Investigation of the interaction of DNA and neutral red by fluorescence spectroscopic analysis

The binding characteristics of neutral red (NR) with DNA were investigated by fluorescence spectrometry. Chemometrics approach as singular value decomposition (SVD) was used to evaluate the number of spectral species in the drug-DNA binding process, and then the intrinsic binding constant of 1.6 × 104 in base pairs and the binding site number of 0.97 were obtained from the Scatchard plot.     

Investigation of the factors affecting the carbohydrate–lectin interaction by ITC and QCM-D

Although the carbohydrate–lectin interactions have been intensively investigated, there is little report concerning the factors that affect the carbohydrate–lectin interaction. The interactions between concanavalin A (Con A) and glycopolymers, namely poly(2-(methacrylamido)-glucopyranose) and poly(2-methacrylamido-2-deoxy-glucitol) containing pyranose ring form and open form of glucosamine, respectively, have been investigated by a combination of isothermal titration calorimetry and quartz crystal microbalance-dissipation. Our results show that not only the pyranose ring form of glucosamine but also the open form can bind to Con A. Moreover, we investigate the influence of temperature on the carbohydrate–lectin interaction. As the temperature increases, the carbohydrate–lectin interaction is enhanced.     

Investigation of the interaction between HⅣ-1 DNA and cyclic peptides by electrospray ionization mass spectrometry

The interaction between HⅣ-1 DNA and five cyclic peptides (CP1-CP5) was investigated using electrospray ionization mass spectrometry (ESI-MS). It revealed that CP1 [c(Ala-Tyr-Leu-Ala-Gly)] and CP4 [c(Pro-D-Tyr-Leu-D-Ala-Gly)] have the higher binding affinity with the duplex DNA among the five cyclic peptides.     

The synthesis of mono-6-thio-β-cyclodextrin capped CdTe QDs and its interaction with neutral red

This paper presents a novel method for the synthesis of CdTe quantum dots (QDs) capped with β-cyclodextrin in aqueous solution using both TGA and mono-6-thio-β-CD as stabilizers. The interaction between mono-6-thio-β-CD-CdTe QDs and neutral red (NR) was studied with fluorescence, UV-absorption and the resonance Rayleigh scattering spectrum. When its concentration was over 7.5 × 10^?6 mol/L, the neutral red began to aggregate on the surface of the mono-6-thio-β-CD-CdTe QDs, which resulted in the mono-6-thio-β-CD-CdTe QDs particle size increasing, the sharply quenched fluorescence, and the marked increase of RRS intensity.     

Investigation and characterization by TG/DTG–DTA and DSC of the fusion of Riboflavin,and its interaction with the antibiotic norfloxacin in the screening of cocrystal

This work synthesized and characterized the NOR-RIB 1:1 (mol–mol) cocrystal. During a study of the reagents, Riboflavin (RIB) melted at 304 °C, which is different from the temperature previously reported in the literature (280–290 °C); therefore, this compound was characterized individually. Subsequently, the cocrystal was synthesized with the active pharmaceutical ingredient (API) norfloxacin (NOR) with the RIB coformer, and the mechanochemical synthesis route was adopted. NOR, RIB, and the cocrystal were characterized by thermogravimetry–differential thermal analysis (TG–DTA), differential scanning calorimetry (DSC), DSC coupled to a microscope (photo-DSC), mid-infrared spectroscopy (MIR), and powder X-ray diffraction. The results of thermal analysis showed that the RIB starts decomposition process (260 °C) and then melts (304 °C). The MIR found that beginning at 295 °C, the RIB passes into the form of a decomposition intermediate; therefore, the melting point observed in the DSC curve is related to this decomposition material. The cocrystal presented thermal stability (200 °C) lower than the API (235 °C) and the coformer (260 °C). The DSC curve did not contain a melting peak. The bands at 1726 cm^?1 (C=O of the carboxylic acid) for the NOR, and the band at 3326 cm^?1 (stretch O–H), among others, were not visible for the cocrystal in the MIR spectrum, indicating interactions in these regions. The X-ray diffractograms showed a new diffraction pattern, which proved the obtainment of a new phase and cocrystal formation.

     

Studies of the interaction between daidzein and 3′-daidzein sulfonic sodium with bovine serum albumin by spectroscopic methods

The interaction between daidzein and 3′-daidzein sulfonic sodium with bovine serum albumin (BSA) in physiological buffer (pH = 7.4) is investigated by fluorescence quenching technique and UV/vis absorption spectra. The results reveal that both daidzein and 3′-daidzein sulfonic sodium could strongly quench the intrinsic fluorescence of BSA. The quenching mechanism of both the daidzein and 3′-daidzein sulfonic sodium for BSA is static quenching procedure. The apparent binding constants K _a and number of binding sites n of daidzein and 3′-daidzein sulfonic sodium with BSA are obtained by fluorescence quenching method. The thermodynamic parameters, enthalpy change (Δ_r H ^m ), and entropy change (Δ_r S ^m ), are calculated, respectively, which indicate that the interaction of daidzein with BSA is driven mainly by hydrogen bonding and van der Waals, and 3′-daidzein sulfonic sodium with BSA is driven mainly by hydrophobic forces. The distance r between BSA with daidzein and 3′-daidzein sulfonic sodium are calculated to be 4.02 nm and 3.08 nm, respectively, based on F?rster’s non-radiative energy transfer theory. The results of synchronous fluorescence spectra show that binding of daidzein and 3′-daidzein sulfonic sodium with BSA cannot induce conformational changes in BSA.     

Cooperativity of H-bonding and anion-π interaction in the binding of anions with neutral π-acceptors

A rare anion-π complex between bromide and a neutral receptor is reported and related receptor systems are studied with a series of anions. The interaction is observed in the solid state and in solution, and further evidence for it is obtained by a computational study.     

Electrochemical and spectroscopic characterization of the interaction between β-lapachone and PAMAM derivatives immobilized on surface electrodes

Journal of Solid State Electrochemistry - The β-lapachone (βLP) is a very promising antitumor drug, but its low solubility in water limits its clinical application. This work reports the...     

Probing the chemical reactivity of interfaces: Investigation on the interaction of dehydroindigo with Laponite by UV–vis,Raman and infrared spectroscopy

In this work, the interaction between dehydroindigo (an intermediary oxidized form of indigo) and Laponite clay was investigated. Dehydroindigo (DHI) has been detected when indigo is adsorbed by clay minerals, but it is relatively unstable and in the presence of water it turns back into indigo. It is, therefore, important to understand the factors that extend its stability and Laponite was chosen because the small aspect ratio implies in a large amount of silanol groups (SiOH) which would thus favor the DHI interaction through hydrogen bonding.A significant bathochromic shift (65 nm) of the DHI π®π* transition band in the visible region and changes in the relative intensities and position of the Raman bands at 1530, 1378 and 1167 cm⁻¹ assigned to ν(NCCN), δ(CN) and ν(CN) respectively, indicate that the interaction is stronger than expected for the van der Waals and polarization forces involved in the external surfaces interactions with the siloxane groups. It was also observed that DHI presents an enhanced photochemical stability when interacting with Laponite. These results indicate that hydrogen bonding between a DHI nitrogen atom and the −SiOH or MOH groups is mainly responsible for the behavior present in the DHI + Lap system.     

Investigation on the toxic interaction of chrysoidine hydrochloride–CTMAB combined contamination with calf thymus DNA

The toxic interaction of the azo dye-chrysoidine hydrochloride combined with cetyltrimethyl ammonium bromide (CTMAB) in living tissue was studied in vitro. The absorption spectrum, resonance light scattering (RLS), circular dichroism (CD) and transmission electron microscopy (TEM) results showed that the toxicity of chrysoidine hydrochloride itself to calf thymus DNA (ct-DNA) is weak, while the chrysoidine hydrochloride–CTMAB combined pollution showed obvious toxic interaction with ct-DNA. The chrysoidine hydrochloride–CTMAB combined contamination can interact with ct-DNA to form an ion-associated complex through electrostatic and hydrophobic forces. The conformation of DNA was changed in the interaction process to show toxic. The experimental results showed that the combination of chrysoidine hydrochloride–CTMAB has higher toxicity to ct-DNA than either chrysoidine hydrochloride or CTMAB individually, and the combined pollution showed a strong toxic co-effect at a dose of 3.0 × 10^?4 mol L^?1 chrysoidine hydrochloride and 1.6 × 10^?5 mol L^?1 CTMAB.     

Photosensitization of DNA by β-carbolines: kinetic analysis and photoproduct characterization

β-Carbolines (βCs) are a group of alkaloids present in many plants and animals. It has been suggested that these alkaloids participate in a variety of significant photosensitized processes. Despite their well-established natural occurrence, the main biological role of these alkaloids and the mechanisms involved are, to date, poorly understood. In the present work, we examined the capability of three important βCs (norharmane, harmane and harmine) and two of its derivatives (N-methyl-norharmane and N-methyl-harmane) to induce DNA damage upon UV-A excitation, correlating the type and extent of the damage with the photophysical characteristics and DNA binding properties of the compounds. The results indicate that DNA damage is mostly mediated by a direct type-I photoreaction of the protonated βCs after non-intercalative electrostatic binding. Reactive oxygen species such as singlet oxygen and superoxide are not involved to a major extent, as indicated by the only small influence of D(2)O and of superoxide dismutase on damage generation. An analysis with repair enzymes revealed that oxidative purine modifications such as 8-oxo-7,8-dihydroguanine, sites of base loss and single-strand breaks (SSB) are generated by all βCs, while only photoexcited harmine gives rise to the formation of cyclobutane pyrimidine dimers as well.     

Spectral and Electrochemical Investigation of Intercalations of Adrenaline and CT－DNA

A strong interaction between double stranded calf-thymus DNA (ds-DNA) and adrenaline in solution, but no interaction between single stranded calf-thymus DNA (ss-DNA) and adrenaline was observed by the use of UV-visible spectroscopy and voltammetric techniques. It is suggested that the interaction leads to an intercalation of adrenaline molecules into the groove of ds-DNA and the formation of ds-DNA (adrenallne)n complex. The binding site size of the interaction of adrenaline with CT-DNA in nucleotide phosphate [ NP] has been determined as 25. The interaction of different concentration adrenaline with DNA modified GCE shows that the DNA modified GCE can be a good tool to detect lower concentration adrenaline.     

Mechanistic Investigation of the Oxidation of Lysine by Oxone

The kinetics and mechanism of oxidation of lysine, a basic α-amino acid, by oxone in an acetic acid/sodium acetate buffered medium (pH = 3.6–5.2) at 308 K has been investigated. The rate of disappearance of oxone at constant [lysine] and pH follows the equation:

Synthesis and spectroscopic analysis of a stereoisomer library of the phytophthora mating hormone α1 and derived bis-Mosher esters

Fluorous mixture synthesis provided all eight diastereomers of the phytophthora hormone α1 with the R configuration at C11 as individual samples after demixing and detagging. The library of all possible bis-Mosher esters (16) was then made by esterification. Complete sets of (1)H, (13)C, and (for the Mosher esters) (19)F NMR spectra were recorded, assigned, and compared with each other and with published spectra. Not all of the spectra are unique, and the (1)H NMR spectra of the Mosher esters provided the most information. The previous assignment of the natural sample as an "all-R" stereoisomer mixed with its 3S-epimer was confirmed.     

Investigation of the inclusion complex of tolfenamic acid with β-cyclodextrin: Geometry and NBO analysis

Quantum chemical calculations were carried out to investigate geometry and driving forces for inclusion complexes of tolfenamic acid (TA) into β-CD (at 1:1 stoichiometry). Two possible orientations of TA in the β-CD cavity were considered. Both PM3MM and ONIOM2 method evidence that TA is encapsulated in the β-CD cavity for A and B orientation. Finally, charge transfer between the donor and acceptor orbitals of each TA and β-CD play an important role to stabilize the inclusion complex.     

Investigation of the Interaction between Isoflavonoids and Bovine Serum Albumin by Fluorescence Spectroscopy

The interactions of bovine serum albumin （BSA） with three structurally related isoflavonoids, genistein, puerarin and daidzein, were studied under physiological conditions by fluorescence spectroscopic technique. The quenching mechanism of these compounds with BSA was suggested as static quenching and the binding constants were determined at different temperatures based on the fluorescence quenching results. The transfer efficiency of energy and distance between the acceptor and BSA were investigated on the basis of the mechanism of the Forster energy transference. According to the thermodynamic parameters it has been suggested that the acting force be mainly hydrophobic force. The comparison of binding potency of the three isoflavonoids to BSA showed that the substitution by 5-OH and 8-Glc could enhance the binding affinity. All these obtained in the work can make us better understand the mode of the action and pharmacological activities of the isoflavonoids.     

Electrochemical and associated techniques for the study of the inclusion complexes of thymol and β-cyclodextrin and its interaction with DNA

Journal of Solid State Electrochemistry - Thymol, a potent agent for microbial, fungal, and bacterial disease, has low aqueous solubility and it is genotoxic, i.e., is capable of damaging...