Infrared and Raman spectra of 8-azaguanine and 8-azaadenine

The IR and Raman spectra of 8-azaguanine and 8-azaadenine have been studied. The spectra of 8AG have been critically examined and compared with those of guanine and 9-methylguanine. Similarly, the spectra of 8-azaadenine have been examined and compared with those of adenine and 9-methyladenine. It has been possible to refute or accept the assignments for certain frequencies proposed earlier in the parent molecules by other workers, and thus almost unambiguous assignments for several frequencies in guanine and adenine as well as in 8AG and 8AA have been obtained. Several frequencies have been explained as combinations involving a 130 cm⁻¹ vibration which has been assigned to the ring-folding mode. It is found that not as many combination bands involving this mode occur in 8AA as those in 8AG. These observations indicate that guanine and 8AG are geometrically more flexible than adenine and 8AA.     

Anharmonic force fields of naphthalene-h8 and naphthalene-d8

The cubic and the quartic semidiagonal anharmonic force fields of naphthalene-h8 and -d8 are obtained using density functional theory (DFT) with the B9-71 functional and a triple-zeta plus double polarization (TZ2P) basis set. The fundamental frequencies computed by second-order vibrational perturbation theory are in very good agreement with the experimental data, with a mean absolute deviation (MAD) of 4 cm(-1) for C(10)H(8) and 6 cm(-1) for C(10)D(8). Some of the fundamental frequencies have been reassigned on the basis of the present results. Only CH stretchings seem to be significantly affected by Fermi resonances, with two shifts larger than 10 cm(-1). Calculated infrared harmonic intensities reproduce the experimental data within 15%, with the exception of CH stretchings affected by a larger error. Scale factors from C(10)H(8) have been tested by deriving the fundamental frequencies of C(10)D(8) from the theoretical harmonic ones. These fundamentals are in nice agreement with those obtained from the C(10)D(8) anharmonic force field. These results support the use of scale factors to calculate the vibration spectra of larger polycyclic aromatic hydrocarbons of great astrophysical interest.     

Synthesis of 8-bromo-, 8-methyl- and 8-phenyl-dATP and their polymerase incorporation into DNA

dATP derivatives bearing Br, Me or Ph groups in position 8 were prepared and tested as substrates for DNA polymerases to show that 8-Br-dATP and 8-Me-dATP were efficiently incorporated, while 8-Ph-dATP was a poor substrate due to its bulky Ph group.     

Cyclopentyl derivatives of 8-azahypoxanthine and 8-azaadenine. Carbocyclic analogs of 8-azainosine and 8-azaadenosine

Four types of carboeyclic analogs of 8-azahypoxanthine and 8-azaadenine nucleosides have been prepared. This group of analogs is comprised of derivatives having the (±)-as-3-(hydroxy-methyl)cyclopentyl,(±)-trans-3-hydroxy-cis-4-(hydroxymethyl)cyclopentyl), (±)-trans-2-hydroxy-cis-4-(hydroxymethyl)cyclopentyl, and (±)-trans-2, trans-3-dihydroxy-cis-4-(hydroxymethyl)-cyelopentyl groups at position 3 of 3,6-dihydro-7H-v-triazolo[4,5-d]pyrimidm-7-one and of 7-amino-3H-v-triazolo[4,5-d]pyrimidine. Diazotization of (5-amino-6-chloropyrimidin-4-yl-amino)eyclopentane derivatives and acidic hydrolysis, without isolation of the resulting 7-chloro-3H-v-triazolo[4,5-d]pyrimidines yielded the 8-azahypoxanthine derivatives (III). Treatment of unpurified 7-chloro-3H-v-triazolo[4,5-d]pyrimidines with anhydrous ammonia gave the 8-azaadenine derivatives (IV). The cyclopentane analogs of 8-azaadenylic acid and of 8-aza-adenosine 3′,5′ -cyclic monophosphate were prepared from the 8-azaadenosine analog.     

13C NMR spectra of 8-mercaptoquinoline and 8-hydroxyquinoline

The signals in the¹³C NMR spectra of quinoline and its 8-substituted derivatives (SH, SCH₃, OH, OCH₃, NH₂, I, and CH₃), 8,8-diquinolyl disulfide, the 8-hydroxy-N-methylquinolinium ion, and the protonated and anionic forms of 8-hydroxy- and 8-mercaptoquinoline were assigned. The increments of the substituents in the neutral forms of these compounds correlate satisfactorily with those in substituted benzenes and the Swain-Lupton parameters (r = 0.94–0.99). The differences in the ortho increments of the substituents are due to a change in the electron densities on the carbon atoms and also to steric hindrance. The effect of an intramolecular hydrogen bond on the¹³C chemical shift of the quinoline ring of 8-hydroxy- and 8-mercaptoquinoline was examined. The¹³C chemical shifts correlate satisfactorily with the total charges (q) on the carbon atoms in the neutral forms of these compounds. A similar correlation is satisfied to a lesser extent for the protonated and anionic forms because of a change in the bond orders.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 657–662, May, 1980.     

A quantum chemical study of silsesquioxanes: H8Si8O12, Me8Si8O12, H@Me8Si8O12, He@Me8Si8O 12 + , and He@Me8Si8O12

Quantum chemical PBE0 and B3LYP/cc-pVTZ, PBE0, B3LYP, RHF and MP2/6-31G(d,p) methods are employed to calculate the structural parameters of octa(silsesquioxane) H₈Si₈O₁₂ and octa(methylsilsesquioxane) Me₈Si₈O₁₂. These molecules and complexes H@Me₈Si₈O₁₂, He@Me₈Si₈O ₁₂ ⁺ , and He@Me₈Si₈O₁₂ have highly symmetric (O _h ) equilibrium configurations. With the use of the PBE0 method and a cc-pVTZ multicenter basis set common for the complex and its components coincidence is achieved between the calculated polarizability of a free He atom and the experimental value of 0.21 ų and the polarizability depression of 0.17 ų was found for He@Me₈Si₈O₁₂. In order to avoid the false conclusion about molecular symmetry the calculations of the structure of silsesquioxanes must be performed with sufficiently high accuracy (Int = ultrafine and Opt = tight in the use of the GAUSSIAN program).     

Vibrational spectra of C60.C8H8 and C70.C8H8 in the rotor-stator and polymer phases

C(60).C(8)H(8) and C(70).C(8)H(8) are prototypes of rotor-stator cocrystals. We present infrared and Raman spectra of these materials and show how the rotor-stator nature is reflected in their vibrational properties. We measured the vibrational spectra of the polymer phases poly(C(60)C(8)H(8)) and poly(C(70)C(8)H(8)) resulting from a solid-state reaction occurring on heating. On the basis of the spectra, we propose a connection pattern for the fullerene in poly(C(60)C(8)H(8)), where the symmetry of the C(60) molecule is D(2h). On illuminating the C(60).C(8)H(8) cocrystal with green or blue light, a photochemical reaction was observed leading to a product similar to that of the thermal polymerization.     

Isomer stability and bond-breaking energies of N8C8H8 cages

Molecules consisting entirely or predominantly of nitrogen have been extensively investigated for their potential as high-energy density materials (HEDM). Such molecules react to produce N2 and large amounts of energy, but many such molecules are too unstable for practical applications. In the present study, cage isomers of N8C8H8 are studied using theoretical calculations to determine the structural features that lead to the most stable cages and determine the energetics of dissociation for the various isomers. The isomers are evaluated for thermodynamic (isomer vs isomer) stability and kinetic (with respect to dissociation) stability. Density functional theory (B3LYP), perturbation theory (MP2), and coupled-cluster theory [CCSD(T)] are employed, in conjunction with the cc-pVDZ basis set of Dunning. Trends in isomer stability and dissociation energies are calculated and discussed.     

The supramolecular helical architecture of 8-oxoinosine and 8-oxoguanosine derivatives

The 8-oxoguanosine derivative 1 and the 8-oxoinosine derivative 2 b, with appropriate substituents on their ribose moieties, form hexagonal lyotropic mesophases in hydrocarbon solvents. Small-angle X-ray scattering analysis of a film of 1 and of the mesophase of 2 b, and NMR and CD spectra of isotropic solutions of 2 b, indicate that in both cases the supramolecular structures adopted are continuous helices formed by a hydrogen-bond network between the heterocyclic bases. Notably, while derivative 2 b, which bears large substituents on its ribose moiety, undergoes self-assembly and mesophase formation, oxoinosine 2 a, with only decanoyl groups on its ribose moiety, does not. This may be ascribed to the reduced amphiphilic properties of the latter and the absence of aromatic groups.     

The synthesis of 8-hydroxy- and 8-methoxy-ellipticines

The first synthesis of 8-hydroxyellipticine is described and its identity with an ellipticine metabolite from $\text{Aspergillus}$$\text{alliaceus}$ confirmed.     

Preparation of 8-alkylaminoquinolines from 8-chloroquinolines

The chlorine of 8-chloroquinoline undergoes a metathetical reaction with methylamine or ethylamine in aqueous solution under pressure in the presence of cuprous chloride, to give 8-methylaminoquinoline and 8-ethylaminoquinoline. The preparation of 8-aminoquinoline from 8-chloroauinoline is confirmed.     

The gas-phase equilibrium structures of Si8O12(OSiMe3)8 and Si8O12(CHCH2)8

The equilibrium molecular structure of Si(8)O(12)(OSiMe(3))(8) has been determined in the gas phase by electron diffraction (GED). With OSi-containing substituents on the cage silicon atoms, this molecule contains a moiety, which would, if reproduced in a periodic manner, yield a zeolite-type structure. Extensive ab initio calculations were used to identify two conformers of this molecule, with D(4) and D(2) point-group symmetries; the D(4)-symmetric conformer was approximately 1.2 kJ mol(-1) lower in energy. With 132 atoms in each conformer, this is one of the largest studies to be undertaken using gas electron diffraction. Semiempirical molecular-dynamics (SE-MD) calculations were used to give amplitudes of vibration, vibrational distance corrections (differences between interatomic distances in the equilibrium structure and the vibrationally averaged distances that are given directly by the diffraction data), and anharmonic constants. The structure of Si(8)O(12)(CHCH(2))(8) has also been determined by GED. Calculations showed that the vinyl groups are fairly unhindered and rotate between three minimum-energy positions. Ultimately, all possible combinations of the vinyl groups in these low-energy positions were accounted for in the GED model.     

8-葵炔基苯并内酰胺-V8的改良合成

8-葵炔基苯并内酰胺-V8是我们最近发现的具有亚基选择性的PKC调节剂,动物实验表明有抗癌活性。本文探讨了一个对于这个化合物的新的合成路线。以4为原料,通过碘基化反应,成环反应,Pd/CuI催化的葵炔与芳基碘代物的偶联反应等关键步骤,以22.4%的收率得到了该化合物。     

Crystal Structures of 8-Methoxy- and 8-Nitronaphthonitrile; Intramolecular Nucleophile-electrophile Interactions

The crystal structures of 8-methoxy-1-naphthonitrile and 8-nitro-1-naphthonitrile have been determined by X-ray analysis. The methoxynitrile molecule shows a distortion pattern that is essentially similar to that found previously in other 1,8-disubstituted naphthalenes with Nu…C? O interactions; instead of non-planarity at the carbonyl C-atom there is bending at the the cyano C-atom. Crystals of the nitronitrile contain two symmetry-independent molecules that differ in structure; both show bent cyano groups, short O…C? N distances, and asymmetric nitro groups, but in different degree. There is no clear correlation between the amount of any given distortion and the strength of the nucleophile-electrophile interaction.     

Synthesis and structure of Mercury 8-selenolquinolinate Hg(C9H6NSe)2: Crystal-chemical comparison of mercury 8-selenol-, 8-mercapto-, and 8-hydroxyquinolinates

Mercury 8-selenolquinolinate was synthesized and studied by X-ray diffraction. In neutral Hg(C₉H₆NSe)₂, 8-selenolquinoline is a bidentate (S,N) ligand. The coordination polyhedron of mercury is a distorted tetrahedron or a seesaw (2Se + 2N). The bond lengths are as follows: Hg-Se, 2.4599(9) and 2.4606(9) Å; Hg...N, 2.497(6) and 2.513(6) Å. The SeHgSe bond angle is 166.07(3)°. Mercury 8-selenolquinolinate belongs to the class of chelates in which the five-membered chelate rings-Hg-Se-C-C-N-contain a donor selenium atom. The structures and the Hg-Se, Hg-S, Hg-O, and Hg-N bonds in mercury 8-selenol-, 8-mercapto-, and 8-hydroxyquinolinates were analyzed.     

Site specificity in cycloadditions of diphenylnitrile imine with 8-substituted-8-azaheptafulvenes and tricarbonyl (8-azaheptafulvene) iron complexes

The reaction of diphenylnitrile imine with 8-substituted-8-azaheptafulvenes is both site and regiospecific and resulted in a mixture of two [8+4]-adducts in high yield. The mechanism of the reaction was investigated. The [8+4]-adducts underwent easily a reversible thermal 1,7-sigmatropic shift involving an sp³ nitrogen centre. Diphenylnitrile imine reacted also with tricarbonyl(8-azaheptafutvene)iron complexes lo give adducts to the CN double bond, the degradative oxidation of which with trimethylamine-N-oxide was investigated. The specificity of the cycloadditions is briefly discussed on the basis of a simple perturbation theory approach.     

The solubilities of zinc complexes of 8-quinolinol and some derivatives of 8-quinolinol

The solubilities of bis-8-quinolinolo-zinc^II, bis-2-methyl-8-quinolinolo-zinc^II and bis-5 : 7-dibromo-S-quinolinolo-zinc^II have been measured over the pH range of 4.5 to 9 at ionic strengths of 0.114 and 0.230 and at 25° and 40°. A mathematical treatment of the results gave nearly constant solubility products only when a dissolved but undissociated molecule, in addition to all of the dissociated and partly dissociated species, was considered. The relative abundance of each species of molecule in solution has been calculated.