Structure of the hydration shell of the Na+ ion in a planar nanopore with hydrophobic walls

The effect of steric hindrances in extremely narrow planar pores on the structure of the hydration shell of the single-charged sodium cation in water vapors at room temperature was studied by computer simulation. The deficiency of empty space for the motion in the slit-like pore was shown to slightly affect the radial distribution of molecules around the ion. The integrated (over the directions) numbers of ion-oxygen atom bonds of molecules in the ion’s hydration shell did not change despite the change in the shape of the hydration cluster from three- to two-dimensional. It was concluded that the changes in the positions of molecules relative to the ion were mainly reduced to azimuthal displacements; as a result, the local bulk density of molecules in the pore was higher than at the same distances outside the pore for the same total number of molecules. The distribution of molecules over layers inside the pore demonstrates the effect of molecules spread over the walls. The effect of ion displacement from its own hydration shell found earlier for the free chloride ion is steadily reproduced under the pore conditions. An alternative explanation to this effect was proposed that does not suggest high ion polarizability.     

Structure and electric properties of sodium ion hydrate shell in nanopore with hydrophilic walls

The method of molecular–level computer simulation at the temperature of 298 K was used to study the fundamental regularities of formation of electric properties of the hydrate shell of the Na⁺ cation in a planar model nanopore with hydrophilic structureless walls in contact with water vapors. Electric polarizability changes nonmonotonously: as consistent with the changes in the molecular structure of the system. Hydration within the pore occurs in several stages, from formation of chain structures, microdrop compaction and ejection of the ion from its own hydrate shell to encapsulation and absorption of the ion by the solvent preceding formation of nanoelectrolyte. Despite the significant differences in the energy of retaining hydrate shells for Na⁺ and Cl^─ ions, polarizabilities of the two systems are close and behave similarly under variation of conditions. Strong spatial anisotropy of the polarizability tensor of the ion–hydrate complex is due to the effect of the nanopore walls on multiparticle spatial correlations in the system.     

Structure and electric properties of the hydration shell of a singly charged chloride ion in a nanopore with hydrophilic walls

The effect of hydrophilic walls on the structure of the hydration shell of a Cl^? ion is studied in terms of the model flat nanopore in contact with water vapors at room temperature by the Monte Carlo computerassisted simulations. In the field of hydrophilic walls, the hydration shell falls into two parts: the ion-enveloping part and the molecular-film spots spread over the wall surface above and under the ion. Both parts have the pronounced radial-layered structure. The three-dimensional scheme of distribution of the averaged local shell density represents a system of conical coaxial layers expanding in the direction from wall to ion. The effect of forcing out the ion from its own hydration shell is also observed for hydrophilic walls. The specific electric polarizability of the shell is strongly anisotropic. Its longitudinal component is several times larger than the transversal component and behaves nonmonotonically as the hydration shell grows, passing through the maximum. The molecular order near the walls is characterized by the preferential orientation of the molecule plane in parallel to the wall plane and the turn of symmetry axes of molecules in the direction parallel to the normal to the pore plane in the vicinity of the ion.     

Electric-field-controlled water and ion permeation of a hydrophobic nanopore

The permeation of hydrophobic, cylindrical nanopores by water molecules and ions is investigated under equilibrium and out-of-equilibrium conditions by extensive molecular-dynamics simulations. Neglecting the chemical structure of the confining pore surface, we focus on the effects of pore radius and electric field on permeation. The simulations confirm the intermittent filling of the pore by water, reported earlier under equilibrium conditions for pore radii larger than a critical radius R(c). Below this radius, water can still permeate the pore under the action of a strong electric field generated by an ion concentration imbalance at both ends of the pore embedded in a structureless membrane. The water driven into the channel undergoes considerable electrostriction characterized by a mean density up to twice the bulk density and by a dramatic drop in dielectric permittivity which can be traced back to a considerable distortion of the hydrogen-bond network inside the pore. The free-energy barrier to ion permeation is estimated by a variant of umbrella sampling for Na(+), K(+), Ca(2+), and Cl(-) ions, and correlates well with known solvation free energies in bulk water. Starting from an initial imbalance in ion concentration, equilibrium is gradually restored by successive ion passages through the water-filled pore. At each passage the electric field across the pore drops, reducing the initial electrostriction, until the pore, of radius less than R(c), closes to water and hence to ion transport, thus providing a possible mechanism for voltage-dependent gating of hydrophobic pores.     

Computer simulation of the hydration of a chloride anion in a nanopore with hydrophilic walls

The hydration of a single-charged chloride anion Cl^- in a model plane nanopore with structureless hydrophilic walls in water vapor at room temperature is simulated using the Monte Carlo method. It is established that the adsorption of a fraction of associate molecules Cl^-(H₂O)_N on the walls enhances its thermodynamic stability and simulates the hydration of the ion at low vapor pressures. It is shown that a second stability crisis forms on the curve of the hydration work function in the mode of weak wall hydrophilicity.     

Water vapor clustering in the field of a chlorine anion occurring in a planar nanopore with structureless walls

The Monte Carlo bicanonical statistical ensemble method has been employed to calculate the free energy, entropy, and work of Cl^? ion hydration in model planar pores 0.5 and 0.7 nm wide at 298 and 400 K. A detailed model of many-body interactions with the ion has been used, the model being matched to experimental data with respect to the free energy and enthalpy of attachment reaction in water vapor. Under the conditions of a restricted volume, the equilibrium size of a hydration shell substantially decreases, with the effect becoming stronger in the range of moderate and large sizes. In moderately supersaturated vapors, under the conditions of a nanopore, the ion loses its hydration shell as the temperature is decreased. In supersaturated vapors, the hydration shell formed on the ion is thermodynamically stable, while the stability crisis shifts to the region of larger sizes. The enhancement of the thermodynamic stability in the pore results from a rise in the chemical potential of molecules due to the deficiency of closet neighbors and a reduction in the entropy under the conditions of the restricted volume. As the temperature is elevated, the effect of ion displacement out of its hydration shell is leveled. The regularities derived in terms of the estimation model based on the capillary approximation are in qualitative agreement with the results of computer simulation.     

Water vapor clustering in the field of Na<Superscript>+</Superscript> cation inside a nanopore with hydrophilic walls. 2. Thermodynamic properties

The bicanonical statistical ensemble method has been used to calculate at the molecular level the free energy, entropy, and work of hydration of single-charged sodium cation in a model planar nanopore with structureless hydrophilic walls. The calculations have been performed in terms of a detailed many-particle model of intermolecular interactions calibrated with respect to experimental data on the free energy and enthalpy of the initial reactions of attachment in water vapor. In contrast to chlorine anion, at initial stages of formation, the hydration shell of sodium cation has a loose chain structure, which is reflected in the character of the interaction with pore walls and the behavior of entropy. Under the conditions of weakly hydrophilic walls, the system loses its stability; however, the stability remains preserved in a pore with strongly hydrophilic walls. Hydrophilic walls stabilize the system and shift the onset of hydration toward lower vapor pressures by several orders of magnitude.     

Pyridine-based coordination polymeric hydrogel with Cu2+ ion and its encapsulation of a hydrophobic molecule

We report the formation of a coordination polymeric hydrogel of a pyridine derivative with Cu(2+) and its efficiency as a delivery system for curcumin as a model hydrophobic drug.     

Thermodynamic properties of a shell molecule-gas particles system

A Lennard-Jones potential is used to derive formulaefor the potential of interaction between shell macromolecules and gas atoms. Calculations are carried as far as thespherical symmetry approximation. The potential of interaction determines the stability of a shell topological compound. When the distance R between a shell molecule and a gas atom is equal the radius 1 of the outer shell, the potential is the highest and determines a barrier, which must be lower than an energy of the trapped/by the shell molecule/atom to be released.     

Water vapor nucleation on ion pairs under the conditions of a planar nanopore

Computer simulation has been employed to study the effect of a confined space of a planar model pore with structureless hydrophobic walls on the hydration of Na⁺Cl^– ion pairs in water vapor at room temperature. A detailed many-body model of intermolecular interactions has been used. The model has been calibrated relative to experimental data on the free energy and enthalpy of the initial reactions of water molecule attachment to ions and the results of quantum-chemical calculations of the geometry and energy of Na⁺Cl^– (H₂O)_N clusters in stable configurations, as well as spectroscopic data on Na⁺Cl^– dimer vibration frequencies. The free energy and work of hydration, as well as the adsorption curve, have been calculated from the first principles by the bicanonical statistical ensemble method. The dependence of hydration shell size on interionic distance has been calculated by the method of compensation potential. The transition between the states of a contact (CIP) and a solvent-separated ion pair (SSIP) has been reproduced under the conditions of a nanopore. The influence of the pore increases with the hydration shell size and leads to the stabilization of the SSIP states, which are only conditionally stable in bulk water vapor.     

Thermodynamic properties of methane hydrate in quartz powder

Using the experimental method of precision adiabatic calorimetry, the thermodynamic (equilibrium) properties of methane hydrate in quartz sand with a grain size of 90-100 microm have been studied in the temperature range of 260-290 K and at pressures up to 10 MPa. The equilibrium curves for the water-methane hydrate-gas and ice-methane hydrate-gas transitions, hydration number, latent heat of hydrate decomposition along the equilibrium three-phase curves, and the specific heat capacity of the hydrate have been obtained. It has been experimentally shown that the equilibrium three-phase curves of the methane hydrate in porous media are shifted to the lower temperature and high pressure with respect to the equilibrium curves of the bulk hydrate. In these experiments, we have found that the specific heat capacity of the hydrate, within the accuracy of our measurements, coincides with the heat capacity of ice. The latent heat of the hydrate dissociation for the ice-hydrate-gas transition is equal to 143 +/- 10 J/g, whereas, for the transition from hydrate to water and gas, the latent heat is 415 +/- 15 J/g. The hydration number has been evaluated in the different hydrate conditions and has been found to be equal to n = 6.16 +/- 0.06. In addition, the influence of the water saturation of the porous media and its distribution over the porous space on the measured parameters has been experimentally studied.     

Thermodynamic parameters of reactions of Cd2+ ion complexation with L-aspartic acid in aqueous solutions

Calorimetric enthalpies of complexation of L-aspartic acid (H₂Asp) with Cd²⁺ ion at 298.15 K and ionic strengths of 0.5, 0.75, and 1.0 (KNO₃) were determined. The thermodynamic parameters of complex formation reactions (for CdAsp and CdAsp ₂ ^2? complexes) at zero and nonzero ionic strength were calculated.     

Steered molecular dynamics studies of the potential of mean force of a Na+ or K+ ion in a cyclic peptide nanotube

Potential of mean force (PMF) profiles of a single Na+ or K+ ion passing through a cyclic peptide nanotube, cyclo[-(D-Ala-Glu-D-Ala-Gln)2-], in water are calculated to provide insight into ion transport and to understand the conductance difference between these two ions. The PMF profiles are obtained by performing steered molecular dynamics (SMD) simulations that are based on the Jarzynski equality. The computed PMF profiles for both ions show barriers of around 2.4 kcal/mol at the channel entrances and exits and energy wells in the middle of the tube. The energy barriers, so-called dielectric energy barriers, arise due to the desolvation of water molecules when ions move across the nanotube, and the energy wells appear as a result of attractive interactions between the cations and negatively charged carbonyl oxygens on the backbone of the tube. We find more and deeper energy wells in the PMF profile for Na+ than for K+, which suggests that Na+ ions have a longer residence time inside the nanotube and that permeation of Na+ ions is reduced compared to K+ ions. Calculations of the radial distribution functions (RDF) between the ions and oxygens in the water molecules and in carbonyl groups on the tube and an investigation of the orientations of the carbonyl groups show that, in contrast with the dynamic carbonyl groups observed in the selectivity filter of the KcsA ion channel, the carbonyl groups in the cyclic peptide nanotube are relatively rigid, with only slight reorientation of the carbonyl groups as the cations pass through. The rigidity of the carbonyl groups in the cyclic peptide nanotube can be attributed to their role in hydrogen bonding, which is responsible for the tube structure. Comparison of the PMF profiles with the electrostatic energy profiles calculated from the Poisson-Boltzmann (PB) equation, a dielectric continuum model, reveals that the dielectric continuum model breaks down in the confined region within the tube that governs ion transport.     

Thermodynamic analysis of a hydrophobic binding site: probing the PDZ domain with nonproteinogenic peptide ligands

[structure: see text] Isothermal titration calorimetry (ITC) is used to study the thermodynamic consequences of systematically modifying the hydrophobic character of a single residue in a series of protein-binding ligands. By substituting standard and nonproteinogenic aliphatic amino acids for the C-terminal valine of the hexapeptide KKETEV, binding to the third PDZ domain (PDZ3) of the PSD-95 protein is characterized by distinct changes in the Gibbs free energy (DeltaG), enthalpy (DeltaH), and entropy (TDeltaS) parameters. One notable observation is that peptide binding affinity can be improved with a nonstandard residue.     

Structure and ion exchange properties of a new cobalt borate with a tunnel structure "templated" by Na+

The new anhydrous borate Na2Co2B12O21 has been synthesized by flux methods and studied by single-crystal X-ray diffraction (space group I2/a with a = 17.1447(15) A, b = 4.5530(5) A, c = 19.4408(15) A, beta = 103.212(5) degrees , V = 1477.4(2) A3, Z = 4). Refinement of its structure reveals it is the first metaborate exhibiting a tunnel network, with internal dimensions of 4.5 x 8.8 A2. Further single-crystal diffraction studies show that the Na+ ions within the tunnels are exchangeable with Li+ along with the absorption of water molecules to form Li2(H2O)2Co2B12O21, making this compound a unique non-siliceous zeotype.     

Encasing of Na+ ion in dimer‐formed acetic acid clusters

Peaks with anomalous abundance found in the mass spectra are associated with ions with enhanced stability. Among the scientific community focused on mass spectrometry, these peaks are called ‘magic peaks’ and their stability is often because of suggestive symmetric structures. Here, we report findings on ionised Na‐acetic acid clusters [Na⁺‐(AcA)_n] produced by Na‐doping of (AcA)_n and UV laser ionisation. Peaks labelled n = 2, 4, 8 are clearly distinguishable in the mass spectra from their anomalous intensity. Ab initio calculations helped elucidate cluster structures and energetic. A plausible interpretation of the magic peaks is given in terms of (AcA)_n formed by dimer aggregation. The encasing of Na⁺ by twisted dimers is proposed to be the origin of the enhanced cluster stability. A conceivable dimer‐formed tube‐like closed structure is found for the Na⁺‐(AcA)₈. Copyright © 2015 John Wiley & Sons, Ltd.     

Fluorogenic 1,3-dipolar cycloaddition within the hydrophobic core of a shell cross-linked nanoparticle

Using either nitroxide mediated polymerization (NMP) or reversible addition fragmentation transfer (RAFT) techniques, novel block copolymers that present terminal acetylenes, in the side chain of the styrenic block, were obtained with narrow polydispersities and targeted molecular weights. For the conversion of these acetylene-functionalized polymers to amphiphilic block copolymers, RAFT techniques were preferred. Mild protection/deprotection chemistries were employed which were compatible with the incorporation of the acetylene functionality in the hydrophobic segment. These acetylene-functionalized, Click-readied amphiphilic block copolymers were then self-assembled and cross-linked to afford shell cross-linked knedel-like (SCK) nanoparticles that contained acetylene groups in the core domain. The hydrodynamic diameters (D(h)) of the block copolymer micelles and nanoparticles were determined by dynamic light scattering (DLS), and the dimensions of the nanoparticles were characterized using tapping-mode atomic force microscopy (AFM) and transmission electron microscopy (TEM). The chemical availability of the Click functionality within the core domain of the SCKs was investigated using the copper(I)-catalyzed 1,3-dipolar fluorogenic cycloaddition with a non-fluorescent 3-azidocoumarin profluorophore to afford intensely fluorescent nanoparticles.     

Preparation and characterization of latices with hydrophobic core and hydrophilic shell

Anionic and non-ionic copolymer latices with a hydrophobic core and hydrophilic shell were prepared using emulsifier-free emulsion polymerization. Styrene was used as the hydrophobic monomer; acrylic acid, acrylamide, and methacrylamide were employed as the hydrophilic monomers. The amount of chemically bound hydrophilic monomers in latex and unbound homopolymers in water were determined. The salt stability and redispersability of latices in water after spray-drying were also investigated.     

Capillary affinity electrophoresis and ab initio calculation studies of valinomycin complexation with Na+ ion

In a combined experimental and theoretical approach, the interactions of valinomycin (Val), macrocyclic depsipeptide antibiotic ionophore, with sodium cation Na⁺ have been investigated. The strength of the Val–Na⁺ complex was evaluated experimentally by means of capillary affinity electrophoresis. From the dependence of valinomycin effective electrophoretic mobility on the sodium ion concentration in the BGE (methanolic solution of 20 mM chloroacetic acid, 10 mM Tris, 0–40 mM NaCl), the apparent binding (stability) constant (K_b) of the Val–Na⁺ complex in methanol was evaluated as log K_b = 1.71 ± 0.16. Besides, using quantum mechanical density functional theory (DFT) calculations, the most probable structures of the nonhydrated Val–Na⁺ as well as hydrated Val–Na⁺·H₂O complex species were proposed. Compared to Val–Na⁺, the optimized structure of Val–Na⁺·H₂O complex appears to be more realistic as follows from the substantially higher binding energy (118.4 kcal/mol) of the hydrated complex than that of the nonhydrated complex (102.8 kcal/mol). In the hydrated complex, the central Na⁺ cation is bound by strong bonds to one oxygen atom of the respective water molecule and to four oxygens of the corresponding C=O groups of the parent valinomycin ligand.