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1.
张雪英  孟令鹏  曾艳丽  赵影  郑世钧   《化学学报》2008,66(4):413-418
运用量子化学微扰理论MP2和密度泛函B3LYP方法, 采用6-311++G(d,p)基组, 对H2O, H2S与双卤分子XY (XY=F2, Cl2, Br2, ClF, BrF, BrCl)形成的卤键复合物进行构型全优化, 并计算得到了这些体系的分子间相互作用能. 利用电子密度拓扑分析方法对卤键复合物的拓扑性质进行了分析研究, 探讨了该类分子间卤键的作用本质. 结果表明, 形成卤键后, 作为电子受体的双卤分子X—Y键长增长, 振动频率减小. 复合物体系中的卤键介于共价键与离子键之间, 偏于静电作用成分为主.  相似文献   

2.
Density functional theory calculations were performed on halogen-bonded and hydrogen-bonded systems consisting of a halobenzene (XPh; X = F, Cl, Br, I, and At) and one or two water molecules, using the M06-2X density functional with the 6-31+G(d) (for C, H, F, Cl, and Br) and aug-cc-pVDZ-PP (for I, At) basis sets. The counterpoise procedure was performed to counteract the effect of basis set superposition error. The results show halogen bonds form in the XPh-H2O system when X > Cl. There is a trend toward stronger halogen bonding as the halogen group is descended, as assessed by interaction energy and X•••Ow internuclear separation (where Ow is the water oxygen). For all XPh-H2O systems hydrogen-bonded systems exist, containing a combination of CH•••Ow and OwHw•••X hydrogen bonds. For all systems except X = At the X•••Hw hydrogen-bonding interaction is stronger than the X•••Ow halogen bond. In the XPh-(H2O)2 system halogen bonds form only for X > Br. The two water molecules prefer to form a water dimer, either located around the C H bond (for X = Br, At, and I) or located above the benzene ring (for all halogens). Thus, even in the absence of competing strong interactions, halogen bonds may not form for the lighter halogens due to (1) competition from cooperative weak interactions such as C H•••O and OH•••X hydrogen bonds, or (2) if the formation of the halogen bond would preclude the formation of a water dimer. © 2018 Wiley Periodicals, Inc.  相似文献   

3.
Equilibrium geometries, interaction energies, and charge transfer for the intermolecular interactions between BrF and HnX (HF, H2O, and NH3) were studied at the MP2/6-311++G(3d,3p) level. The halogen-bonded geometry and hydrogen-bonded geometry are observed in these interactions. The calculated interaction energies show that the halogen-bonded structures are more stable than the corresponding hydrogen-bonded structures. To study the nature of the intermolecular interactions, symmetry-adapted perturbation theory (SAPT) calculations were carried out and the results indicate that the halogen bonding interactions are dominantly inductive energy in nature, while electrostatic energy governs the hydrogen bonding interactions.  相似文献   

4.
Ab initio calculations at the MP2/aug-cc-pVTZ level of theory are performed to examine 1:1 and 1:2 complexes of YOF2X (X = F, Cl, Br, I; Y = P, As) with ammonia. The YOF2X:NH3 complexes are formed through the interaction of the lone pair of the ammonia with the σ-hole region associated with the X or Y atom of YOF2X molecule. The calculated interaction energies of halogen-bonded complexes are between ?1.06 kcal/mol in the POF3···NH3 and ?6.21 kcal/mol in the AsOF2I···NH3 one. For a given Y atom, the largest pnicogen bond interaction energy is found for the YOF3, while the smallest for the YOF2I one. Almost a strong linear relationship is evident between the interaction energies and the magnitudes of the positive electrostatic potentials on the X and Y atoms. The results indicate that the interaction energies of halogen and pnicogen bonds in the ternary H3N:YOF2X:NH3 systems are less negative relative to the respective binary systems. The interaction energy of Y···N bond is decreased by 1–22 %, whereas that of X···N bond by about 5–61 %. That is, both Y···N and X···N interactions exhibit anticooperativity or diminutive effects in the ternary complexes.  相似文献   

5.
In recent years, many applications of solution‐phase halogen bonding in anion recognition, catalysis, and pseudorotaxane formation have been reported. Moreover, a number of thermodynamic data of halogen bonding interactions in organic solution are now available. To obtain detailed information of the influence of the surrounding medium on weak halogen bonds, a series of dimeric complexes of halobenzene (PhX) with three electron donors (H2O, HCHO, and NH3) were investigated by means of DFT/PBE calculations in this work. The PCM implicit solvation approach was utilized to include the effects of three solvents (cyclohexane, chloroform, and water) as representatives for a wide range of dielectric constant. In some cases, halogen‐bond distances are shown to shorten in solution, accompanied by concomitant elongation of the C? X bonds. For the remaining systems, the intermolecular distances tend to increase or remain almost unchanged under solvent effects. In general, the solvent has a slight destabilizing effect on weak halogen bonds; the strength order of halogen bonds observed in vacuum remains unchanged in liquid phases. Particularly, the interaction strength attenuates in the order I > Br > Cl in solution, consistent with the experimental measurements of weak halogen bond door abilities. The similarities between halogen and hydrogen bonding in solution were also elucidated. The results presented herein would be very useful in future applications of halogen bonding in molecular recognition and medicinal chemistry. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012  相似文献   

6.
The trends in the properties of prereactive or charge-transfer complexes formed between the simple amines NH3, CH3NH2, (CH3)2NH, and (CH3)3N and the halogens F2, ClF, Cl2, BrF, BrCl, and Br2 were investigated by the ab initio restricted Hartree–Fock approach, the Møller–Plesset second-order method, and with several density functional theory variants using extended polarized basis sets. The most important structural parameters, the stabilization energies, the dipole moments, and other quantities characterizing the intermolecular halogen bond in these complexes are monitored, discussed, and compared. A wide range of interaction strengths is spanned in these series. Successive methyl substitution of the amine as well as increasing polarities and polarizabilities of the halogen molecules both systematically enhance the signature of charge-transfer interaction. These trends in halogen bonds of varying strength, in many aspects, parallel the features of hydrogen bonding.  相似文献   

7.
Using ab initio calculations, the geometries, interaction energies and bonding properties of chalcogen bond and halogen bond interactions between YOX4 (Y = S, Se; X = F, Cl, Br) and NH3 molecules are studied. These binary complexes are formed through the interaction of a positive electrostatic potential region (σ-hole) on the YOX4 with the negative region in the NH3. The ab initio calculations are carried out at the MP2/aug-cc-pVTZ level, through analysis of molecular electrostatic potentials, quantum theory of atoms in molecules and natural bond orbital methods. Our results indicate that even though the chalcogen and halogen bonds are mainly dominated by electrostatic effects, but the polarization and dispersion effects also make important contributions to the total interaction energy of these complexes. The examination of interaction energies suggests that the chalcogen bond is always favored over the halogen bond for all of the binary YOX4:NH3 complexes.  相似文献   

8.
CCSD(T)/aug-cc-pVTZ//ωB97XD/aug-cc-pVTZ calculations were performed for halogen-bonded complexes. Here, the molecular hydrogen, cyclopropane, cyclobutane and cyclopentane act as Lewis base units that interact through the electrons of the H–H or C–C σ-bond. The FCCH, ClCCH, BrCCH and ICCH species, as well as the F2, Cl2, Br2 and I2 molecular halogens, act as Lewis acid units in these complexes, interacting through the σ-hole localised at the halogen centre. The Quantum Theory of Atoms in Molecules (QTAIM), the Natural Bond Orbital (NBO) and the Energy Decomposition Analysis (EDA) approaches were applied to analyse these aforementioned complexes. These complexes may be classified as linked by A–X···σ halogen bonds, where A = C, X (halogen). However, distinct properties of these halogen bonds are observed that depend partly on the kind of electron donor: dihydrogen, cyclopropane, or another cycloalkane. Examples of similar interactions that occur in crystals are presented; Cambridge Structural Database (CSD) searches were carried out to find species linked by the A–X···σ halogen bonds.  相似文献   

9.
Ab initio calculations are used to provide information on H3N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H3N???Br2‐HF, H3N???Cl2???HF, H3N???BrCI???HF, H3N???BrF???HF, and H3N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.  相似文献   

10.
Sulfur dioxide and hypohalous acids (HOX, X=F, Cl, Br, I) are ubiquitous molecules in the atmosphere that are central to important processes like seasonal ozone depletion, acid rain, and cloud nucleation. We present the first theoretical examination of the HOX⋯SO2 binary complexes and the associated trends due to halogen substitution. Reliable geometries were optimized at the CCSD(T)/aug-cc-pV(T+d)Z level of theory for HOF and HOCl complexes. The HOBr and HOI complexes were optimized at the CCSD(T)/aug-cc-pV(D+d)Z level of theory with the exception of the Br and I atoms which were modeled with an aug-cc-pwCVDZ-PP pseudopotential. 27 HOX⋯SO2 complexes were characterized and the focal point method was employed to produce CCSDT(Q)/CBS interaction energies. Natural Bond Orbital analysis and Symmetry Adapted Perturbation Theory were used to classify the nature of each principle interaction. The interaction energies of all HOX⋯SO2 complexes in this study ranged from 1.35 to 3.81 kcal mol−1. The single-interaction hydrogen bonded complexes spanned a range of 2.62 to 3.07 kcal mol−1, while the single-interaction halogen bonded complexes were far more sensitive to halogen substitution ranging from 1.35 to 3.06 kcal mol−1, indicating that the two types of interactions are extremely competitive for heavier halogens. Our results provide insight into the interactions between HOX and SO2 which may guide further research of related systems.  相似文献   

11.
3-硝基-1,2,4-三唑-5-酮与NH3及H2O分子间相互作用的理论研究   总被引:1,自引:0,他引:1  
方国勇  徐丽娜  肖鹤鸣  居学海 《化学学报》2005,63(12):1055-1061
在DFT-B3LYP/6-311++G**水平上, 求得3-硝基-1,2,4-三唑-5-酮(NTO)/NH3和NTO/H2O两种超分子体系势能面上5种全优化构型. 经基组叠加误差(BSSE)和零点能(ZPE)校正, 求得NTO与NH3和H2O的分子间最大相互作用能依次为-37.58和-30.14 kJ/mol, 表明NTO与NH3的分子间相互作用强于与H2O的作用. 超分子体系中电子均由NH3或H2O向NTO转移, 相互作用能主要由强氢键所贡献, 由自然键轨道分析揭示了相互作用的本质. 对优化构型进行振动分析, 并基于统计热力学求得200.0~800.0 K温度范围从单体形成超分子的热力学性质变化. 发现由NTO和NH3形成超分子II和III在常温下可自发进行; 而NTO和H2O只在低温下才能自发形成IV, V和VI超分子.  相似文献   

12.
Halogen–hydride interactions between the lowest energy structure of Cu n H n and Cu n H clusters (n = 2–5) as halogen acceptor and ClC2Z (Z = H, F, CH3) as halogen donor have been investigated at the MP2/6-311++G(d,p) level of theory. Different approaches based on structural parameters, energetic analysis, shift in vibrational frequencies, and molecular electrostatic potential were used to characterize the resultant halogen–hydride bonds. Upon complexation, the Cl–C bonds tend to elongate, concomitant with red shifts of the Cl–C vibrational frequencies. Interaction energies of this type of halogen bonds vary from ?2.34 to a maximum ?7.38 kJ mol?1. The calculated interaction energies were found to be increased in magnitude with increasing of the negative electrostatic potential at a point on the outer side of hydrogen atom of halogen acceptor units. Moreover, decomposition of the interaction energies reveals that the electrostatic interaction plays a main role in the formation of the complexes. The quantum theory of atoms in molecules analysis has also been applied to provide more insight into the nature and properties of these interactions. Our results indicate pure closed-shell interactions in these systems with similar characteristics to the conventional halogen bonds.  相似文献   

13.
Graphene is an important material in adsorption processes because of its high surface. In this work, the interactions between graphene (G), S-doped graphene (SG), and 2S-doped graphene (2SG) with eight small molecules including molecular halogens, CH3OH, CH3SH, H2O, and H2S were studied using density functional theory calculations. The adsorption energies showed that the SG was the best adsorbent, fluorine was the best adsorbate, and all molecular halogens were adsorbed on graphenes better than the other molecules. Most adsorption processes in the gas phase were exothermic with small positive ΔG ads. Moreover, the solvent effect on the adsorption process was examined and all ΔH ads and ΔG ads values for adsorption processes tended to be more negative in all solvents. Therefore, most adsorption processes in the solvents were thermodynamically favorable. The second order perturbation energies obtained from NBO calculations confirmed that the interactions between molecular halogens and our molecules had more strength than those of other molecules. The Laplacian of ρ values obtained from the AIM calculations indicated that the type of interaction in all our complexes was one of closed shell interaction. The MO results and DOS plots also revealed that sulfur doping could increase the conductivity of graphene and this conductivity was enhanced more when they interacted with molecular halogens.  相似文献   

14.
Ab initio MP2/aug’-cc-pVTZ calculations have been carried out to investigate H2CO : PXH2 pnicogen-bonded complexes and HCO2H : PXH2 complexes that are stabilized by pnicogen bonds and hydrogen bonds, with X=NC, F, Cl, CN, OH, CCH, CH3, and H. The binding energies of these complexes exhibit a second-order dependence on the O−P distance. DFT-SAPT binding energies correlate linearly with MP2 binding energies. The HCO2H : PXH2 complexes are stabilized by both a pnicogen bond and a hydrogen bond, resulting in greater binding energies for the HCO2H : PXH2 complexes compared to H2CO : PXH2. Neither the O−P distance across the pnicogen bond nor the O−P distance across the hydrogen bond correlates with the binding energies of these complexes. The nonlinearity of the hydrogen bonds suggests that they are relatively weak bonds, except for complexes in which the substituent X is either CH3 or H. The pnicogen bond is the more important stabilizing interaction in the HCO2H : PXH2 complexes except when the substituent X is a more electropositive group. EOM-CCSD spin-spin coupling constants 1pJ(O−P) across pnicogen bonds in H2CO:PXH2 and HCO2H : PXH2 complexes increase as the O−P distance decreases, and exhibit a second order dependence on that distance. There is no correlation between 2hJ(O−P) and the O−P distance across the hydrogen bond in the HCO2H : PXH2 complexes. 2hJ(O−P) coupling constants for complexes with X=CH3 and H have much greater absolute values than anticipated from their O−P distances.  相似文献   

15.
The characteristics and structures of single-electron halogen bond complexes [H3C?Br-Y (Y = H, CCH, CN, NC, C2H3)] have been investigated by theoretical calculation methods. The geometries were optimized and frequencies calculated at the B3LYP/6-311++G** level. The interaction energies were corrected for basis set superposition error (BSSE) and the wavefunctions obtained by the natural bond orbital (NBO) and atom in molecule (AIM) analyses at the MP2/6-311++G** level. For each H3C?Br-Y complex, a single-electron Br bond is formed between the unpaired electron of the CH3 (electron donor) radical and the Br atom of Br-Y (electron acceptor); this kind of single-electron bromine bond also possesses the character of a “three-electron bond”. Due to the formation of the single-electron Br bond, the C-H bonds of the CH3 radical bend away from the Br-Y moiety and the Br-Y bond elongates, giving red-shifted single-electron Br bond complexes. The effects of substituents, hybridization of the carbon atom, and solvent on the properties of the complexes have been investigated. The strengths of single-electron hydrogen bonds, single-electron halogen bonds and single-electron lithium bonds have been compared. In addition, the single-electron halogen bond system is discussed in the light of the first three criteria for hydrogen bonding proposed by Popelier.  相似文献   

16.
The halogen-bonded complexes between H2Te/Me2Te and the dihalogen molecules XY (XY = F2, Cl2, Br2, I2, ClF, ClBr, BrF, BrCl, BrI, IF, ICl, IBr) have been studied to investigate the dependence of its strength and nature on the halogen donor X and its adjoining atom Y, as well as the methyl groups in the electron donor. The interaction energy varies between −1.7 and − 43.5 kcal/mol, indicating that the Te atom in H2Te/Me2Te has a strong affinity for the dihalogen molecules. For the H2Te-XY complex, the halogen bond is stronger for the heavier halogen donor X atom and the strong electron-withdrawing group Y. However, for Me2Te-XY, the halogen bond is stronger for the lighter halogen donor X atom. The H2Te/Me2Te-F2 complex has the largest interaction energy, although the σ-hole on F2 is the smallest in magnitude. In most of the complexes, the electrostatic and polarization contributions to the binding strength are similar in magnitude. However, for H2Te/Me2Te-F2, the polarization contribution is much larger than the electrostatic contribution, with a significant contribution from charge transfer.  相似文献   

17.
Quantum chemical calculations are applied to complexes of 6-OX-fulvene (X=H, Cl, Br, I) with ZH3/H2Y (Z=N, P, As, Sb; Y=O, S, Se, Te) to study the competition between the hydrogen bond and the halogen bond. The H-bond weakens as the base atom grows in size and the associated negative electrostatic potential on the Lewis base atom diminishes. The pattern for the halogen bonds is more complicated. In most cases, the halogen bond is stronger for the heavier halogen atom, and pnicogen electron donors are more strongly bound than chalcogen. Halogen bonds to chalcogen atoms strengthen in the order O<S<Se<Te, whereas the pattern is murkier for the pnicogen donors. In terms of competition, most halogen bonds to pnicogen donors are stronger than their H-bond analogues, but there is no clear pattern with respect to chalcogen donors. O prefers a H-bond, while halogen bonds are favored by Te. For S and Se, I-bonds are strongest, followed Br, H, and Cl-bonds in that order.  相似文献   

18.
The MP2 ab initio quantum chemistry methods were utilized to study the halogen‐bond and pnicogen‐bond system formed between PH2X (X = Br, CH3, OH, CN, NO2, CF3) and BrY (Y = Br, Cl, F). Calculated results show that all substituent can form halogen‐bond complexes while part substituent can form pnicogen‐bond complexes. Traditional, chlorine‐shared and ion‐pair halogen‐bonds complexes have been found with the different substituent X and Y. The halogen‐bonds are stronger than the related pnicogen‐bonds. For halogen‐bonds, strongly electronegative substituents which are connected to the Lewis acid can strengthen the bonds and significantly influenced the structures and properties of the compounds. In contrast, the substituents which connected to the Lewis bases can produce opposite effects. The interaction energies of halogen‐bonds are 2.56 to 32.06 kcal·mol?1; The strongest halogen‐bond was found in the complex of PH2OH???BrF. The interaction energies of pnicogen‐bonds are in the range 1.20 to 2.28 kcal·mol?1; the strongest pnicogen‐bond was found in PH2Br???Br2 complex. The charge transfer of lp(P) ? σ*(Br? Y), lp(F) ? σ*(Br? P), and lp(Br) ? σ*(X? P) play important roles in the formation of the halogen‐bonds and pnicogen‐bonds, which lead to polarization of the monomers. The polarization caused by the halogen‐bond is more obvious than that by the pnicogen‐bond, resulting in that some halogen‐bonds having little covalent character. The symmetry adapted perturbation theory (SAPT) energy decomposition analysis showes that the halogen‐bond and pnicogen‐bond interactions are predominantly electrostatic and dispersion, respectively.  相似文献   

19.
The geometries and interaction energies of complexes of pyridine with C6F5X, C6H5X (X=I, Br, Cl, F and H) and RFI (RF=CF3, C2F5 and C3F7) have been studied by ab initio molecular orbital calculations. The CCSD(T) interaction energies (Eint) for the C6F5X–pyridine (X=I, Br, Cl, F and H) complexes at the basis set limit were estimated to be ?5.59, ?4.06, ?2.78, ?0.19 and ?4.37 kcal mol?1, respectively, whereas the Eint values for the C6H5X–pyridine (X=I, Br, Cl and H) complexes were estimated to be ?3.27, ?2.17, ?1.23 and ?1.78 kcal mol?1, respectively. Electrostatic interactions are the cause of the halogen dependence of the interaction energies and the enhancement of the attraction by the fluorine atoms in C6F5X. The values of Eint estimated for the RFI–pyridine (RF=CF3, C2F5 and C3F7) complexes (?5.14, ?5.38 and ?5.44 kcal mol?1, respectively) are close to that for the C6F5I–pyridine complex. Electrostatic interactions are the major source of the attraction in the strong halogen bond although induction and dispersion interactions also contribute to the attraction. Short‐range (charge‐transfer) interactions do not contribute significantly to the attraction. The magnitude of the directionality of the halogen bond correlates with the magnitude of the attraction. Electrostatic interactions are mainly responsible for the directionality of the halogen bond. The directionality of halogen bonds involving iodine and bromine is high, whereas that of chlorine is low and that of fluorine is negligible. The directionality of the halogen bonds in the C6F5I– and C2F5I–pyridine complexes is higher than that in the hydrogen bonds in the water dimer and water–formaldehyde complex. The calculations suggest that the C? I and C? Br halogen bonds play an important role in controlling the structures of molecular assemblies, that the C? Cl bonds play a less important role and that C? F bonds have a negligible impact.  相似文献   

20.
Density functional theory B3LYP method with 6‐31G* basis set has been used to optimize the geometries of the catechin, water and catechin‐(H2O)n complexes. The vibrational frequencies have been studied at the same level to analyze these complexes. Six and eleven stable structures for the catechin‐H2O and catechin‐(H2O)2 have been found, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes corrected by basis set superposition error, are from ?13.27 to ?83.56 kJ/mol. All calculations also indicate that there are strong hydrogen‐bonding interactions in catechin‐water complexes. The strong hydrogen‐bonding contributes to the interaction energies dominantly. The O–H stretching motions in all the complexes are red‐shifted relative to that of the monomer.  相似文献   

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