaction.     

UV/Vis Spectroscopic Properties of N -(2′-Hydroxy-4′- N , N -dimethyl-aminobenzylidene)-4-nitroaniline in Various Solvents and Solid Environments

 N-(2′-Hydroxy-4′-N,N-dimethylaminobenzylidene)-4-nitroaniline [HDBN] has been used as a model for investigating intra- and intermolecular D–A (donor–acceptor) interactions in various environments by means of UV/Vis spectroscopy. UV/Vis spectra of HDBN have been measured in various solvents, ethanolic solutions of different pH, adsorbed on silica, and in the solid state. A bathochromic shift of ν_max is observed with increasing the dipolarity/polarizability and HBD (hydrogen bond donor) capacity of the solvent, which is described by means of a multiple LSE (linear solvation energy) relationship in terms of the empirical Kamlet-Taft solvent polarity parameters. The adsorption of HDBN on Aerosil^? 300-silica particles in non-HBA (hydrogen bond acceptor) solvents is explained in the same sense. Mobile protons and sol–gel entrapping cause a hypsochromic shift due to protonation of the lone electron pair of the 4′-N,N-dimethylamino group. Hydroxide ions attack the 2′-hydroxy group which causes a bathochromic shift. A strong intramolecular hydrogen bond between the 2′-hydroxyl hydrogen and the imine nitrogen atom is present in the solid-state structure causing an unprecedented bathochromic shift.     

A study of internal rotations and vibrational spectra of oxiranemethanol (glycidol)

The conformational stability and the C–O and O–H internal rotations in oxiranemethanol were investigated at the DFT-B3LYP/6-311G**, MP2/6-311G** and MP4(SDQ)/6-311G** levels of theory. Three minima were predicted in the CCOH potential energy scans of the molecule to have relative energies of about 2 kcal/mol or less and all were calculated to have real frequencies upon full optimization of structural parameters at the DFT and the MP2 levels of calculations. The Cg1 (H bond inner) conformation was predicted to be the lowest energy conformation for oxiranemethanol in excellent agreement with an earlier microwave study. The equilibrium mixture was calculated from Gibb's free-energy changes to be about 79% Cg1, 17% G1g and 3% Gg1 at the B3LYP/6-311G** level and about 87% Cg1, 11% G1g and 2% Gg1 at the MP2/6-311G** level for oxiranemethanol at 298.15 K. No conclusive evidence was obtained for the presence of high-energy form in the liquid phase of oxiranemethanol. The vibrational frequencies of oxiranemethanol in its three stable forms were computed at the B3LYP level and complete vibrational assignments were made for the lowest energy Cg1 form on basis of calculated and experimental data of the molecule.     

2-(diphenylphosphinylmethoxy)aniline: Synthesis,vibrational spectra,and crystal structure

The synthesis, vibrational spectra, and X-ray diffraction analysis results for 2-(diphenylphosphinylmethoxy) aniline, 2-[(C₆H₅)₂P(O)OCH₂]C₆H₄NH₂(I), are described. The crystals are monoclinic: a = 18.4515(17) Å, b = 10.5421(12) Å, c = 17.897(2) Å, β = 104.479(8)°, V = 3370.7(6) ų, Z = 8, space group P2₁/c, R = 0.0546 for 1770 reflections with I > 2σ(I). The unit cell contains two crystallographically independent molecules Ia and Ib joined by an N-H …O hydrogen bond between a hydrogen atom of the amino group of aniline in molecule Ia (Ib) and the phosphoryl oxygen atom of molecule Ib (Ia) (O…H 2.18 and 2.19 Å, N…O, 2.979(5) and 3.000(5) Å; NHO angle, 154° and 157°).     

Hydrogen bonding effects on charge distribution and vibrational spectra of N-(2-carboxyphenyl)salicylidenimine tautomers

Structures of the phenol-imine and quinoid tautomers of the titled ligand have been obtained from the ab initio and hybrid density functional methods. The phenol-imine tautomer having bifurcated NH hydrogen bonds (1.799 and 1.833 Å), has been predicted to be 14.9 kJ mol⁻¹ more stable than the quinoid tautomer wherein OH hydrogen bonded interactions are present. Charge distributions in these tautomers have been calculated using the molecular electrostatic potential as a tool. Consequences of hydrogen bonding to the vibrational spectra are discussed.