Theoretical model for a tetrad of hydrogen bonds and its application to interpretation of infrared spectra of salicylic acid

Theoretical model of vibrational interactions in hydrogen-bonded salicylic acid dimer is presented which takes into account the adiabatic couplings between high- and low-frequency O-H and O...O stretching vibrations, resonance interactions between both intermolecular hydrogen bonds and between inter- and intramolecular hydrogen bonds, and Fermi resonance between the O-H stretching fundamental and the first overtone of the O-H in-plane bending vibrations. The model is used for theoretical simulation of the nu(s) stretching bands of salicylic acid and its OD derivative at 300 K. The effect of deuteration is successfully reproduced by our model. Infrared, far infrared, Raman, and low-frequency Raman spectra of the polycrystalline salicylic acid and its deuterated derivative have been measured. The geometry and experimental frequencies are compared with the results of density-functional theory calculations performed at the B3LYP6-31 ++ G**, B3LYP/cc-pVTZ, B3PW916-31 ++ G**, and B3PW91/cc-pVTZ levels. O-H, O-D, and O...O stretching frequencies are used in theoretical simulation of the nu(s) stretching bands.     

Infrared spectra of the hydrogen bonded crystals: 1-methylthymine

A theory for the infrared spectra of hydrogen bonds in molecular crystals like 1-methylthymine, containing four hydrogen bonded molecules in the unit cell is presented. The spectra computed theoretically are in good agreement in both the frequency and intensity distribution with the experimental ones and the changes in the fine structure of the spectra introduced by deuteration are quantitatively reproduced.     

Theory of the infrared spectra of the hydrogen bond in molecular crystals

A general model for the vibrational interactions of the hydrogen bonds in molecular crystals is presented. The energy and the intensity distributions of the IR spectra of the 1-methylthymine and uracil crystals are correctly reproduced.     

Comparative study of weak interactions in molecular crystals: H-H bonds vs hydrogen bonds

The crystal structures of tetraphenylphosphonium squarate, bianthrone, and bis(benzophenone)azine are shown to contain a variety of C-H(delta+)...(delta+)H-C interactions, as well as a variety of C-H...O and C-H...C(pi) interactions. Each of these molecules possesses interactions that can possibly be characterized as either H-H bonds or weak hydrogen bonds based on the first four criteria proposed by Koch and Popelier. These interactions have been completely characterized topologically after the multipole refinement of the structures. It appears that weak interactions of the form C-H(delta+)...(delta+)H-C possess certain correlations between the various properties of the electron density at the bond critical points. The coexistence of the three types of interactions makes it possible to establish similarities and differences in the correlations of these weak interactions. This all leads to a better understanding of H-H interactions and how they fit into the hierarchy of weak interactions.     

Subtly tuning intermolecular hydrogen bonds in hybrid crystals to achieve ultrahigh-temperature molecular ferroelastic

Molecular-based ferroic phase-transition materials have attracted increasing attention in the past decades due to their promising potential as sensors, switches, and memory. One of the long-term challenges in the development of molecular-based ferroic materials is determining how to promote the ferroic phase-transition temperature (T_c). Herein, we present two new hexagonal molecular perovskites, (nortropinonium)[CdCl₃] (1) and (nortropinium)[CdCl₃] (2), to demonstrate a simple design principle for obtaining ultrahigh-T_c ferroelastic phase transitions. They consist of same host inorganic chains but subtly different guest organic cations featuring a rigid carbonyl and a flexible hydroxyl group in 1 and 2, respectively. With stronger hydrogen bonds involving the carbonyl but a relatively lower decomposition temperature (T_d, 480 K), 1 does not exhibit a crystalline phase transition before its decomposition. The hydroxyl group subtly changes the balance of intermolecular interactions in 2via reducing the attractive hydrogen bonds but increasing the repulsive interactions between adjacent organic cations, which finally endows 2 with an enhanced thermal stability (T_d = 570 K) and three structural phase transitions, including two ferroelastic phase transitions at ultrahigh T_c values of 463 K and 495 K, respectively. This finding provides important clues to judiciously tuning the intermolecular interactions in hybrid crystals for developing high-T_c ferroic materials.

Two new hexagonal molecular perovskites with the same inorganic chain but subtly different organic cations exhibit distinct phase-transition behaviours owing to the different intermolecular interactions.     

Theoretical modeling of infrared spectra of hydrogen-bonded crystals of salicylic acid

A theoretical model for the infrared spectra in the O-H stretching region of hydrogen-bonded salicylic acid is presented. Based on the model, infrared spectrum in the O-H stretching region is calculated for salicylic acid and compared with the experimental one. The experimental and theoretical spectra are in good agreement.     

Theory of electron localization and its application to blue-shifting hydrogen bonds

We propose a theory of electron localization or stabilization by electron localization through the interactions between occupied (i) and vacant (j*) orbitals under certain conditions, which have been believed so far to cause only electron delocalization. Electrons localize when the electrons redistributed by the interaction are more stable in the i-th occupied orbital than in the overlap region: h(ij*) > s(ij*)h(ii) for s(ij*) > 0. Electron delocalization occurs when h(ij*) < s(ij*)h(ii) for s(ij*) > 0. The h(ij*) and s(ij*)h(ii) terms represent the energy of the electrons in the overlap region and the energy of the redistributed electrons in the occupied orbital, respectively. The theory of electron localization is substantiated by the correlation of the C-H bond lengths of fluorinated methanes H(4-n)CF(n) (n = 1, 2, 3) to the electron population of the σ(CH) bonding orbital, and successfully applied to understanding blue-shifting hydrogen bonds in F(3)CH···X (X = CO, N(2), OC, Ne, OC(CH(3))(2)) and designing some proton donors, HCO(2)CH(3) and hypervalent molecules HPF(4) and HSF(5), for blue-shifting hydrogen bonds.     

Integrated intensity of continuous absorption in infrared spectra of complexes with medium-strong and strong hydrogen bonds

A simple, nongraphical and reproducible method of separation of the complex absorption due to strong hydrogen bonds from that due to the skeleton is proposed. The method has been tested on 17 complexes of pyridine N-oxide, triphenylphosphine oxide and DMSO-d₆ with dichloroacetic acid in dry dichloromethane and acetonitrile. The integrated intensity (A_CPA) and the centre of gravity (mathtype1) of complex absorption due to protonic vibration were measured and correlated with pK_a values of bases and chemical shifts of the hydrogen-bonded protons (δ), and discussed with respect to hydrogen bond strength variations. TheA^CPA values vary from 17.5 to 46 x 10⁴ cm mmol^-1 and were reproducible to within ± 1 x 10⁴ cm mmol⁻¹ (5-15 %). A nonlinear correlation between A_CPA and (mathtype2) has been found in wide region of data; (mathtype3) varies from 500 to 2300 cm⁻¹. A gradual proton transfer has been considered from the acid to pyridine N-oxides via strengthening intermolecular H-bonds, AH⋯ON, and further via weakening interionic H-bonds, A⁻⋯ HON⁺. The obtained correlations suggest that variations of hydrogen bond strength caused similar changes of A_CPA and (mathtype4) both in molecular (A–H⋯B) and ionic (A⁻⋯H–B⁺) species.     

Theoretical interpretation of infrared spectra of N-cyclohexyl-2-pyrrolidone in mixtures of hexane and CDCl3

Summary The infrared spectra of N-cyclohexyl-2-pyrrolidone (NCP) in binary mixtures of hexane and CDCl₃ were interpreted theoretically in the region of C=O stretching vibrations using the AM1 semiempirical method. The results were compared with those obtained for N,N-dimethylacetamide (DMA), cyclohexanone (CX) and propanone (PR). Good correlations were found between the carbonyl stretching frequencies and the theoretical parameters of free and solvated species in equilibria with hexane-CDCl₃ solvent mixtures.

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Theoretische Interpretation von Infrarot-Spektren von N-Cyclohexyl-2-pyrrolidon in Mischungen von Hexan und CDCl₃

Zusammenfassung Es wurden die Infrarot-Spektren von N-Cyclohexyl-2-pyrrolidon (NCP) in binären Mischungen von Hexan und CDCl₃ im Bereich der C=O Streckschwingung unter Benutzung der semiempirischen AM1-Methode interpretiert. Die Ergebnisse wurden mit denen für N,N-Dimethylacetamid (DMA), Cyclohexanon (CX) und Propanon (PR) verglichen. Es wurde eine gute Korrelation zwischen den Frequenzen der Carbonyl-Streckschwingung und den theoretischen Parametern der freien und solvatisierten Spezies im Gleichgewicht mit den Hexan-CDCl₃ Lösungsmittelgemischen gefunden.

     

Theoretical and spectroscopic study of infrared spectra of hydrogen-bonded 1-methyluracil crystal and its deuterated derivative

Theoretical simulation of the band shape and fine structure of the N-H(D) stretching band is presented for 1-methyluracil and its deuterated derivative taking into account anharmonic coupling between the high-frequency N-H(D) stretching and the low-frequency N...O stretching vibrations, resonance interaction between two equivalent hydrogen bonds in the dimer, anharmonicity of the potentials for the low-frequency vibrations in the ground and excited state of the N-H(D) stretching mode, Fermi resonance between the N-H(D) stretching and the first overtone of the N-H(D) bending vibrations, and electrical anharmonicity. The effect of deuteration has been successfully reproduced by our model calculations. Infrared, far-infrared, Raman, and low-frequency Raman spectra of the polycrystalline 1-methyluracil have been recorded. The geometry and experimental frequencies are compared with the results of harmonic and anharmonic B3LYP6-311++G(**) calculations.     

An FT-IR demonstration of the occurrence of satellite bands in the spectra of hydrogen bonds in crystals

OH stretching fundamentals in the spectra of hydrogen-bonded crystals are accompanied by satellite bands due to sum and difference transitions involving one quantum of the OH stretching vibration and one or more quanta of the low-frequency vibration of the hydrogen bond. Such satellites were detected in the FT-IR spectra of two hydrogen-bonded crystals, ice and methanol.NRCC No. 29006     

Effect of the resonance of molecular vibrations on the ir spectra of hydrogen bonds

The effects are considered of the vibrations occurring with the group of atoms peripheral towards the hydrogen bond on the IR spectrum of the model hydrogen bond. It. is shown that the resonance of the v_OHv_CH stretching vibrations in a hydrogen bonded molecule result in the division of the v_OH band into two other bands having different polarizations. The resonance interaction leads to redistribution of the intensity and perturbs the regular Franck—Condon type envelope of the spectrum.     

Theoretical modeling of infrared spectra of benzoic acid and its deuterated derivative

Theoretical simulation of the ν_s stretching band is presented for benzoic acid and its OD derivative at 300 K. The simulation takes into account an adiabatic coupling between the high-frequency O–H(D) stretching and the low-frequency intermolecular OO stretching modes, linear and quadratic distortions of the potential energy for the low-frequency vibrations in the excited state of the O–H(D) stretching vibration, resonance interaction between the two hydrogen bonds in the dimer, and Fermi resonance between the fundamental ν OH(D) stretching and the overtone of the δ O–H(D) bending vibrations.

Infrared, far-infarared, Raman and low-frequency Raman spectra of the polycrystalline benzoic acid and its deuterated form have been measured. The geometry and experimental frequencies are compared with the results of our B3LYP/6-311++G** and B3LYP/cc-pVTZ calculations.     

Multiple hydrogen bonds tuning guest/host excited-state proton transfer reaction: its application in molecular recognition

A molecular recognition concept exploiting multiple-hydrogen-bond fine-tuned excited-state proton-transfer (ESPT) was conveyed using 3,4,5,6-tetrahydrobis(pyrido[3,2-g]indolo)[2,3-a:3',2'-j]acridine (1a). The catalytic type 1a/carboxylic acids hydrogen-bonding (HB) complexes undergo ultrafast ESPT, resulting in an anomalously large Stokes shifted tautomer emission (lambdamax approximately 600 nm). Albeit forming a quadruple HB complex, ESPT is prohibited in the noncatalytic-type 1a/urea complexes (lambdamax approximately 430 nm). The HB configuration tuning ESPT properties lead to a feasible design for sensing multiple-HB-site analytes of biological interest.     

Raman and infrared spectra of some tetrahalide crystals

Recent Raman and infrared spectra of a number of tetrahalide crystals are reported. While some examples of isotopic and crystal field splittings of the internal molecular modes are included, the emphasis is on the external lattice vibrations which are important for investigations of intermolecular forces and lattice dynamics calculations. Because of the weak signals from these non-polar near-spherical molecules and other experimental difficulties, these modes have not been investigated in detail in earlier work. Examples to be discussed include CCl₄, CBr₄ and CF₄, all of which exhibit solid state phase transitions; the tetrachlorides of Ge, Ti, Si and Sn, all of which are thought to have similar crystal structures; and SnBr₄, the structure of which is accurately known and is used as a basis for lattice dynamics calculations.     

Low temperature FTIR spectra and hydrogen bonds in polycrystalline cytidine

FTIR spectra of polycrystalline samples of cytidine, pure and containing a small quantity of N(O)H or N(O)D groups (<20%), were measured in KBr pellets from 4000 to 400 cm(-1) at temperatures from 300 to 20K. For the first time the bands of the narrow isotopically decoupled proton stretching vibration mode (nu(1)) of OH- and NH- groups were found; their number corresponds to the number of H-bonds in crystal according to structural data. The FTIR spectra at low temperature in the out-of-plane bending nu(4) proton mode range (lower than 1000 cm(-1)) of N(O)H groups revealed narrow bands, which correspond to nu(1) bands together with several "extra" bands, which are influenced by the isotopic exchange and (or) cooling. All of them have their counterparts in the N(O)D-substance spectrum with an isotopic frequency ratio of 1.30-1.40. The "extra" bands are assigned to the H-bound OH and NH protons, which are disordered and cannot be seen with X-ray crystal structure analysis. The peak positions of both mode bands (expressed as the red shift of nu(1) or blue shift of nu(4) modes relatively free molecules) were used for the estimation of the energy of different H-bonds using previously established empirical correlations between spectral and thermodynamic parameters of hydrogen bonds. The correlation of the red shift and H-bond length is also confirmed for all five H-bonds of cytidine.     

The nature and energy characteristics of intramolecular hydrogen bonds in crystals

The review concerns the results of systematic X-ray diffraction studies of the electron density distribution in the crystals of compounds with strong intramolecular hydrogen bonds N-H...O, O-H...O, O-H...N, and N-H...S. The advantages of the topological analysis of the electron density distribution function in the analysis of the nature and estimation of the H-bond energies directly from experimental data are discussed. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 1–14, January, 2006.     

Intermolecular hydrogen bonds: Comparison of associates in crystals and liquids

The density and sound velocity were measured within wide ranges of temperature for a number of liquids (water, formamide, diols, aliphatic alcohols, cellosolves, ketones), in which various types of H-associate can exist. The temperature dependences of the adiabatic and molar adiabatic compressibility, density, and molar volume are analyzed. The values of the molar adiabatic compressibility permit one to evaluate the dimensionality of H-associates existing in liquids; the values of adiabatic compressibility do not offer this possibility. The terms responsible for the similarity and difference between H-associates in crystals and liquids are discussed.